URM1

General Information

Gene Name       : URM1
Gene ID             : ENSG00000167118.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: URM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878URM1ENSG00000167118.1019.1849.3234.25ENCSR000AEF
HepG2URM1ENSG00000167118.1036.9637.9737.47ENCSR985KAT
K562URM1ENSG00000167118.1065.4259.7762.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for URM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • URM1 RNA is bound by 16 proteins.  







eCLIP assay for URM1 is not avaliable on ENCORE database.





16 proteins are bound to URM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9131151557131151578+3'-UTR,CDS4.038303.46958K562YBX3
chr9131150130131150177+3'-UTR,CDS,intron-Proximal4.012754.07825K562YBX3
chr9131152477131152570+3'-UTR5.6404433.02693K562UPF1
chr9131152076131152157+3'-UTR4.123079.22467HepG2UPF1
chr9131150117131150201+3'-UTR,CDS,intron-Proximal5.3013617.16057HepG2PPIG
chr9131152252131152324+3'-UTR3.514574.71645HepG2GRSF1
chr9131152468131152551+3'-UTR4.7999020.16504HepG2UPF1
chr9131152692131152809+3'-UTR3.006125.06770HepG2LSM11
chr9131151567131151635+3'-UTR,CDS,intron-Proximal3.732676.46344HepG2PRPF8
chr9131152570131152689+3'-UTR3.9681929.07135K562UPF1
chr9131152915131152989+3'-UTR6.0820031.86877K562UPF1
chr9131152188131152252+3'-UTR4.3965310.16433HepG2UPF1
chr9131152551131152672+3'-UTR4.3837515.14460HepG2UPF1
chr9131152848131152910+3'-UTR5.624259.98451HepG2AKAP1
chr9131152726131152812+3'-UTR5.8976441.92096K562UPF1
chr9131152546131152674+3'-UTR4.1023915.97461K562AKAP1
chr9131150123131150194+3'-UTR,CDS,intron-Proximal3.635409.06911HepG2GRWD1
chr9131152191131152230+3'-UTR3.601138.21835K562UPF1
chr9131152071131152167+3'-UTR3.439396.07733HepG2HNRNPK
chr9131152232131152327+3'-UTR3.399337.36404HepG2AKAP1
chr9131152191131152315+3'-UTR3.8402712.51903K562FAM120A
chr9131152584131152694+3'-UTR4.0678110.19652HepG2AKAP1
chr9131152747131152799+3'-UTR4.779126.49490HepG2AKAP1
chr9131152243131152303+3'-UTR5.5901120.13550K562UPF1
chr9131152566131152665+3'-UTR3.658285.59440HepG2HNRNPK
chr9131152087131152153+3'-UTR5.355749.98451HepG2AKAP1
chr9131152930131152977+3'-UTR3.107183.56282HepG2AKAP1
chr9131152851131152915+3'-UTR5.4567325.40505K562UPF1
chr9131152850131152904+3'-UTR5.2112910.05440HepG2UPF1
chr9131152838131152885+3'-UTR4.361594.01795HepG2LARP4
chr9131152856131152908+3'-UTR4.768384.39606K562AKAP1
chr9131152468131152540+3'-UTR4.5730611.50899HepG2AKAP1
chr9131152740131152798+3'-UTR3.953183.28046HepG2ZC3H11A
chr9131133636131133697+5'-UTR,CDS,intron-Proximal4.467085.07098K562DDX3X
chr9131133651131133688+5'-UTR,CDS4.497743.28061K562DDX55
chr9131133646131133704+5'-UTR,CDS,intron-Proximal3.337363.64037HepG2NCBP2
chr9131150090131150117+CDS,intron-Proximal3.517716.13978HepG2PPIG
chr9131133668131133728+CDS,intron-Proximal3.485296.46344HepG2PRPF8
chr9131150089131150123+CDS,intron-Proximal3.583535.28199HepG2GRWD1
chr9131140331131140387+CDS,intron-Proximal3.083175.33987HepG2GRWD1
chr9131150026131150074+intron-Proximal4.149003.82050HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for URM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for URM1 is not available on ENCORE database.

  • 91 RBPs can affect the levels of URM1.  








The Knockdown/knockout RNA-Seq assay for URM1 is not available on ENCORE database.





91 RBPs can affect the gene expression of URM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
URM1ENSG00000167118.6533.93490722.31290-0.436004.730503.97540HepG2ACO1
URM1ENSG00000167118.6975.157901188.79580-0.285802.729002.04780HepG2AUH
URM1ENSG00000167118.6430.46380890.07140-1.0480014.8547013.62100HepG2BOP1
URM1ENSG00000167118.6514.26400700.59350-0.446103.391502.54850HepG2CALR
URM1ENSG00000167118.6632.79730962.86720-0.605605.257504.20930HepG2CIRBP
URM1ENSG00000167118.6569.91680722.21370-0.341703.282202.56830HepG2CKAP4
URM1ENSG00000167118.6777.42610541.574400.521402.508601.78250HepG2CNOT7
URM1ENSG00000167118.6836.230501015.02320-0.279502.148801.57110HepG2CELF1
URM1ENSG00000167118.6475.21280611.33610-0.363402.143701.53780HepG2DDX21
URM1ENSG00000167118.6405.00730598.63760-0.563704.665303.46840HepG2DDX24
URM1ENSG00000167118.6848.453001173.23240-0.467603.548802.85010HepG2DDX3X
URM1ENSG00000167118.6644.55370927.93120-0.525702.329801.43480HepG2DDX59
URM1ENSG00000167118.6760.77500576.443700.400204.577503.77490HepG2DNAJC2
URM1ENSG00000167118.6531.834001042.61420-0.971208.868207.67210HepG2EIF4B
URM1ENSG00000167118.6622.76760440.582100.499203.366102.36760HepG2GEMIN5
URM1ENSG00000167118.6572.77720926.35930-0.693605.963705.04900HepG2GPKOW
URM1ENSG00000167118.6780.77650587.194500.411002.964702.29790HepG2HNRNPA1
URM1ENSG00000167118.6730.320901002.94210-0.457603.310802.30070HepG2HNRNPA2B1
URM1ENSG00000167118.6791.950501015.38590-0.358502.277301.64010HepG2HNRNPK
URM1ENSG00000167118.61179.50340993.944800.246802.921902.23090HepG2HNRNPL
URM1ENSG00000167118.61008.70620777.051100.376303.286402.50280HepG2IGF2BP1
URM1ENSG00000167118.6767.759701018.58040-0.407802.857402.17290HepG2IGF2BP2
URM1ENSG00000167118.6973.81530662.744400.555109.375208.10650HepG2ILF2
URM1ENSG00000167118.6743.836701024.69130-0.462102.720101.72690HepG2KHSRP
URM1ENSG00000167118.6664.002001086.95460-0.711005.431404.57230HepG2MATR3
URM1ENSG00000167118.6878.107301112.49290-0.341302.048101.49890HepG2NCBP2
URM1ENSG00000167118.6318.64310495.06000-0.635702.901601.99140HepG2PABPC1
URM1ENSG00000167118.6736.09720990.44640-0.428202.963502.21880HepG2PABPC4
URM1ENSG00000167118.6817.853301038.96340-0.345203.769803.08460HepG2PCBP1
URM1ENSG00000167118.6420.68340673.38350-0.678703.604902.42670HepG2PCBP2
URM1ENSG00000167118.6367.24620524.41410-0.514003.396702.50960HepG2PRPF8
URM1ENSG00000167118.6824.759701057.17820-0.358203.840803.21940HepG2PTBP1
URM1ENSG00000167118.6707.560501032.96210-0.545905.309204.51670HepG2PUF60
URM1ENSG00000167118.6766.569501095.75780-0.515405.504704.57410HepG2PUM2
URM1ENSG00000167118.6783.267301144.96270-0.547706.993606.06570HepG2QKI
URM1ENSG00000167118.6734.693801176.54270-0.6793011.8469010.87720HepG2NELFE
URM1ENSG00000167118.6815.436101095.78080-0.426305.271204.45420HepG2RECQL
URM1ENSG00000167118.6462.10780638.50660-0.466502.130201.30120HepG2RPS10
URM1ENSG00000167118.6498.43570875.05230-0.812009.205207.99140HepG2SF3B1
URM1ENSG00000167118.6665.914401100.66960-0.7250012.9646011.83340HepG2SF3B4
URM1ENSG00000167118.6915.53620663.482200.464502.670501.73200HepG2SMNDC1
URM1ENSG00000167118.6757.35580411.809500.878902.690301.40420HepG2SNRNP200
URM1ENSG00000167118.6543.16880973.63830-0.842004.314503.32990HepG2SNRNP70
URM1ENSG00000167118.61014.663501288.48860-0.344704.260203.67760HepG2SRFBP1
URM1ENSG00000167118.6928.058101148.85640-0.307903.169502.67260HepG2SRSF1
URM1ENSG00000167118.6707.242601019.97530-0.528306.902805.97600HepG2SRSF5
URM1ENSG00000167118.6930.01760775.277200.262402.134801.51410HepG2SRSF7
URM1ENSG00000167118.6414.25220934.65220-1.1739029.3597027.93000HepG2SRSF9
URM1ENSG00000167118.6586.852901032.62490-0.8152013.9997012.88180HepG2TAF15
URM1ENSG00000167118.6701.50500948.85440-0.435704.221603.19800HepG2TIA1
URM1ENSG00000167118.6516.23270893.81390-0.792004.485903.69520HepG2U2AF1
URM1ENSG00000167118.6632.09490399.856500.660604.941203.92070HepG2UCHL5
URM1ENSG00000167118.6889.22760619.716000.520802.375001.45090HepG2UPF2
URM1ENSG00000167118.6841.68220698.821700.268302.194001.64720HepG2UTP3
URM1ENSG00000167118.61009.28720796.065000.342304.232703.59460HepG2ZNF622
URM1ENSG00000167118.61411.484901825.31950-0.370903.132401.81960K562ABCF1
URM1ENSG00000167118.6839.825301323.13730-0.655807.224105.79120K562BOP1
URM1ENSG00000167118.6938.337301271.43100-0.438303.243001.68000K562BUD13
URM1ENSG00000167118.6900.407101136.07800-0.335402.997001.42480K562CEBPZ
URM1ENSG00000167118.6943.031001406.90300-0.577107.788106.46240K562CPSF6
URM1ENSG00000167118.61911.430602336.88500-0.289902.691201.73010K562CELF1
URM1ENSG00000167118.61334.472301097.191900.282402.682901.82420K562DKC1
URM1ENSG00000167118.6698.17280935.72070-0.422503.216401.76040K562DNAJC21
URM1ENSG00000167118.6640.39350491.045800.383002.787401.98850K562EIF3G
URM1ENSG00000167118.61116.70840631.708600.8218011.560209.84810K562EIF4A3
URM1ENSG00000167118.61009.999601395.15910-0.466103.188101.42620K562ESF1
URM1ENSG00000167118.6641.12050866.75240-0.435002.926301.76240K562FKBP4
URM1ENSG00000167118.6908.167101213.24670-0.417803.192102.20530K562FTO
URM1ENSG00000167118.61101.00800656.950100.7449013.0549011.83810K562FXR1
URM1ENSG00000167118.6480.93190234.023101.039106.070302.95620K562FXR2
URM1ENSG00000167118.6154.50360428.54190-1.4718010.564509.00810K562G3BP2
URM1ENSG00000167118.6837.461501089.09930-0.379003.913302.56170K562GLRX3
URM1ENSG00000167118.61087.991301343.26890-0.304102.274901.55450K562GPKOW
URM1ENSG00000167118.6633.92520878.55880-0.470803.582301.89680K562KHDRBS1
URM1ENSG00000167118.6837.908801146.92450-0.452902.623201.71750K562KRR1
URM1ENSG00000167118.61397.897701012.394000.465403.906102.10280K562LIN28B
URM1ENSG00000167118.61046.61250707.814100.564206.418105.11230K562MAGOH
URM1ENSG00000167118.61113.665701272.27420-0.192101.996801.35060K562NSUN2
URM1ENSG00000167118.61296.955901700.31070-0.390702.899202.04670K562PCBP3
URM1ENSG00000167118.61057.876901304.15440-0.301902.539301.77510K562POLR2G
URM1ENSG00000167118.61134.07200853.876200.409303.110902.31490K562PRPF8
URM1ENSG00000167118.6847.67760687.694500.301602.167201.56800K562PTBP1
URM1ENSG00000167118.61793.254402161.27640-0.269302.738401.78410K562PUM2
URM1ENSG00000167118.6806.80830545.788900.563803.668802.49510K562RPS3
URM1ENSG00000167118.61630.878101162.164700.488705.592104.05340K562SAFB
URM1ENSG00000167118.61002.191801277.41350-0.350102.168401.31800K562SF3B1
URM1ENSG00000167118.61048.62400774.052900.437903.388402.22500K562SRFBP1
URM1ENSG00000167118.61009.94120674.182900.583006.489505.41770K562SRSF1
URM1ENSG00000167118.6677.32850526.799800.362502.259701.32690K562SRSF4
URM1ENSG00000167118.6376.79070506.51550-0.426802.891201.57960K562SSB
URM1ENSG00000167118.61115.551401721.57080-0.626007.559705.25960K562SSRP1
URM1ENSG00000167118.61026.937301574.58950-0.616606.272604.31280K562STAU1
URM1ENSG00000167118.61797.466101308.158800.458303.799002.83560K562SYNCRIP
URM1ENSG00000167118.6963.96410682.288900.498504.209603.33130K562TARDBP
URM1ENSG00000167118.61155.40200914.488900.337302.533701.63490K562TRIM56
URM1ENSG00000167118.61193.822801534.85810-0.362502.846901.43880K562TRIP6
URM1ENSG00000167118.6246.46740428.77740-0.798804.623703.59100K562U2AF2
URM1ENSG00000167118.6932.843701154.31520-0.307302.405801.58790K562WDR3
URM1ENSG00000167118.61029.285901200.32570-0.221802.092601.34970K562WDR43
URM1ENSG00000167118.61333.733201698.99630-0.349203.146002.21920K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for URM1 is not available on ENCORE database.





3 RBPs can affect the splicing of URM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEURM1ENSG00000167118.6chr9+1311498611311500021311402731311403851311500941311501760.105000.000000.00000includedK562SF3B4
SEURM1ENSG00000167118.6chr9+1311498611311500021311402401311403851311500941311501760.093000.000000.00000includedK562AQR
A3SSURM1ENSG00000167118.6chr9+1311402731311403851311403141311403851311336391311336940.086000.001110.04090longerK562U2AF2
A3SSURM1ENSG00000167118.6chr9+1311500681311501761311500941311501761311402401311403850.051000.000030.00031longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for URM1 is not avaliable on ENCORE database.