APBA2

General Information

Gene Name       : APBA2
Gene ID             : ENSG00000034053.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: APBA2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878APBA2ENSG00000034053.140.000.000.00ENCSR000AEF
HepG2APBA2ENSG00000034053.141.920.541.23ENCSR985KAT
K562APBA2ENSG00000034053.1418.1811.5214.85ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for APBA2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • APBA2 RNA is bound by 33 proteins.  







eCLIP assay for APBA2 is not avaliable on ENCORE database.





33 proteins are bound to APBA2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr152934604529346078+3'-UTR,intron-Proximal4.013063.01428K562UCHL5
chr152934604529346158+3'-UTR,CDS,intron-Proximal3.464368.21285K562ZNF622
chr152921384829213945+5'-UTR,intron-Proximal4.371747.13477K562DDX3X
chr152939763429397668+CDS3.098873.02345K562ZNF622
chr152934633129346389+CDS3.391103.95937K562UCHL5
chr152934677629346863+CDS3.410864.59873K562UCHL5
chr152938532429385381+CDS3.512846.25299K562ZNF622
chr152939384329393987+CDS3.828453.25205K562GRWD1
chr152934666429346703+CDS4.021033.32022K562UCHL5
chr152939746029397592+CDS,intron-Distal,intron-Proximal3.551155.89284K562RBM15
chr152934647829346529+CDS4.395614.55944K562ZNF622
chr152940602729406117+CDS,intron-Proximal4.569207.39218K562SF3B4
chr152940322429403294+intron-Distal3.280814.41086K562DROSHA
chr152923691029236944+intron-Distal3.447663.31097K562SLTM
chr152921750329217554+intron-Distal4.012223.28572K562HNRNPM
chr152923854329238605+intron-Distal4.469853.75568K562SLTM
chr152940086029400908+intron-Distal3.531763.93915K562EWSR1
chr152940774229407796+intron-Distal5.567228.52451K562EIF4G2
chr152939587429395934+intron-Distal3.604344.53578K562AKAP8L
chr152924113929241196+intron-Distal4.244423.75920K562SLTM
chr152934849529348581+intron-Distal3.823833.08243K562ILF3
chr152940791229407967+intron-Distal3.009485.09687K562EIF4G2
chr152923337429233445+intron-Distal3.146793.43191K562YWHAG
chr152940233529402375+intron-Distal3.415294.25667K562CSTF2T
chr152923345829233521+intron-Distal3.447663.90201K562SLTM
chr152940776729407842+intron-Distal3.679953.15535K562EWSR1
chr152930948829309555+intron-Distal5.148566.57566K562PTBP1
chr152920999729210086+intron-Distal5.114706.53047K562AGGF1
chr152923347429233526+intron-Distal3.861863.08087K562YWHAG
chr152923668829236726+intron-Distal3.672674.49353K562SLTM
chr152940710629407247+intron-Distal4.448935.18738K562TARDBP
chr152940775629407819+intron-Distal3.916906.88653K562CSTF2T
chr152940720629407324+intron-Distal5.688919.60017K562EWSR1
chr152923852529238570+intron-Distal3.809273.00828K562YWHAG
chr152940322629403297+intron-Distal4.036823.49140K562RBFOX2
chr152940627129406321+intron-Distal,intron-Proximal5.705649.50986K562EIF4G2
chr152939822229398351+intron-Distal4.389614.39969K562TARDBP
chr152940341829403488+intron-Distal3.538757.63581K562CSTF2T
chr152926139729261449+intron-Distal4.140085.16181K562PTBP1
chr152923738229237434+intron-Distal3.934665.08142K562SLTM
chr152923574429235767+intron-Distal4.240144.09073K562SLTM
chr152923380429233895+intron-Distal5.066177.47718K562SLTM
chr152940717329407281+intron-Distal5.5486911.62791K562CSTF2T
chr152940700729407130+intron-Distal5.4614710.97759K562EIF4G2
chr152914707529147168+intron-Distal5.422475.14653K562EIF4G2
chr152940791629407969+intron-Distal3.799626.67564K562CSTF2T
chr152940136429401427+intron-Distal3.986906.87384K562CSTF2T
chr152940291829403014+intron-Distal4.4338710.68597K562CSTF2T
chr152940319529403302+intron-Distal5.6342511.59176K562CSTF2T
chr152940317929403290+intron-Distal5.6358011.64683K562EWSR1
chr152940343929403568+intron-Distal3.837128.35508K562NONO
chr152940747629407523+intron-Distal3.688914.47051K562EWSR1
chr152940758529407650+intron-Distal4.097486.09610K562EWSR1
chr152927705829277173+intron-Distal3.600603.76275K562PTBP1
chr152940295129402997+intron-Distal3.740465.10737K562EWSR1
chr152940320429403280+intron-Distal3.222654.33160K562FUS
chr152940424529404341+intron-Distal4.230664.19401K562HNRNPK
chr152940530929405335+intron-Distal3.324243.93915K562EWSR1
chr152921697029217018+intron-Distal4.457253.01445K562EXOSC5
chr152940746829407530+intron-Distal3.303105.34585K562CSTF2T
chr152939640629396486+intron-Distal3.821405.03335K562UCHL5
chr152934849929348606+intron-Distal3.095583.20331K562CSTF2T
chr152934815429348250+intron-Distal4.394044.40356K562DGCR8
chr152923542529235475+intron-Distal5.096936.92427K562SLTM
chr152923723729237293+intron-Distal3.071023.30843K562SLTM
chr152940451729404553+intron-Distal3.361243.67595K562EWSR1
chr152923608429236159+intron-Distal3.865107.94428K562SLTM
chr152940323729403289+intron-Distal3.444764.28203K562DHX30
chr152923852329238657+intron-Distal3.904213.43228K562SAFB2
chr152940722129407285+intron-Distal4.126613.11728K562FAM120A
chr152923283329232892+intron-Distal4.587714.75882K562SLTM
chr152940582429405869+intron-Distal3.598204.20405K562EWSR1
chr152940790929407962+intron-Distal3.811475.27813K562EWSR1
chr152940733929407397+intron-Distal4.777437.47837K562CSTF2T
chr152940734929407405+intron-Distal3.748704.73842K562EWSR1
chr152927233329272444+intron-Distal3.611723.12651K562SAFB2
chr152940747829407533+intron-Distal4.8418211.32295K562EIF4G2
chr152921692129216945+intron-Distal4.007023.01456K562EXOSC5
chr152921084029210924+intron-Distal4.493914.36078K562GTF2F1
chr152940232729402427+intron-Distal3.504425.41408K562NONO
chr152933128329331424+intron-Distal5.170446.58769K562EIF4G2
chr152922337629223438+intron-Distal3.716973.06347K562NONO
chr152934826229348346+intron-Distal4.697885.11833K562DGCR8
chr152940387529403933+intron-Distal4.460483.99137K562NONO
chr152922542029225511+intron-Distal3.093993.61097K562ILF3
chr152940757429407641+intron-Distal6.5094815.43836K562EIF4G2
chr152939529629395358+intron-Distal4.088683.96990K562BUD13
chr152940736429407401+intron-Distal5.475928.04355K562EIF4G2
chr152940756329407645+intron-Distal4.220348.71856K562CSTF2T
chr152940440829404419+intron-Distal4.112493.87357K562EWSR1
chr152940295229403032+intron-Distal4.008854.74035K562FUS
chr152940364529403700+intron-Distal4.787466.70265K562EWSR1
chr152940635529406401+intron-Distal4.220344.48935K562CSTF2T
chr152923473429234798+intron-Distal4.947665.72435K562SLTM
chr152923505229235089+intron-Distal3.587714.19798K562SLTM
chr152931012129310195+intron-Distal4.685565.05386K562PTBP1
chr152934829529348341+intron-Distal5.161734.38825K562DROSHA
chr152923475329234794+intron-Distal4.107793.28264K562YWHAG
chr152940341229403492+intron-Distal4.035333.31384K562XRN2
chr152940714729407320+intron-Distal6.7085043.55473K562EIF4G2
chr152940343329403497+intron-Distal3.953098.84151K562EWSR1
chr152940342529403484+intron-Distal4.566173.75568K562SLTM
chr152940339229403521+intron-Distal3.483475.98857K562FUS
chr152940235829402414+intron-Distal4.062727.20278K562EWSR1
chr152921749329217534+intron-Distal4.457253.59909K562EXOSC5
chr152940682329406891+intron-Distal5.8597010.00047K562EIF4G2
chr152940136629401417+intron-Distal3.814685.54974K562EWSR1
chr152940386929403917+intron-Distal4.552725.01722K562CSTF2T
chr152936720929367295+intron-Proximal4.515953.85435K562PRPF8
chr152939873329398803+intron-Proximal5.506438.26501K562SF3B4
chr152940921029409258+intron-Proximal4.509484.35455K562EIF4G2
chr152940624329406290+intron-Proximal4.631823.77602K562DDX52
chr152936720729367284+intron-Proximal4.596846.48405K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for APBA2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for APBA2 is not available on ENCORE database.

  • 64 RBPs can affect the levels of APBA2.  








The Knockdown/knockout RNA-Seq assay for APBA2 is not available on ENCORE database.





64 RBPs can affect the gene expression of APBA2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
APBA2ENSG00000034053.1056.2205092.01930-0.710802.112301.56680HepG2ACO1
APBA2ENSG00000034053.10181.7388068.865601.399906.548705.76940HepG2AKAP1
APBA2ENSG00000034053.1021.7723054.12930-1.313902.040401.37000HepG2CIRBP
APBA2ENSG00000034053.1033.2758073.61520-1.145502.834502.14020HepG2CPSF6
APBA2ENSG00000034053.1023.7948053.60780-1.171802.426301.78720HepG2DDX21
APBA2ENSG00000034053.1035.0514083.59620-1.254003.176402.12970HepG2DDX59
APBA2ENSG00000034053.1039.6999088.03090-1.148903.715202.95270HepG2DKC1
APBA2ENSG00000034053.1086.8064037.700401.203104.604803.79900HepG2DNAJC2
APBA2ENSG00000034053.1038.3534095.09460-1.310004.994704.22910HepG2ETF1
APBA2ENSG00000034053.1035.3687079.63190-1.170903.049902.39310HepG2HNRNPLL
APBA2ENSG00000034053.1035.0859072.89290-1.054902.618401.83190HepG2MSI2
APBA2ENSG00000034053.1033.0869081.22600-1.295702.898501.90460HepG2MTPAP
APBA2ENSG00000034053.1027.8992070.61280-1.339702.988902.21180HepG2NSUN2
APBA2ENSG00000034053.1023.2794060.77040-1.384303.641502.76460HepG2PRPF4
APBA2ENSG00000034053.10208.0691067.893301.6156012.5975011.22780HepG2PUM2
APBA2ENSG00000034053.10169.0290079.480801.088505.655304.98110HepG2RBM22
APBA2ENSG00000034053.10125.5286042.504401.562207.271806.33140HepG2RPS19
APBA2ENSG00000034053.1043.3356094.91170-1.131003.351802.60800HepG2SF3A3
APBA2ENSG00000034053.1089.2090044.047501.018003.357202.65980HepG2SMN1
APBA2ENSG00000034053.1017.0890087.69850-2.359507.628806.32410HepG2SNRNP70
APBA2ENSG00000034053.10142.3860089.769300.665402.440601.95960HepG2SRFBP1
APBA2ENSG00000034053.1025.3374077.93880-1.621105.768705.08000HepG2SSB
APBA2ENSG00000034053.1010.2413063.20880-2.625707.009606.01180HepG2SUPV3L1
APBA2ENSG00000034053.1097.1454041.589101.223804.984804.27250HepG2TRIM56
APBA2ENSG00000034053.1017.9844062.22210-1.790704.310103.41090HepG2XRN2
APBA2ENSG00000034053.1025.0808059.96860-1.257603.190102.47790HepG2ZC3H8
APBA2ENSG00000034053.1020.8499092.57340-2.1506010.366009.47730HepG2ZNF622
APBA2ENSG00000034053.10734.790001067.46050-0.538804.581003.86040K562AQR
APBA2ENSG00000034053.10761.12060572.940500.409603.549902.01720K562BCCIP
APBA2ENSG00000034053.10780.04840553.671400.494404.007902.83650K562BCLAF1
APBA2ENSG00000034053.10815.56180503.853800.694704.936203.43130K562CCAR1
APBA2ENSG00000034053.101583.281001186.384500.416205.389803.80600K562CPEB4
APBA2ENSG00000034053.10637.26030456.811800.480203.807702.88760K562CPSF6
APBA2ENSG00000034053.10665.67890420.042200.664205.396303.84450K562CSTF2
APBA2ENSG00000034053.101326.362301038.960000.352203.987802.51670K562DDX21
APBA2ENSG00000034053.101777.814301227.372900.5344010.072208.91920K562DDX47
APBA2ENSG00000034053.10812.11600564.116800.525603.504801.98530K562DHX30
APBA2ENSG00000034053.10713.25130492.440500.534403.757102.68100K562EFTUD2
APBA2ENSG00000034053.101662.75870873.921100.9279019.5684017.91290K562EIF2S2
APBA2ENSG00000034053.10722.25120512.485000.494902.267201.36680K562EIF3A
APBA2ENSG00000034053.10723.74040527.061500.457402.470401.49930K562EIF3D
APBA2ENSG00000034053.10370.32680287.087000.367202.049301.35640K562EIF3G
APBA2ENSG00000034053.101865.592701501.948800.312703.266602.24870K562EIF4G2
APBA2ENSG00000034053.10896.74830651.747900.460303.796702.79370K562FIP1L1
APBA2ENSG00000034053.10614.16130464.840800.401802.393901.59660K562FMR1
APBA2ENSG00000034053.10110.25520288.51740-1.3878010.248508.72390K562G3BP2
APBA2ENSG00000034053.10771.62910493.724500.644104.408802.57700K562GEMIN5
APBA2ENSG00000034053.10777.85510419.151600.891908.269206.12870K562IGF2BP2
APBA2ENSG00000034053.10590.15760426.282900.469202.793401.59510K562IGF2BP3
APBA2ENSG00000034053.10589.13960440.385500.419702.970702.09930K562MAGOH
APBA2ENSG00000034053.101586.119101310.336000.275502.627401.74500K562MBNL1
APBA2ENSG00000034053.10640.75540425.713600.589805.170103.95100K562METAP2
APBA2ENSG00000034053.101381.389201199.995500.203002.155701.48870K562NSUN2
APBA2ENSG00000034053.10950.61420739.909200.361402.613001.81940K562PPIG
APBA2ENSG00000034053.10666.74700427.871600.639906.754105.75270K562PTBP1
APBA2ENSG00000034053.101336.575501638.71480-0.294002.173201.45170K562PUF60
APBA2ENSG00000034053.10562.75350410.208800.456003.129202.22940K562RBM22
APBA2ENSG00000034053.10592.65460431.695200.457103.027601.87880K562NELFE
APBA2ENSG00000034053.10739.58130487.985400.599803.873202.90510K562RPS19
APBA2ENSG00000034053.10578.12020399.752900.532203.152502.07420K562RPS3
APBA2ENSG00000034053.10416.60270299.860300.474303.157502.24280K562SF3B4
APBA2ENSG00000034053.10707.21920502.612100.492603.722202.48350K562SRFBP1
APBA2ENSG00000034053.10708.09060419.471000.755308.577407.33660K562SRSF1
APBA2ENSG00000034053.10640.33960385.899200.730506.913405.12900K562SRSF4
APBA2ENSG00000034053.10589.19070396.193800.572404.550703.14640K562SRSF5
APBA2ENSG00000034053.10743.25690424.501400.808008.647507.30660K562TARDBP
APBA2ENSG00000034053.10705.57630409.487600.784909.273707.66010K562TIA1
APBA2ENSG00000034053.10684.75950401.901400.768707.873805.77980K562TRA2A
APBA2ENSG00000034053.10790.77340490.920800.687705.975204.41740K562UCHL5
APBA2ENSG00000034053.101342.006801132.122900.245302.644701.81590K562WDR43
APBA2ENSG00000034053.10763.94370500.092400.611204.643802.92540K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for APBA2 is not available on ENCORE database.





1 RBPs can affect the splicing of APBA2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAPBA2ENSG00000034053.10chr15+2940527129405518294004722940059229406078294062190.310000.000770.01608includedK562U2AF2
SEAPBA2ENSG00000034053.10chr15+2939291729393151293906922939077929393801293939870.107000.001130.02213includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for APBA2 is not avaliable on ENCORE database.