C11orf30

General Information

Gene Name       : C11orf30
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C11orf30)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C11orf30 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C11orf30 RNA is bound by 19 proteins.  







eCLIP assay for C11orf30 is not avaliable on ENCORE database.





19 proteins are bound to C11orf30 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr117622734876227398+3'-UTR,CDS,intron-Proximal4.458624.58968K562PRPF8
chr117626137976261469+3'-UTR5.897448.33310K562CPEB4
chr117616443676164538+3'-UTR,intron-Distal,intron-Proximal4.284596.48405K562AQR
chr117615794376157998+5'-UTR,CDS,intron-Proximal3.8740811.39909K562ZNF622
chr117615612276156184+5'-UTR,intron-Proximal5.245235.93845K562DDX24
chr117615609176156162+5'-UTR5.7996912.36167K562ZNF622
chr117615793076157986+5'-UTR,CDS,intron-Proximal4.088283.56057K562U2AF2
chr117615616276156174+5'-UTR,intron-Proximal4.420639.53697K562ZNF622
chr117615614176156174+5'-UTR,intron-Proximal4.354604.16170K562UCHL5
chr117622446876224505+CDS3.345843.31745K562ZNF622
chr117615799876158052+CDS4.197467.14937K562ZNF622
chr117620737776207510+CDS,intron-Distal3.216943.16269K562IGF2BP1
chr117625062276250699+CDS,intron-Distal,intron-Proximal4.098113.35169HepG2U2AF2
chr117622717576227255+CDS,intron-Proximal3.664183.19080K562U2AF2
chr117618362676183744+CDS,intron-Distal3.914507.88406K562DDX24
chr117620723776207291+CDS,intron-Distal,intron-Proximal5.638579.61927HepG2U2AF2
chr117620735376207512+CDS,intron-Distal3.497664.48818HepG2GRWD1
chr117625063376250749+CDS,intron-Distal,intron-Proximal4.413429.43475HepG2PRPF8
chr117624898776249059+CDS,intron-Distal,intron-Proximal4.223463.85435K562PRPF8
chr117618361776183798+CDS,intron-Distal3.577895.11891HepG2GRWD1
chr117616924876169325+CDS,intron-Distal3.039113.45280HepG2BCLAF1
chr117625536476255439+CDS4.048893.15006K562RBM15
chr117625335376253407+CDS4.255784.42734K562UCHL5
chr117616435476164433+CDS,intron-Distal,intron-Proximal3.548634.71371HepG2GRWD1
chr117616290576163002+CDS,intron-Distal,intron-Proximal3.305334.45064HepG2GRWD1
chr117617487976175015+CDS,intron-Distal3.574596.06436HepG2BCLAF1
chr117616298876163002+CDS,intron-Distal,intron-Proximal3.683365.08507K562ZNF622
chr117622731476227350+CDS4.081603.20027K562ZNF622
chr117620722876207312+CDS,intron-Distal,intron-Proximal3.623716.04627K562U2AF2
chr117623942676239450+CDS4.031833.20027K562ZNF622
chr117618374976183864+CDS,intron-Distal4.3735912.06701K562ZNF622
chr117616289976162970+CDS,intron-Distal,intron-Proximal3.023584.34780K562ZNF622
chr117618361276183749+CDS,intron-Distal3.7096815.90392K562ZNF622
chr117616435776164422+CDS,intron-Distal,intron-Proximal3.281798.48432K562ZNF622
chr117620723576207294+CDS,intron-Distal,intron-Proximal3.308203.17814K562U2AF1
chr117622713276227214+CDS,intron-Proximal3.504974.57435K562SF3B4
chr117625335376253411+CDS3.922006.29174K562ZNF622
chr117623753976237634+CDS3.306144.59873K562UCHL5
chr117620743976207511+CDS,intron-Distal3.748656.55026K562ZNF622
chr117618369876183749+CDS,intron-Distal3.119344.26492HepG2BCLAF1
chr117618673776186787+intron-Distal3.426553.14999K562EXOSC5
chr117619345476193544+intron-Distal3.758634.76274K562UCHL5
chr117618884676188923+intron-Distal3.775063.24603K562KHSRP
chr117625137276251435+intron-Distal3.696293.24603K562KHSRP
chr117621257676212679+intron-Distal4.013344.15306K562SAFB2
chr117618086976181107+intron-Distal3.233064.35650K562KHSRP
chr117625341476253529+intron-Distal,intron-Proximal4.973856.22530K562AQR
chr117619059376190646+intron-Distal4.391103.87995K562UCHL5
chr117620576276205837+intron-Distal6.4237421.04822HepG2PTBP1
chr117619769476197779+intron-Distal3.790153.50894K562SAFB2
chr117618677776186865+intron-Distal4.890195.31505K562HNRNPM
chr117620773276207779+intron-Distal4.716264.54401K562KHSRP
chr117618784676187926+intron-Distal4.658185.58025K562HNRNPM
chr117618690976186959+intron-Distal4.686976.08953K562EXOSC5
chr117618725476187310+intron-Distal3.597304.02241K562EXOSC5
chr117624910276249153+intron-Distal3.366853.40058K562PRPF8
chr117619058776190669+intron-Distal3.980213.54264K562SAFB2
chr117618783876187915+intron-Distal4.366754.90578HepG2HNRNPM
chr117620777976207856+intron-Distal3.185103.57533K562KHSRP
chr117620491176204960+intron-Distal3.032663.51116K562LSM11
chr117622590876226027+intron-Distal3.638553.02234K562KHSRP
chr117618687776186966+intron-Distal4.083706.25630K562HNRNPM
chr117619070476190755+intron-Distal3.220583.17151K562UCHL5
chr117620575576205837+intron-Distal5.7575020.14210K562PTBP1
chr117620482676204897+intron-Distal4.7996010.52254K562LSM11
chr117620482876204893+intron-Distal4.236984.76744HepG2LSM11
chr117618013676180273+intron-Distal5.038098.72817K562KHSRP
chr117620762176207732+intron-Distal5.290808.49499K562KHSRP
chr117618784476187894+intron-Distal3.208503.14999K562EXOSC5
chr117624854876248660+intron-Distal3.231484.10408K562KHSRP
chr117615808676158173+intron-Distal,intron-Proximal3.832853.95921HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C11orf30 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C11orf30 is not available on ENCORE database.

  • 99 RBPs can affect the levels of C11orf30.  








The Knockdown/knockout RNA-Seq assay for C11orf30 is not available on ENCORE database.





99 RBPs can affect the gene expression of C11orf30 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C11orf30ENSG00000158636.12338.44570479.13880-0.501502.809702.02050HepG2ASCC1
C11orf30ENSG00000158636.12293.84180518.57230-0.819505.733504.36350HepG2BCCIP
C11orf30ENSG00000158636.121001.44710757.825000.402003.429702.06880HepG2BUD13
C11orf30ENSG00000158636.12740.06370905.58120-0.291202.047901.37740HepG2CALR
C11orf30ENSG00000158636.12754.997401073.41550-0.507703.770702.98120HepG2CPSF6
C11orf30ENSG00000158636.12621.83710808.88890-0.379403.573202.86130HepG2CELF1
C11orf30ENSG00000158636.12667.21750869.78530-0.382504.494003.58540HepG2DAZAP1
C11orf30ENSG00000158636.12375.21120509.86510-0.442402.104901.42060HepG2DDX55
C11orf30ENSG00000158636.12694.411101009.57400-0.539904.825303.51280HepG2DDX5
C11orf30ENSG00000158636.12506.55150654.86160-0.370502.393801.48080HepG2DHX30
C11orf30ENSG00000158636.12442.59950678.96220-0.617307.008405.92980HepG2DNAJC21
C11orf30ENSG00000158636.12443.21470672.97970-0.602608.358907.30210HepG2DNAJC2
C11orf30ENSG00000158636.12498.10010689.22800-0.468502.940901.99270HepG2EEF2
C11orf30ENSG00000158636.12679.99370492.890800.464201.947301.36350HepG2EIF4B
C11orf30ENSG00000158636.12708.60990858.06980-0.276102.391701.60500HepG2EIF4G1
C11orf30ENSG00000158636.12615.92100994.32520-0.6910011.6661010.57150HepG2ETF1
C11orf30ENSG00000158636.12622.42970373.475100.736804.833203.80880HepG2FUBP3
C11orf30ENSG00000158636.12450.03010685.46700-0.607105.381204.52220HepG2HNRNPA1
C11orf30ENSG00000158636.12633.91840799.34260-0.334502.844201.89860HepG2HNRNPA2B1
C11orf30ENSG00000158636.12644.72240777.26420-0.269701.994601.37890HepG2HNRNPF
C11orf30ENSG00000158636.12838.644301161.26860-0.469603.722703.00260HepG2HNRNPLL
C11orf30ENSG00000158636.12525.47950757.41840-0.527506.644105.74070HepG2HNRNPU
C11orf30ENSG00000158636.12607.60210765.38600-0.333102.361701.69030HepG2IGF2BP1
C11orf30ENSG00000158636.12364.46950481.61740-0.402102.014601.42970HepG2IGF2BP2
C11orf30ENSG00000158636.12922.416101386.61460-0.588104.572403.49610HepG2LARP4
C11orf30ENSG00000158636.12371.51040582.68560-0.649305.074103.42110HepG2LIN28B
C11orf30ENSG00000158636.12679.23900862.47560-0.344602.911002.12920HepG2NOL12
C11orf30ENSG00000158636.12620.49950749.70910-0.272902.062201.32150HepG2PARN
C11orf30ENSG00000158636.12549.13430444.587000.304602.019301.48740HepG2PCBP1
C11orf30ENSG00000158636.12417.99850670.18010-0.681104.208902.94350HepG2PCBP2
C11orf30ENSG00000158636.12462.26880675.55590-0.547305.794804.76000HepG2PPIL4
C11orf30ENSG00000158636.12636.84010452.380200.493304.966804.27880HepG2PTBP1
C11orf30ENSG00000158636.12369.22370823.29980-1.1569018.3075016.95350HepG2PUF60
C11orf30ENSG00000158636.12643.44930873.95890-0.441705.926505.12520HepG2PUM1
C11orf30ENSG00000158636.12630.62910873.32690-0.469704.559403.70960HepG2PUM2
C11orf30ENSG00000158636.12779.95220489.946700.670707.770606.80400HepG2QKI
C11orf30ENSG00000158636.12909.765801178.35180-0.373203.210602.29430HepG2RBM15
C11orf30ENSG00000158636.12636.78850444.655200.518004.165003.35270HepG2RBM25
C11orf30ENSG00000158636.12459.79210669.07170-0.541203.850402.66600HepG2RBM27
C11orf30ENSG00000158636.12365.16750543.31480-0.573202.821301.75120HepG2RCC2
C11orf30ENSG00000158636.12716.95330503.458800.509904.997004.30550HepG2NELFE
C11orf30ENSG00000158636.12591.90080468.898000.336002.350101.77580HepG2RECQL
C11orf30ENSG00000158636.12540.97860837.26360-0.630106.219605.25200HepG2RPLP0
C11orf30ENSG00000158636.12379.77530635.26580-0.742204.605103.39660HepG2RPS10
C11orf30ENSG00000158636.12398.66900544.41970-0.449502.976702.34320HepG2RPS19
C11orf30ENSG00000158636.12471.90230617.07860-0.387002.069101.37100HepG2RPS2
C11orf30ENSG00000158636.12398.24610665.59750-0.741005.173504.07870HepG2RPS3A
C11orf30ENSG00000158636.12447.22990626.76870-0.486902.695501.40150HepG2SART3
C11orf30ENSG00000158636.12559.19990786.59070-0.492206.340505.43030HepG2SMN1
C11orf30ENSG00000158636.12703.45430938.64880-0.416105.176704.55090HepG2SRFBP1
C11orf30ENSG00000158636.12891.94010491.611800.8593015.0049014.09220HepG2SRSF1
C11orf30ENSG00000158636.12577.19440763.62710-0.403804.013103.19920HepG2SRSF7
C11orf30ENSG00000158636.12527.71090399.950100.399803.252202.66380HepG2SRSF9
C11orf30ENSG00000158636.12685.75760814.95200-0.249001.965401.51440HepG2SSB
C11orf30ENSG00000158636.12816.49510441.872500.8857014.0199012.90090HepG2TAF15
C11orf30ENSG00000158636.12608.04960406.028400.582505.416304.25850HepG2TIA1
C11orf30ENSG00000158636.12365.48940735.95730-1.0098015.2763014.26880HepG2TIAL1
C11orf30ENSG00000158636.12514.38380742.55360-0.529706.398005.60400HepG2TRIM56
C11orf30ENSG00000158636.12558.41440851.34120-0.608404.433503.35630HepG2UBE2L3
C11orf30ENSG00000158636.12177.17520299.83180-0.759004.574703.59510HepG2UCHL5
C11orf30ENSG00000158636.12717.79290984.05870-0.455206.100805.13100HepG2UPF1
C11orf30ENSG00000158636.12309.65250464.76880-0.585902.541501.58260HepG2UPF2
C11orf30ENSG00000158636.12671.698001011.48370-0.590608.752907.01290HepG2UTP18
C11orf30ENSG00000158636.12717.32600950.07190-0.405404.550703.81380HepG2UTP3
C11orf30ENSG00000158636.12318.91560499.63900-0.647704.165503.28330HepG2XRN2
C11orf30ENSG00000158636.12692.854801082.27790-0.6434013.1697012.20030HepG2ZNF622
C11orf30ENSG00000158636.121328.649301747.92150-0.395703.770302.29250K562APOBEC3C
C11orf30ENSG00000158636.121550.896101212.330000.355202.045201.52550K562AQR
C11orf30ENSG00000158636.121223.087101571.68450-0.361802.768601.89430K562BOP1
C11orf30ENSG00000158636.121525.062101892.83260-0.311703.075001.82240K562CCDC124
C11orf30ENSG00000158636.121062.187701671.13790-0.6538010.129408.61920K562CPSF6
C11orf30ENSG00000158636.121108.227901946.42760-0.8126023.0762021.38110K562DDX47
C11orf30ENSG00000158636.12454.29570620.89120-0.450703.583202.68440K562EIF3G
C11orf30ENSG00000158636.121566.251801980.93360-0.338904.436503.25860K562EIF4G2
C11orf30ENSG00000158636.121003.333101319.80340-0.395502.099001.35670K562FIP1L1
C11orf30ENSG00000158636.121117.021601441.22820-0.367602.625501.73820K562FTO
C11orf30ENSG00000158636.12594.00260905.04330-0.607508.033407.07030K562FXR1
C11orf30ENSG00000158636.121259.675901595.51440-0.341002.921102.10530K562GPKOW
C11orf30ENSG00000158636.12741.560901173.02760-0.661608.177006.86530K562GRSF1
C11orf30ENSG00000158636.12761.922401004.53690-0.398803.592202.36370K562HNRNPA1
C11orf30ENSG00000158636.121377.787801759.06790-0.352503.353702.17560K562HNRNPL
C11orf30ENSG00000158636.12710.467601085.48060-0.611504.963203.67440K562HNRNPM
C11orf30ENSG00000158636.12883.752301112.46370-0.332003.124102.17720K562HNRNPU
C11orf30ENSG00000158636.12993.640501789.48050-0.848708.912007.49780K562HSPD1
C11orf30ENSG00000158636.12872.676201064.55530-0.286702.036201.31090K562MAGOH
C11orf30ENSG00000158636.12790.196901062.40500-0.427004.151503.00230K562MATR3
C11orf30ENSG00000158636.121188.665301557.40480-0.389803.578002.57500K562METAP2
C11orf30ENSG00000158636.12427.07830680.74730-0.672605.459603.49480K562NONO
C11orf30ENSG00000158636.121333.887401526.31240-0.194402.199401.52660K562NSUN2
C11orf30ENSG00000158636.12740.10540947.20190-0.355902.587201.64180K562PCBP2
C11orf30ENSG00000158636.12824.706801102.71240-0.419104.169803.18400K562POLR2G
C11orf30ENSG00000158636.121037.956601498.12760-0.529404.889503.75170K562PPIG
C11orf30ENSG00000158636.12441.72300672.27980-0.605904.691203.71650K562PRPF8
C11orf30ENSG00000158636.121046.98090845.112100.308902.438201.59450K562PSIP1
C11orf30ENSG00000158636.12661.286701034.27750-0.645308.454807.33450K562PTBP1
C11orf30ENSG00000158636.121331.658502161.33260-0.6987010.697709.07960K562PUF60
C11orf30ENSG00000158636.121599.710702299.02610-0.523208.342906.40810K562PUM1
C11orf30ENSG00000158636.121656.005502252.47830-0.443807.199205.62540K562PUM2
C11orf30ENSG00000158636.12716.16840991.78240-0.469704.140503.08860K562RBM22
C11orf30ENSG00000158636.12774.737101043.68450-0.429903.323302.11320K562NELFE
C11orf30ENSG00000158636.12358.83940684.78310-0.932308.894307.41570K562RPS19
C11orf30ENSG00000158636.12828.778001223.47140-0.561904.947503.55950K562RPS3
C11orf30ENSG00000158636.12433.18850687.36780-0.666104.279802.62300K562RRP9
C11orf30ENSG00000158636.121214.249001506.03110-0.310703.343302.45060K562SF3A3
C11orf30ENSG00000158636.12727.55000926.90370-0.349402.937602.05510K562SF3B4
C11orf30ENSG00000158636.12748.29820957.56310-0.355802.498401.50770K562SRSF5
C11orf30ENSG00000158636.12789.075901106.10290-0.487205.391304.23810K562SYNCRIP
C11orf30ENSG00000158636.12687.536801026.17810-0.577805.537304.51960K562TARDBP
C11orf30ENSG00000158636.12681.96140989.86070-0.537505.865104.60440K562TIA1
C11orf30ENSG00000158636.121212.986401440.00160-0.247502.825301.97070K562WDR43
C11orf30ENSG00000158636.12528.24290701.50710-0.409302.563501.41400K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C11orf30 is not available on ENCORE database.





6 RBPs can affect the splicing of C11orf30 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC11orf30ENSG00000158636.12chr11+7616579276165834761643577616443276169226761694020.407000.005170.07773includedK562SRSF1
SEC11orf30ENSG00000158636.12chr11+7625064276250684762488387624899476253259762534110.299000.002120.02645includedHepG2U2AF2
SEC11orf30ENSG00000158636.12chr11+761798957617994176174864761751247618360776183884-0.100000.001540.02026excludedHepG2U2AF2
SEC11orf30ENSG00000158636.12chr11+761798957617994176174864761751247618360776183884-0.108000.001440.05891excludedHepG2SFPQ
SEC11orf30ENSG00000158636.12chr11+762469387624710376239311762395107624883876248994-0.386000.000130.00597excludedHepG2SF3A3
SEC11orf30ENSG00000158636.12chr11+7617097676171129761692267616940276174864761751240.124000.003020.09231includedK562SF3B1
SEC11orf30ENSG00000158636.12chr11+762469387624710376239311762395107624883876248994-0.341000.002010.06777excludedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C11orf30 is not avaliable on ENCORE database.