YKT6

General Information

Gene Name       : YKT6
Gene ID             : ENSG00000106636.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: YKT6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878YKT6ENSG00000106636.741.4547.4444.45ENCSR000AEF
HepG2YKT6ENSG00000106636.740.0843.8141.95ENCSR985KAT
K562YKT6ENSG00000106636.752.7654.2053.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for YKT6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • YKT6 RNA is bound by 21 proteins.  







eCLIP assay for YKT6 is not avaliable on ENCORE database.





21 proteins are bound to YKT6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr74425187444251944+3'-UTR,CDS3.810806.07436K562IGF2BP2
chr74425286744252917+3'-UTR3.768386.97411K562AKAP1
chr74425314544253191+3'-UTR6.4635740.61271K562UPF1
chr74425247344252540+3'-UTR5.532449.25213HepG2UPF1
chr74425230344252418+3'-UTR6.2311021.19689HepG2AKAP1
chr74425272644252769+3'-UTR7.0951431.64897K562UPF1
chr74425268644252774+3'-UTR3.7313810.78728K562AKAP1
chr74425247444252542+3'-UTR4.034067.20393HepG2AKAP1
chr74425226844252307+3'-UTR6.6330344.93493K562UPF1
chr74425227244252405+3'-UTR5.3337810.80898HepG2PRPF4
chr74425226244252309+3'-UTR6.5431121.62031K562PUM2
chr74425179844251873+3'-UTR,CDS,intron-Proximal4.798914.90235K562SF3B4
chr74425233544252383+3'-UTR4.219997.06234K562PUM2
chr74425367744253716+3'-UTR4.393453.74891K562DDX55
chr74425348644253536+3'-UTR3.784253.54620HepG2LIN28B
chr74425339844253525+3'-UTR4.3371310.68918K562AKAP1
chr74425349944253589+3'-UTR3.509903.45995K562IGF2BP2
chr74425227044252383+3'-UTR3.934597.02443K562AKAP8L
chr74425283344252885+3'-UTR3.7951210.30908K562FAM120A
chr74425341244253471+3'-UTR6.4618238.80072K562UPF1
chr74425230744252422+3'-UTR6.59260400.00000K562UPF1
chr74425265944252716+3'-UTR7.8750451.45899K562UPF1
chr74425348644253502+3'-UTR4.5143818.03381K562LIN28B
chr74425378744253853+3'-UTR5.5714646.65156K562UPF1
chr74425231444252356+3'-UTR4.769257.90397K562PABPC4
chr74425255444252746+3'-UTR3.696737.47033HepG2GRSF1
chr74425220744252262+3'-UTR6.1572220.91387K562PUM2
chr74425184444251894+3'-UTR,CDS,intron-Proximal3.648813.57974K562IGF2BP1
chr74425226944252331+3'-UTR3.544873.85067HepG2FAM120A
chr74425282744252879+3'-UTR4.4248834.35553K562UPF1
chr74425201944252045+3'-UTR3.8056014.69144K562UPF1
chr74425259644252707+3'-UTR3.994959.35546K562DDX6
chr74425241944252467+3'-UTR4.4935714.32162K562FAM120A
chr74425242344252477+3'-UTR6.1871256.41795K562UPF1
chr74425062144250689+3'-UTR,CDS,intron-Distal,intron-Proximal3.125575.17928K562YBX3
chr74425260744252655+3'-UTR5.055497.10674HepG2UPF1
chr74425226744252312+3'-UTR5.7530619.84358K562FAM120A
chr74425230344252427+3'-UTR5.2493524.03851K562AKAP1
chr74425380844253844+3'-UTR3.803573.19379HepG2AKAP1
chr74425237544252435+3'-UTR6.4553423.96021HepG2UPF1
chr74425236044252419+3'-UTR4.9694338.97453K562FAM120A
chr74425350844253551+3'-UTR5.1215514.67356K562FAM120A
chr74425287944252929+3'-UTR5.0864330.49147K562UPF1
chr74425247744252552+3'-UTR5.7375541.39768K562UPF1
chr74425262644252659+3'-UTR7.6677541.95525K562UPF1
chr74425207244252118+3'-UTR5.7254831.01476K562UPF1
chr74425205244252122+3'-UTR5.602779.21129HepG2SUB1
chr74425231244252360+3'-UTR6.8852954.36819K562FAM120A
chr74425296644253027+3'-UTR5.4151435.45431K562UPF1
chr74425302744253075+3'-UTR5.6718134.63942K562UPF1
chr74425248144252534+3'-UTR4.2388913.07598K562FAM120A
chr74425288544252930+3'-UTR3.466049.71379K562FAM120A
chr74425259744252729+3'-UTR5.4639712.24108HepG2AKAP1
chr74425297744253063+3'-UTR4.186088.44905HepG2UPF1
chr74425231344252421+3'-UTR3.120555.95269HepG2GRSF1
chr74425257544252686+3'-UTR3.5029322.20319K562FAM120A
chr74425350244253541+3'-UTR5.1505020.51933K562LIN28B
chr74425255244252626+3'-UTR7.2140655.60142K562UPF1
chr74425227044252375+3'-UTR6.1379837.64715HepG2UPF1
chr74425231244252413+3'-UTR3.9261912.87348K562DDX6
chr74425200344252053+3'-UTR3.076134.00731K562UCHL5
chr74425347844253539+3'-UTR4.8105938.23088K562UPF1
chr74425270544252734+3'-UTR3.529315.09017HepG2UPF1
chr74425269444252748+3'-UTR3.3548411.29679K562FAM120A
chr74425246644252531+3'-UTR5.866588.48595K562AKAP1
chr74424059244240691+5'-UTR5.6542814.54204HepG2DDX3X
chr74424069144240774+5'-UTR,CDS6.0089510.32974HepG2DDX3X
chr74424061544240796+5'-UTR,CDS4.8111421.83339K562DDX3X
chr74424701344247037+CDS3.349043.86052K562YBX3
chr74424694744247091+CDS,intron-Proximal4.640614.97857HepG2AQR
chr74424417944244240+CDS3.600977.99373K562YBX3
chr74424424744244308+CDS,intron-Proximal5.001074.13847K562AQR
chr74424416644244179+CDS,intron-Proximal3.846463.43253K562YBX3
chr74424598444246042+CDS3.145844.96117K562YBX3
chr74424773644247889+CDS,intron-Proximal5.157478.26505HepG2PRPF8
chr74424609744246169+intron-Proximal4.594526.21813K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for YKT6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for YKT6 is not available on ENCORE database.

  • 87 RBPs can affect the levels of YKT6.  








The Knockdown/knockout RNA-Seq assay for YKT6 is not available on ENCORE database.





87 RBPs can affect the gene expression of YKT6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
YKT6ENSG00000106636.31719.523501305.964900.396803.000002.01700HepG2ABCF1
YKT6ENSG00000106636.31757.079101216.677200.5301011.4159010.35920HepG2ACO1
YKT6ENSG00000106636.31928.851101504.839800.358002.212201.73050HepG2AKAP1
YKT6ENSG00000106636.32369.703101896.412900.321304.495403.65680HepG2AUH
YKT6ENSG00000106636.31254.80260938.014700.419704.340803.39960HepG2CALR
YKT6ENSG00000106636.31944.393201182.931200.716909.011407.68380HepG2CIRBP
YKT6ENSG00000106636.31551.445001216.373500.350905.555804.67310HepG2CKAP4
YKT6ENSG00000106636.3814.076401165.16530-0.517302.698801.94410HepG2CNOT7
YKT6ENSG00000106636.3503.989901197.72180-1.2488021.6767019.98430HepG2CPSF6
YKT6ENSG00000106636.32163.754301451.264400.5761012.2312011.06690HepG2CELF1
YKT6ENSG00000106636.31491.70820976.147000.611707.523706.46190HepG2DDX21
YKT6ENSG00000106636.32188.822301441.431500.602606.295005.38930HepG2DDX3X
YKT6ENSG00000106636.3658.53380879.99840-0.418203.322702.25300HepG2DHX30
YKT6ENSG00000106636.31399.389101164.020300.265602.696802.02730HepG2DKC1
YKT6ENSG00000106636.31055.06730815.199200.372002.425701.56010HepG2EEF2
YKT6ENSG00000106636.31543.687701190.323800.374902.668602.08680HepG2EIF2S1
YKT6ENSG00000106636.3714.39130990.73470-0.471804.543003.06210HepG2EIF2S2
YKT6ENSG00000106636.31078.43010661.742100.704507.352805.94240HepG2EIF3D
YKT6ENSG00000106636.31791.675901315.344700.445803.259302.56720HepG2EIF4A3
YKT6ENSG00000106636.3637.659201280.86930-1.0063010.025408.75730HepG2EIF4B
YKT6ENSG00000106636.31204.070402177.39980-0.8547025.8265024.30870HepG2ETF1
YKT6ENSG00000106636.31581.435601188.876200.411504.260803.22350HepG2EWSR1
YKT6ENSG00000106636.32240.661601251.460700.8402012.2369010.93020HepG2IGF2BP2
YKT6ENSG00000106636.32421.774901663.737600.541504.235503.20230HepG2LARP4
YKT6ENSG00000106636.31892.500501327.904200.511004.647503.80330HepG2MAGOH
YKT6ENSG00000106636.31961.360201335.285600.554604.843004.02670HepG2MATR3
YKT6ENSG00000106636.31089.89340692.560000.654103.948702.69720HepG2METAP2
YKT6ENSG00000106636.31598.902201067.347100.583007.625606.34640HepG2MSI2
YKT6ENSG00000106636.31516.233501216.944200.317101.957801.34190HepG2PABPC4
YKT6ENSG00000106636.3892.342201127.60360-0.337603.676102.79670HepG2PRPF4
YKT6ENSG00000106636.31486.531501261.405500.236802.225301.72430HepG2PTBP1
YKT6ENSG00000106636.31856.365601477.006700.329703.071002.44880HepG2PUF60
YKT6ENSG00000106636.31160.389101366.21020-0.235601.924001.38820HepG2QKI
YKT6ENSG00000106636.32366.749901819.889900.379004.982204.33840HepG2RBM22
YKT6ENSG00000106636.31755.782801403.853200.322603.931403.30750HepG2NELFE
YKT6ENSG00000106636.32356.546601855.916300.344403.059202.34650HepG2RPLP0
YKT6ENSG00000106636.31180.12190643.924300.8739013.6586012.42520HepG2RPS19
YKT6ENSG00000106636.31005.48630646.246500.637606.166804.78020HepG2SERBP1
YKT6ENSG00000106636.33004.012501351.900801.1518015.7527014.06860HepG2SF3A3
YKT6ENSG00000106636.31840.815501313.350600.487008.524807.57590HepG2SF3B4
YKT6ENSG00000106636.31229.792301057.060900.218302.231701.64420HepG2SMN1
YKT6ENSG00000106636.32766.746402055.475100.428609.465108.68940HepG2SRFBP1
YKT6ENSG00000106636.32017.587801370.827300.5575011.9580011.12250HepG2SRSF1
YKT6ENSG00000106636.32095.253001784.597900.231402.778702.26520HepG2SSB
YKT6ENSG00000106636.31160.53550890.515500.382003.584902.52360HepG2SUPT6H
YKT6ENSG00000106636.3936.149901232.07970-0.396304.549203.85790HepG2TAF15
YKT6ENSG00000106636.31468.17860989.082200.569808.275307.49430HepG2TIAL1
YKT6ENSG00000106636.31169.34390997.827000.228702.029101.53200HepG2TRIM56
YKT6ENSG00000106636.31982.911701128.115900.8136011.9497010.61690HepG2U2AF1
YKT6ENSG00000106636.31391.672301198.930200.215002.142101.51500HepG2UPF1
YKT6ENSG00000106636.31866.744901157.518700.6894017.3018015.99460HepG2UTP3
YKT6ENSG00000106636.32278.079701318.592500.7887030.6271029.30880HepG2ZNF622
YKT6ENSG00000106636.3505.73870998.66760-0.981609.637207.14170HepG2ZRANB2
YKT6ENSG00000106636.32921.304302171.293000.428009.010708.06210K562AGGF1
YKT6ENSG00000106636.33230.018002385.976500.436905.250303.79370K562AKAP8
YKT6ENSG00000106636.33311.687702259.342000.551607.921206.76210K562AKAP8L
YKT6ENSG00000106636.36854.395202951.011301.2157035.2988033.40980K562AQR
YKT6ENSG00000106636.33207.361102370.618600.436007.664106.02580K562ATP5C1
YKT6ENSG00000106636.32054.276201441.649400.510806.848105.12070K562DDX3X
YKT6ENSG00000106636.33188.101402462.101300.372706.874505.91150K562DDX47
YKT6ENSG00000106636.31827.825901461.617100.322503.737202.15340K562DDX6
YKT6ENSG00000106636.33077.316502431.131000.339905.254503.99380K562DKC1
YKT6ENSG00000106636.32031.426101417.263100.519305.672104.33620K562EFTUD2
YKT6ENSG00000106636.31999.334702376.08560-0.249102.798702.07640K562EIF2S2
YKT6ENSG00000106636.31456.54090954.807200.609203.487102.34530K562EIF3A
YKT6ENSG00000106636.32661.946301517.553900.810609.629807.54810K562EIF3D
YKT6ENSG00000106636.31833.697001216.804100.591609.922808.41090K562EIF3G
YKT6ENSG00000106636.32079.177801506.128300.465105.089803.97440K562EIF4A3
YKT6ENSG00000106636.31121.065701356.31250-0.274802.635301.51980K562EIF4B
YKT6ENSG00000106636.32298.311101566.303300.5531010.951209.83360K562FXR1
YKT6ENSG00000106636.31087.325701404.23480-0.369002.072801.47310K562G3BP2
YKT6ENSG00000106636.31060.578001420.89140-0.421903.157101.61760K562GEMIN5
YKT6ENSG00000106636.32295.289601516.807900.597508.408107.01560K562GPKOW
YKT6ENSG00000106636.34146.535303166.329200.389004.820103.82440K562GRSF1
YKT6ENSG00000106636.32241.905701510.167400.569905.687604.29010K562HNRNPM
YKT6ENSG00000106636.33156.279202488.980900.342603.213802.36010K562HSPD1
YKT6ENSG00000106636.32073.897701602.146300.372202.487601.53160K562IGF2BP2
YKT6ENSG00000106636.33175.120202397.680200.405104.990103.81750K562KIF1C
YKT6ENSG00000106636.32138.808901683.351900.345403.432802.49100K562MAGOH
YKT6ENSG00000106636.33044.704802295.207500.407604.693203.18290K562MAK16
YKT6ENSG00000106636.32827.157601882.705300.586405.032803.72500K562NAA15
YKT6ENSG00000106636.32146.594001504.013500.513107.508105.51340K562NCBP2
YKT6ENSG00000106636.32887.422901665.688700.793604.321603.01180K562PABPN1
YKT6ENSG00000106636.31912.123601497.685900.352303.187002.13780K562PCBP2
YKT6ENSG00000106636.32508.203502084.272300.267001.994701.30180K562PPIG
YKT6ENSG00000106636.32570.726001379.157800.8983015.6293013.82810K562PRPF8
YKT6ENSG00000106636.31970.320401635.514800.268602.344301.72610K562PTBP1
YKT6ENSG00000106636.35551.600003537.606700.6500010.828409.20010K562PUF60
YKT6ENSG00000106636.34082.334602240.553000.8654016.9322015.63110K562PUS1
YKT6ENSG00000106636.33392.974102183.159500.6360011.6031010.40010K562RBM15
YKT6ENSG00000106636.32668.204101404.895900.9253013.5863011.75320K562RPS19
YKT6ENSG00000106636.33146.326301523.372201.046305.688803.76290K562SF1
YKT6ENSG00000106636.32995.118202049.861000.5470011.7791010.19570K562SF3A3
YKT6ENSG00000106636.32544.290201459.200400.802009.538207.90140K562SF3B4
YKT6ENSG00000106636.32673.385701749.410600.611702.481601.34450K562SNRNP200
YKT6ENSG00000106636.32408.664302100.130100.197702.554901.65020K562SRPK2
YKT6ENSG00000106636.32195.998501603.399200.453605.759504.74730K562SRSF1
YKT6ENSG00000106636.32040.027001622.638000.330102.566901.88300K562TARDBP
YKT6ENSG00000106636.31922.823301360.083900.499404.161702.76340K562U2AF1
YKT6ENSG00000106636.31771.188601405.022600.334003.277802.40500K562U2AF2
YKT6ENSG00000106636.33390.708902202.671700.6222019.1597017.45950K562UPF1
YKT6ENSG00000106636.33395.815202271.782600.579803.019001.64590K562UTP18
YKT6ENSG00000106636.32383.958501959.946400.282404.516503.45430K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for YKT6 is not available on ENCORE database.





5 RBPs can affect the splicing of YKT6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEYKT6ENSG00000106636.3chr7+442506214425072344247731442477974425184544253893-0.067000.000640.02640excludedK562PRPF8
SEYKT6ENSG00000106636.3chr7+4425044044250530442477344424779744250621442507230.066000.000000.00000includedHepG2RBM22
SEYKT6ENSG00000106636.3chr7+442506214425065244247731442477974425184544253893-0.119000.001030.03854excludedK562TARDBP
A5SSYKT6ENSG00000106636.3chr7+4424765844247860442476584424779744250621442508680.069000.000000.00000longerK562AQR
A5SSYKT6ENSG00000106636.3chr7+4425062144250868442506214425072344251845442538930.076000.000000.00000longerK562AQR
MXEYKT6ENSG00000106636.3chr7+4424598344246084442469864424709144244166442442494424773144247797-0.096000.001360.040432includedK562UCHL5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for YKT6 is not avaliable on ENCORE database.