B3GNT1

General Information

Gene Name       : B3GNT1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: B3GNT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for B3GNT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • B3GNT1 RNA is bound by 12 proteins.  







eCLIP assay for B3GNT1 is not avaliable on ENCORE database.





12 proteins are bound to B3GNT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116611290766112934-3'-UTR,intron-Distal4.028806.88182HepG2LARP4
chr116611329366113356-3'-UTR,intron-Distal4.565995.64948HepG2UPF1
chr116611287966112942-3'-UTR,intron-Distal4.1231913.97092HepG2GRSF1
chr116611292966113011-3'-UTR,intron-Distal4.5583928.50115HepG2DDX55
chr116611292266113009-3'-UTR,intron-Distal4.1841411.17164HepG2DDX6
chr116611308166113147-3'-UTR,intron-Distal4.9391723.75435HepG2LARP4
chr116611301166113071-3'-UTR,intron-Distal5.3147311.43490HepG2DDX55
chr116611301366113081-3'-UTR,intron-Distal4.7800517.50368HepG2LARP4
chr116611309166113157-3'-UTR,intron-Distal3.7458013.42114HepG2FUBP3
chr116611310066113152-3'-UTR,intron-Distal4.293743.07706HepG2TIAL1
chr116611293466113005-3'-UTR,intron-Distal3.5825215.85755HepG2LARP4
chr116611309466113146-3'-UTR,intron-Distal3.9945812.62814HepG2DDX55
chr116611290066112929-3'-UTR,intron-Distal3.406064.97764HepG2DDX55
chr116611328866113366-3'-UTR,intron-Distal3.3231920.32233HepG2LARP4
chr116611294266112994-3'-UTR,intron-Distal3.411356.74954HepG2GRSF1
chr116611288166113036-3'-UTR,intron-Distal5.1287625.90115HepG2UPF1
chr116611334666113391-3'-UTR,intron-Distal3.589137.24472HepG2DDX55
chr116611508866115150-5'-UTR,intron-Distal6.9631563.15735HepG2DDX3X
chr116611500266115088-5'-UTR,CDS,intron-Distal5.13114400.00000HepG2DDX3X
chr116611412666114178-CDS,intron-Distal4.3378715.34471HepG2RPS3
chr116611437666114428-CDS,intron-Distal5.9405115.60266HepG2LIN28B
chr116611398866114036-CDS,intron-Distal5.2187128.42003HepG2SND1
chr116611483666114877-CDS,intron-Distal3.271196.68057HepG2PCBP2
chr116611398966114041-CDS,intron-Distal5.0074313.37480HepG2RPS3
chr116611468166114704-CDS,intron-Distal3.6385316.54403HepG2SND1
chr116611422266114279-CDS,intron-Distal4.8491522.27195HepG2SND1
chr116611482566114866-CDS,intron-Distal4.1311314.81576HepG2SND1
chr116611443266114453-CDS,intron-Distal5.5007316.75285HepG2SND1
chr116611426966114344-CDS,intron-Distal3.7924416.54058HepG2LIN28B
chr116611490666115002-CDS,intron-Distal5.1644683.65216HepG2DDX3X
chr116611445366114489-CDS,intron-Distal6.3857229.48716HepG2SND1
chr116611404166114103-CDS,intron-Distal3.9839610.25087HepG2RPS3
chr116611460866114681-CDS,intron-Distal4.2279122.55021HepG2SND1
chr116611470466114739-CDS,intron-Distal3.3558615.14340HepG2SND1
chr116611448966114540-CDS,intron-Distal4.6819021.22852HepG2SND1
chr116611429166114332-CDS,intron-Distal4.3080421.69917HepG2SND1
chr116611403666114062-CDS,intron-Distal5.9727033.12253HepG2SND1
chr116611473966114783-CDS,intron-Distal4.3008215.67268HepG2SND1
chr116611480966114860-CDS,intron-Distal4.7113920.46052HepG2RPS3
chr116611480966114870-CDS,intron-Distal4.7334439.45967HepG2DDX3X
chr116611406266114090-CDS,intron-Distal5.5482528.52956HepG2SND1
chr116611444366114492-CDS,intron-Distal4.2552510.27034HepG2RPS3
chr116611428466114332-CDS,intron-Distal3.9448514.52429HepG2RPS3
chr116611411766114144-CDS,intron-Distal5.6321318.87964HepG2SND1
chr116611458466114664-CDS,intron-Distal5.3673219.50047HepG2RPS3
chr116611434466114376-CDS,intron-Distal3.031803.96176HepG2LIN28B
chr116611415366114181-CDS,intron-Distal4.9601516.22741HepG2SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for B3GNT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for B3GNT1 is not available on ENCORE database.

  • 91 RBPs can affect the levels of B3GNT1.  








The Knockdown/knockout RNA-Seq assay for B3GNT1 is not available on ENCORE database.





91 RBPs can affect the gene expression of B3GNT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
B3GNT1ENSG00000174684.61177.460401497.34680-0.346702.431001.54830HepG2ABCF1
B3GNT1ENSG00000174684.6857.386301591.23830-0.8921027.2109025.76410HepG2ACO1
B3GNT1ENSG00000174684.61311.08430913.743100.520804.928503.64940HepG2ADAR
B3GNT1ENSG00000174684.61063.301701598.64240-0.5883011.7224010.28810HepG2AKAP8L
B3GNT1ENSG00000174684.61772.377602296.43280-0.373702.972802.15970HepG2ASCC1
B3GNT1ENSG00000174684.6623.85750820.43670-0.395202.811902.20900HepG2BOP1
B3GNT1ENSG00000174684.6944.944402181.80840-1.2072023.7480021.78080HepG2CIRBP
B3GNT1ENSG00000174684.6513.659801016.83850-0.985207.805206.53150HepG2CNOT7
B3GNT1ENSG00000174684.6937.923501232.69900-0.394303.888002.58370HepG2CPSF7
B3GNT1ENSG00000174684.6487.41960937.03560-0.9429016.8629014.53280HepG2YBX3
B3GNT1ENSG00000174684.6500.113401142.20040-1.1915013.9112010.72350HepG2CSTF2T
B3GNT1ENSG00000174684.61144.287701471.62760-0.363005.580204.44760HepG2DDX19B
B3GNT1ENSG00000174684.6989.178401230.16090-0.314502.310301.68280HepG2DDX21
B3GNT1ENSG00000174684.61697.957002658.52920-0.646807.569406.58100HepG2DDX3X
B3GNT1ENSG00000174684.6870.395801151.46500-0.403703.287701.87840HepG2DDX47
B3GNT1ENSG00000174684.6770.034401221.99890-0.666204.597903.62800HepG2DDX55
B3GNT1ENSG00000174684.61558.853002284.34460-0.551304.850104.05290HepG2DDX6
B3GNT1ENSG00000174684.61109.742301522.36140-0.456107.114806.12550HepG2DKC1
B3GNT1ENSG00000174684.61158.59880920.088700.332403.376002.60450HepG2DNAJC21
B3GNT1ENSG00000174684.6683.90740911.97860-0.415205.475104.60310HepG2DNAJC2
B3GNT1ENSG00000174684.6820.687001133.10330-0.465402.900701.76420HepG2AGO1
B3GNT1ENSG00000174684.6718.347801135.56660-0.660708.866406.92410HepG2EIF2S2
B3GNT1ENSG00000174684.6519.66080928.01080-0.836605.410904.17840HepG2EIF3D
B3GNT1ENSG00000174684.61394.423002425.86680-0.798809.603308.42370HepG2EIF4A3
B3GNT1ENSG00000174684.6519.453602362.48360-2.1852043.5518041.06390HepG2EIF4B
B3GNT1ENSG00000174684.61299.220901850.31210-0.510109.377508.01260HepG2EIF4G1
B3GNT1ENSG00000174684.62016.258602535.03960-0.330304.589503.85060HepG2ETF1
B3GNT1ENSG00000174684.61293.167401554.84730-0.265902.084401.36070HepG2EWSR1
B3GNT1ENSG00000174684.6972.405401511.87790-0.636706.023904.93100HepG2FIP1L1
B3GNT1ENSG00000174684.61134.449901478.62710-0.382303.539602.65550HepG2FUBP3
B3GNT1ENSG00000174684.61507.547502448.48860-0.699708.847907.67250HepG2FXR1
B3GNT1ENSG00000174684.61624.929902270.86370-0.482904.198903.38760HepG2G3BP1
B3GNT1ENSG00000174684.6565.95960826.23130-0.545802.262401.45950HepG2GEMIN5
B3GNT1ENSG00000174684.61145.38710853.745500.423902.783302.14060HepG2GPKOW
B3GNT1ENSG00000174684.6324.83730928.90350-1.5158028.3946026.72690HepG2HNRNPA1
B3GNT1ENSG00000174684.62977.123102300.549100.371803.433802.65840HepG2HNRNPK
B3GNT1ENSG00000174684.61970.274601708.399100.205702.600901.94690HepG2HNRNPL
B3GNT1ENSG00000174684.6739.357401042.90070-0.496305.355104.07860HepG2HNRNPM
B3GNT1ENSG00000174684.61603.053602308.11670-0.525905.329004.41920HepG2IGF2BP2
B3GNT1ENSG00000174684.61217.536102166.73920-0.831603.440002.34370HepG2IGF2BP3
B3GNT1ENSG00000174684.61214.482102449.34740-1.0121014.0297012.60100HepG2MAGOH
B3GNT1ENSG00000174684.6673.67940971.14580-0.527602.544101.53240HepG2METAP2
B3GNT1ENSG00000174684.61404.281001859.71920-0.405305.141904.10700HepG2NOL12
B3GNT1ENSG00000174684.61038.46930722.468200.523404.372403.43720HepG2NSUN2
B3GNT1ENSG00000174684.61739.231402244.40360-0.367902.764002.04270HepG2PABPC4
B3GNT1ENSG00000174684.6790.237301015.96090-0.362503.905602.91780HepG2PARN
B3GNT1ENSG00000174684.61270.417102231.76900-0.8129025.0561023.53830HepG2PCBP1
B3GNT1ENSG00000174684.6494.85870911.96200-0.882006.170703.93860HepG2PNPT1
B3GNT1ENSG00000174684.61445.691301102.182300.391305.323004.28530HepG2PRPF4
B3GNT1ENSG00000174684.61138.518102270.86550-0.9961035.5175034.00230HepG2PTBP1
B3GNT1ENSG00000174684.62313.502901884.551500.295804.987404.23840HepG2PUM1
B3GNT1ENSG00000174684.61108.820201620.76670-0.5477011.5983010.48650HepG2PUS1
B3GNT1ENSG00000174684.61589.217202459.49480-0.6300012.6588011.46430HepG2QKI
B3GNT1ENSG00000174684.6286.984001311.45830-2.1921028.2578026.24440HepG2RAVER1
B3GNT1ENSG00000174684.61022.322801481.18370-0.534907.222605.92690HepG2RBM15
B3GNT1ENSG00000174684.61122.987502118.79790-0.9159025.4610024.20920HepG2RBM22
B3GNT1ENSG00000174684.61502.934802527.29090-0.7498021.7366020.50140HepG2NELFE
B3GNT1ENSG00000174684.61928.631402353.76340-0.287404.082103.35170HepG2RECQL
B3GNT1ENSG00000174684.6758.557101081.96670-0.512304.896904.02210HepG2RPLP0
B3GNT1ENSG00000174684.61739.943401289.007400.432702.318901.45310HepG2RPS10
B3GNT1ENSG00000174684.6580.70960931.94310-0.682405.051804.02320HepG2RRP9
B3GNT1ENSG00000174684.6599.86420914.05780-0.607609.686408.59520HepG2SAFB2
B3GNT1ENSG00000174684.6606.97920906.21370-0.578203.544802.47780HepG2SERBP1
B3GNT1ENSG00000174684.61859.210501463.971000.344702.020901.44310HepG2SF3A3
B3GNT1ENSG00000174684.61645.536902364.34100-0.5229011.6000010.51970HepG2SF3B4
B3GNT1ENSG00000174684.62343.177201702.246600.4609011.2940010.03490HepG2SLBP
B3GNT1ENSG00000174684.6919.543002393.05810-1.3799072.3283070.66380HepG2SRFBP1
B3GNT1ENSG00000174684.61537.042302467.82870-0.6831019.9701018.94540HepG2SRSF1
B3GNT1ENSG00000174684.62023.916301752.847000.207302.254701.68250HepG2SRSF5
B3GNT1ENSG00000174684.61258.028702007.68310-0.6744018.4553017.25960HepG2SRSF9
B3GNT1ENSG00000174684.61761.223002077.66040-0.238403.070902.53660HepG2SSB
B3GNT1ENSG00000174684.6883.584801225.70200-0.472202.433801.31010HepG2SUB1
B3GNT1ENSG00000174684.61584.814801993.45400-0.331005.322804.51040HepG2SUCLG1
B3GNT1ENSG00000174684.61535.960802218.09360-0.530209.634508.69020HepG2TAF15
B3GNT1ENSG00000174684.61574.98290794.263200.9875016.7642015.23840HepG2TARDBP
B3GNT1ENSG00000174684.61605.324401046.546600.617102.563501.53330HepG2TBRG4
B3GNT1ENSG00000174684.61635.162102038.21830-0.317903.205302.30990HepG2TIA1
B3GNT1ENSG00000174684.61230.876301006.262700.290603.138602.54650HepG2TRIM56
B3GNT1ENSG00000174684.6512.50430737.32170-0.524703.107101.45710HepG2TROVE2
B3GNT1ENSG00000174684.62400.535401734.396700.468804.937103.73370HepG2TUFM
B3GNT1ENSG00000174684.6692.981001293.10510-0.9000010.267609.04090HepG2U2AF1
B3GNT1ENSG00000174684.6803.096201253.47410-0.6423011.7777010.67730HepG2UTP3
B3GNT1ENSG00000174684.6806.755201290.34340-0.677604.664303.01540HepG2XRCC5
B3GNT1ENSG00000174684.61256.555001087.714400.208102.017501.43000HepG2ZC3H8
B3GNT1ENSG00000174684.61258.073701427.90100-0.182701.869301.39570HepG2ZNF622
B3GNT1ENSG00000174684.6195.06080116.749400.740403.594002.84560K562AKAP8L
B3GNT1ENSG00000174684.6126.8671065.382800.956203.294502.34050K562BOP1
B3GNT1ENSG00000174684.6138.9132069.511000.998804.126903.16810K562CPSF6
B3GNT1ENSG00000174684.6115.76530168.50700-0.541602.141901.55710K562DDX47
B3GNT1ENSG00000174684.6158.6998070.744501.165505.365404.16820K562FMR1
B3GNT1ENSG00000174684.685.03690162.02120-0.930004.553403.80410K562FXR1
B3GNT1ENSG00000174684.6116.0311066.358100.806102.515501.75580K562GPKOW
B3GNT1ENSG00000174684.6258.07620174.373000.565502.468601.75260K562GRSF1
B3GNT1ENSG00000174684.699.64830159.65650-0.680102.836501.75060K562HNRNPA1
B3GNT1ENSG00000174684.6104.6041056.681800.883902.311401.46680K562KRR1
B3GNT1ENSG00000174684.6140.0007081.451700.781302.604401.36400K562NONO
B3GNT1ENSG00000174684.668.91580118.28830-0.779402.902402.22480K562PTBP1
B3GNT1ENSG00000174684.6103.84440157.82510-0.603902.145401.31200K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for B3GNT1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of B3GNT1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for B3GNT1 is not avaliable on ENCORE database.