XPC

General Information

Gene Name : XPC
Gene ID : ENSG00000154767.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: XPC)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	XPC	ENSG00000154767.14	19.86	24.71	22.29	ENCSR000AEF
HepG2	XPC	ENSG00000154767.14	19.14	19.58	19.36	ENCSR985KAT
K562	XPC	ENSG00000154767.14	39.31	36.82	38.06	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for XPC is not avaliable on ENCORE database.

Proteins bound to RNA

XPC RNA is bound by 22 proteins.

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eCLIP assay for XPC is not avaliable on ENCORE database.

22 proteins are bound to XPC RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	14199463	14199546	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.87074	12.22234	HepG2	PRPF8
chr3	14199700	14199910	-	3'-UTR,CDS,intron-Distal	3.65701	10.62736	K562	ZNF622
chr3	14200159	14200226	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.63745	9.91399	K562	UCHL5
chr3	14199684	14199789	-	3'-UTR,CDS,intron-Distal	4.40929	9.69911	HepG2	GRWD1
chr3	14193791	14193855	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.52514	9.23918	HepG2	PRPF8
chr3	14189329	14189408	-	intron-Distal,intron-Proximal	5.48456	9.23760	K562	AQR
chr3	14187024	14187102	-	3'-UTR,intron-Distal	4.52391	9.03593	K562	LIN28B
chr3	14211972	14212047	-	CDS,intron-Distal,intron-Proximal	4.43684	8.85033	K562	ZNF622
chr3	14208600	14208681	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.41611	8.83608	K562	AQR
chr3	14197783	14197857	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.40383	8.80228	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 71 entries

eCLIP assay for XPC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for XPC is not available on ENCORE database.
87 RBPs can affect the levels of XPC.

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The Knockdown/knockout RNA-Seq assay for XPC is not available on ENCORE database.

87 RBPs can affect the gene expression of XPC :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
XPC	ENSG00000154767.10	1478.63500	731.33420	1.01560	22.98120	21.80180	HepG2	TIAL1
XPC	ENSG00000154767.10	1407.20800	658.47890	1.09550	22.13070	20.65530	HepG2	RPS19
XPC	ENSG00000154767.10	1327.42450	2175.16230	-0.71250	18.50590	17.15930	K562	AGGF1
XPC	ENSG00000154767.10	761.03470	1566.18170	-1.04120	16.51720	13.52490	K562	HNRNPK
XPC	ENSG00000154767.10	459.44440	958.57750	-1.06100	14.78310	13.29320	HepG2	HNRNPK
XPC	ENSG00000154767.10	1803.79590	1159.48810	0.63740	14.27650	13.01040	HepG2	SRSF5
XPC	ENSG00000154767.10	2300.49000	1157.05870	0.99140	13.41960	12.33960	HepG2	AKAP1
XPC	ENSG00000154767.10	1956.66030	1011.54680	0.95170	12.60400	11.26800	HepG2	EIF4A3
XPC	ENSG00000154767.10	1178.95490	781.64370	0.59280	11.95470	10.76360	HepG2	SMN1
XPC	ENSG00000154767.10	744.95900	1370.78330	-0.87980	12.18180	10.60040	K562	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 96 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for XPC is not available on ENCORE database.

9 RBPs can affect the splicing of XPC :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	XPC	ENSG00000154767.10	chr3	-	14195378	14195533			14193834	14193916	14197834	14197995	0.61100	0.00000	0.00000	included	HepG2	HNRNPK
SE	XPC	ENSG00000154767.10	chr3	-	14195378	14195533			14193834	14193916	14197834	14197995	0.22800	0.00000	0.00000	included	K562	HNRNPK
A3SS	XPC	ENSG00000154767.10	chr3	-	14189407	14189608			14189407	14189501	14190061	14190231	0.11900	0.00000	0.00000	longer	K562	AQR
SE	XPC	ENSG00000154767.10	chr3	-	14189058	14189279			14188789	14188879	14189407	14189501	0.09100	0.00004	0.00342	included	K562	HNRNPK
SE	XPC	ENSG00000154767.10	chr3	-	14209756	14209880			14208668	14208753	14211937	14212114	-0.11600	0.00012	0.00307	excluded	K562	HNRNPC
SE	XPC	ENSG00000154767.10	chr3	-	14195378	14195533			14193834	14193916	14197834	14197995	0.07400	0.00025	0.03886	included	K562	RBM22
SE	XPC	ENSG00000154767.10	chr3	-	14195378	14195533			14193834	14193916	14197834	14197995	0.09900	0.00068	0.02803	included	K562	PRPF8
SE	XPC	ENSG00000154767.10	chr3	-	14209756	14209880			14208668	14208753	14211937	14212114	-0.07500	0.00090	0.03488	excluded	K562	HNRNPU
SE	XPC	ENSG00000154767.10	chr3	-	14195378	14195533			14193834	14193916	14197834	14197995	0.05800	0.00139	0.04843	included	K562	TARDBP
MXE	XPC	ENSG00000154767.10	chr3	-	14193834	14193916	14197834	14197995	14190313	14190448	14199510	14200392	0.12600	0.00267	0.05882	1included	K562	SBDS

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

XPC

General Information

Functions

Localization

Domains (AlphaFold: XPC)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for XPC is not avaliable on ENCORE database.

22 proteins are bound to XPC RNA:

eCLIP assay for XPC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for XPC is not available on ENCORE database.

87 RBPs can affect the gene expression of XPC :

The Knockdown/knockout RNA-Seq assay for XPC is not available on ENCORE database.

9 RBPs can affect the splicing of XPC :

The Knockdown/knockout RNA-Seq assay for XPC is not avaliable on ENCORE database.