TRMT1

General Information

Gene Name       : TRMT1
Gene ID             : ENSG00000104907.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TRMT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRMT1ENSG00000104907.127.1622.1414.65ENCSR000AEF
HepG2TRMT1ENSG00000104907.1252.3131.6241.97ENCSR985KAT
K562TRMT1ENSG00000104907.1269.5157.0463.28ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
TRMT1Ribo-STAMP-293TshRNABGRSLV05-25,BGRSLV05-26BGRSLV05-1,BGRSLV05-2NotSatisfiedENCORE2
TRMT1Ribo-STAMP-293TshRNABGRSLV07-27,BGRSLV07-28BGRSLV07-1,BGRSLV07-2NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRMT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRMT1 RNA is bound by 11 proteins.  







eCLIP assay for TRMT1 is not avaliable on ENCORE database.





11 proteins are bound to TRMT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191322097613221011-3'-UTR,CDS,intron-Distal,intron-Proximal3.854815.30739HepG2BUD13
chr191322645713226482-3'-UTR,CDS,intron-Distal,intron-Proximal3.221195.74131HepG2PPIG
chr191322098313221019-3'-UTR,CDS,intron-Distal,intron-Proximal3.558823.77473HepG2PABPN1
chr191322097713221008-3'-UTR,CDS,intron-Distal,intron-Proximal4.919193.59565K562DDX24
chr191322097113221015-3'-UTR,CDS,intron-Distal,intron-Proximal3.4047310.84333HepG2PPIG
chr191322645913226500-3'-UTR,CDS,intron-Distal,intron-Proximal3.335094.24574HepG2PABPN1
chr191322723013227242-5'-UTR,intron-Distal,intron-Proximal3.995615.80295HepG2PPIG
chr191322742913227462-5'-UTR,intron-Distal,intron-Proximal4.641265.35117HepG2PRPF8
chr191322746613227473-5'-UTR,intron-Distal,intron-Proximal3.723454.41267HepG2PPIG
chr191321613913216254-CDS,intron-Distal,intron-Proximal4.4046710.26822HepG2PABPN1
chr191321625913216334-CDS,intron-Distal,intron-Proximal3.5137613.33793HepG2PRPF8
chr191322091713220973-CDS,intron-Distal,intron-Proximal3.371167.45900HepG2PRPF8
chr191321576713215814-CDS,intron-Distal4.215044.45558HepG2GRWD1
chr191321634413216413-CDS,intron-Distal3.795476.93667HepG2PPIG
chr191321629313216341-CDS,intron-Distal,intron-Proximal4.765443.72506HepG2PABPN1
chr191321608013216104-CDS,intron-Distal,intron-Proximal3.441593.03634HepG2PABPN1
chr191321856413218608-CDS,intron-Distal,intron-Proximal4.300014.01763HepG2GRWD1
chr191321842013218461-CDS,intron-Distal3.225963.65697HepG2PABPN1
chr191321615313216259-CDS,intron-Distal,intron-Proximal4.0838735.83215HepG2PRPF8
chr191321585413215895-CDS,intron-Distal3.893395.28701K562PRPF8
chr191321579713215817-CDS,intron-Distal3.402354.51483HepG2PABPN1
chr191321842513218464-CDS,intron-Distal4.349894.69071HepG2GRWD1
chr191321839013218436-CDS,intron-Distal,intron-Proximal3.915594.74268K562UCHL5
chr191321608613216102-CDS,intron-Distal3.685745.30777HepG2PPIG
chr191321629813216322-CDS,intron-Distal,intron-Proximal3.012714.40420HepG2PPIG
chr191321584513215895-CDS,intron-Distal4.387674.23295HepG2GRWD1
chr191321863313218658-CDS,intron-Distal4.365593.72506HepG2PABPN1
chr191321622413216305-CDS,intron-Distal,intron-Proximal3.784598.67867K562AQR
chr191321619313216272-CDS,intron-Distal,intron-Proximal4.315256.83823K562DDX24
chr191321618013216285-CDS,intron-Distal,intron-Proximal4.2356017.07938HepG2BUD13
chr191322072913220791-CDS,intron-Distal,intron-Proximal3.254985.99353HepG2PABPN1
chr191321617213216285-CDS,intron-Distal,intron-Proximal3.172655.56438K562BUD13
chr191321587313215894-CDS,intron-Distal3.482823.77473HepG2PABPN1
chr191322059113220655-CDS,intron-Distal,intron-Proximal3.6448613.07400HepG2BUD13
chr191321618213216220-CDS,intron-Distal,intron-Proximal3.9813010.14528HepG2PPIG
chr191322058913220651-CDS,intron-Distal,intron-Proximal3.8141620.52442HepG2PPIG
chr191321617713216275-CDS,intron-Distal,intron-Proximal3.641548.35379HepG2SF3A3
chr191321617713216235-CDS,intron-Distal,intron-Proximal3.9304711.06513HepG2AQR
chr191321619513216277-CDS,intron-Distal,intron-Proximal4.350856.81811K562UCHL5
chr191321608113216095-CDS,intron-Distal4.091953.12843K562PRPF8
chr191322061013220672-CDS,intron-Distal,intron-Proximal5.738118.08771HepG2EFTUD2
chr191322082113220929-intron-Distal,intron-Proximal6.5803611.90432HepG2EFTUD2
chr191321625813216284-intron-Distal,intron-Proximal4.177969.27186HepG2PPIG
chr191321622013216258-intron-Distal,intron-Proximal3.9743611.64759HepG2PPIG
chr191322084013220917-intron-Distal,intron-Proximal3.3709010.10185HepG2PRPF8
chr191322347613223519-intron-Distal,intron-Proximal5.087386.35567HepG2PRPF8
chr191322088713220938-intron-Distal,intron-Proximal4.076654.86737HepG2RBM22
chr191322313513223217-intron-Distal4.160703.49003K562PRPF8
chr191321623513216285-intron-Distal,intron-Proximal4.648419.33787HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRMT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRMT1 is not available on ENCORE database.

  • 94 RBPs can affect the levels of TRMT1.  








The Knockdown/knockout RNA-Seq assay for TRMT1 is not available on ENCORE database.





94 RBPs can affect the gene expression of TRMT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRMT1ENSG00000104907.81071.22850874.334900.292903.138702.49770HepG2ACO1
TRMT1ENSG00000104907.8494.14280364.311700.439702.487801.54110HepG2ADAR
TRMT1ENSG00000104907.81073.26720618.932800.794103.372702.33980HepG2BCCIP
TRMT1ENSG00000104907.8975.39520465.349701.0676016.0818014.81090HepG2BOP1
TRMT1ENSG00000104907.8649.74780822.59370-0.340301.977001.31680HepG2CIRBP
TRMT1ENSG00000104907.8844.90550439.817100.941806.891905.68510HepG2CNOT7
TRMT1ENSG00000104907.8515.26140373.605200.463703.610302.44560HepG2YBX3
TRMT1ENSG00000104907.81106.28330730.903300.597909.173408.12950HepG2CELF1
TRMT1ENSG00000104907.81003.54980785.914000.352604.229903.34390HepG2DAZAP1
TRMT1ENSG00000104907.8316.06510474.05690-0.584804.066103.25800HepG2DDX21
TRMT1ENSG00000104907.81001.89100608.624100.719002.703501.93680HepG2DDX55
TRMT1ENSG00000104907.8654.36310836.47410-0.354203.267402.54140HepG2DKC1
TRMT1ENSG00000104907.8555.24410363.623100.610606.221405.29960HepG2DNAJC2
TRMT1ENSG00000104907.8616.41410827.70470-0.425202.658002.07690HepG2EIF2S1
TRMT1ENSG00000104907.8661.53090856.16520-0.372102.183301.58970HepG2G3BP1
TRMT1ENSG00000104907.8626.66130407.190200.621903.526002.26730HepG2GRSF1
TRMT1ENSG00000104907.8552.98960372.163600.571203.132601.67780HepG2HNRNPA0
TRMT1ENSG00000104907.81117.12100867.417300.364902.545201.87420HepG2HNRNPK
TRMT1ENSG00000104907.8963.33710715.911600.428205.864004.91410HepG2HNRNPL
TRMT1ENSG00000104907.8329.47420462.08180-0.488002.176901.61200HepG2HNRNPLL
TRMT1ENSG00000104907.8665.92900409.226500.702409.771408.68650HepG2HNRNPU
TRMT1ENSG00000104907.8593.43360418.009500.505505.585204.57480HepG2ILF2
TRMT1ENSG00000104907.8501.40190644.82690-0.362902.368101.61650HepG2MSI2
TRMT1ENSG00000104907.8306.02850471.39960-0.623302.521101.59900HepG2MTPAP
TRMT1ENSG00000104907.81247.35760779.310000.6785010.796609.32470HepG2NOL12
TRMT1ENSG00000104907.8600.55650846.17210-0.494703.551002.73900HepG2PABPC4
TRMT1ENSG00000104907.8556.64730364.995500.608805.508904.49930HepG2PPIL4
TRMT1ENSG00000104907.81297.66710789.695000.7165017.6742016.44220HepG2PUM1
TRMT1ENSG00000104907.81046.55350789.121000.407203.796903.01620HepG2PUM2
TRMT1ENSG00000104907.8686.81300890.55120-0.374804.180803.45050HepG2PUS1
TRMT1ENSG00000104907.8721.11990983.99960-0.448402.386701.79950HepG2QKI
TRMT1ENSG00000104907.81000.27580817.570100.290902.200501.42550HepG2RBM15
TRMT1ENSG00000104907.8755.092801089.54710-0.529003.526502.96090HepG2RBM22
TRMT1ENSG00000104907.8552.87170893.09410-0.691906.864005.84190HepG2RBM25
TRMT1ENSG00000104907.8768.350901011.23330-0.396303.998203.36960HepG2NELFE
TRMT1ENSG00000104907.8563.60090435.604100.371602.248301.68840HepG2RPS19
TRMT1ENSG00000104907.8581.91830364.428000.675108.399507.36660HepG2SAFB2
TRMT1ENSG00000104907.8888.88900713.290200.317403.238502.48970HepG2SLBP
TRMT1ENSG00000104907.8777.77240424.974000.8719016.6836015.30780HepG2SMN1
TRMT1ENSG00000104907.8736.59300411.020600.841604.509503.26270HepG2SMNDC1
TRMT1ENSG00000104907.8344.16470508.87690-0.564202.541501.79300HepG2SNRNP70
TRMT1ENSG00000104907.8615.31410987.41450-0.6823010.683609.88730HepG2SRSF1
TRMT1ENSG00000104907.81088.28740734.503200.567108.853107.81590HepG2SRSF5
TRMT1ENSG00000104907.8602.48240803.35430-0.415104.103303.45620HepG2SRSF9
TRMT1ENSG00000104907.8896.27950651.500500.460102.571601.33430HepG2SSRP1
TRMT1ENSG00000104907.81141.97480835.337000.451006.478405.59720HepG2SUCLG1
TRMT1ENSG00000104907.8537.92340887.65570-0.722607.837306.97170HepG2TAF15
TRMT1ENSG00000104907.8600.26720815.49770-0.442103.749502.78340HepG2TIA1
TRMT1ENSG00000104907.8578.01770397.599900.539704.642604.02930HepG2TIAL1
TRMT1ENSG00000104907.8702.13660401.197200.8073012.9801011.88530HepG2TRIM56
TRMT1ENSG00000104907.8903.37040726.767000.313702.175701.40650HepG2TUFM
TRMT1ENSG00000104907.81087.91930769.266700.499902.696301.87050HepG2UBE2L3
TRMT1ENSG00000104907.8833.06820357.741501.2194013.1266011.50080HepG2UCHL5
TRMT1ENSG00000104907.8509.79470780.13860-0.613806.370505.38230HepG2UPF1
TRMT1ENSG00000104907.8930.01170753.191500.304102.862602.25680HepG2UTP3
TRMT1ENSG00000104907.8380.14040470.34790-0.307201.958401.37810HepG2ZC3H8
TRMT1ENSG00000104907.8687.91710858.00160-0.318703.373802.78680HepG2ZNF622
TRMT1ENSG00000104907.8914.36770771.671000.244701.888001.40200K562AGGF1
TRMT1ENSG00000104907.81000.69850802.955700.317502.189401.60590K562AKAP8L
TRMT1ENSG00000104907.82855.571902206.039900.372204.110002.54660K562APOBEC3C
TRMT1ENSG00000104907.81514.342702174.74990-0.522202.489501.92650K562AQR
TRMT1ENSG00000104907.81865.612301563.160700.255102.806301.69340K562CPEB4
TRMT1ENSG00000104907.82591.703303073.80790-0.246102.185101.31990K562CELF1
TRMT1ENSG00000104907.82444.104801617.799200.5952014.4306013.05820K562DDX47
TRMT1ENSG00000104907.81053.78500864.056200.286302.488701.66400K562DKC1
TRMT1ENSG00000104907.81708.209202115.08930-0.308203.876003.04750K562EIF2S2
TRMT1ENSG00000104907.8839.69870423.834900.9863015.9061013.93800K562EIF3G
TRMT1ENSG00000104907.81125.98320783.976700.522205.212004.08500K562EIF4A3
TRMT1ENSG00000104907.8318.80960453.43280-0.508203.633101.77880K562FASTKD2
TRMT1ENSG00000104907.8462.11980668.06190-0.531703.943202.91890K562FMR1
TRMT1ENSG00000104907.81548.93500815.297700.9258019.0661017.58980K562FXR1
TRMT1ENSG00000104907.856.43870246.79070-2.1285017.6708015.47130K562G3BP2
TRMT1ENSG00000104907.8732.568001100.97630-0.587706.589205.70800K562HNRNPC
TRMT1ENSG00000104907.81234.76230922.831500.420002.928601.96760K562HNRNPM
TRMT1ENSG00000104907.8801.80680486.209400.721602.897901.84070K562IGF2BP2
TRMT1ENSG00000104907.8662.61660494.375800.422502.395601.30930K562IGF2BP3
TRMT1ENSG00000104907.8375.19960535.27560-0.512602.599801.69890K562KRR1
TRMT1ENSG00000104907.81081.45020510.578801.0827019.9761017.53540K562MAGOH
TRMT1ENSG00000104907.8856.88990509.480900.750009.661207.82690K562MATR3
TRMT1ENSG00000104907.8700.76220454.214100.625504.534903.27430K562PCBP2
TRMT1ENSG00000104907.81057.884701556.98010-0.557605.104803.97340K562PCBP3
TRMT1ENSG00000104907.8984.573701194.23270-0.278502.117801.41780K562POLR2G
TRMT1ENSG00000104907.81595.754101273.653000.325202.490501.71660K562PPIG
TRMT1ENSG00000104907.81174.95960496.089801.2438028.0126025.99250K562PTBP1
TRMT1ENSG00000104907.81224.40260796.332700.620506.313505.53180K562PUS1
TRMT1ENSG00000104907.8117.81380235.43030-0.998804.139802.34060K562RAVER1
TRMT1ENSG00000104907.8932.61310775.888900.265301.953901.44060K562RBM15
TRMT1ENSG00000104907.8749.90150463.661100.693505.335103.21260K562RBM34
TRMT1ENSG00000104907.8842.89140500.406000.752103.366002.14700K562NELFE
TRMT1ENSG00000104907.81342.443901064.165700.335002.786001.69970K562SAFB
TRMT1ENSG00000104907.8458.60920256.447200.838508.655607.09960K562SF3B4
TRMT1ENSG00000104907.8810.91520486.379200.737405.700304.69150K562SRSF1
TRMT1ENSG00000104907.8670.28970459.461900.544702.470801.48530K562SRSF5
TRMT1ENSG00000104907.8267.55230437.17850-0.708402.660601.41170K562SSB
TRMT1ENSG00000104907.81017.446101346.30850-0.404103.018001.70410K562STAU1
TRMT1ENSG00000104907.81552.388301197.879800.373902.648801.84800K562SYNCRIP
TRMT1ENSG00000104907.8769.67080492.148700.645005.571404.54880K562TARDBP
TRMT1ENSG00000104907.8740.45380474.759000.641106.331505.01970K562TIA1
TRMT1ENSG00000104907.8754.05160466.113500.693905.822004.09920K562TRA2A
TRMT1ENSG00000104907.81768.012802464.67970-0.479305.546203.72580K562TROVE2
TRMT1ENSG00000104907.8154.19570246.92630-0.679304.017303.05030K562U2AF2
TRMT1ENSG00000104907.81515.675501753.30920-0.210102.201401.55590K562UPF1
TRMT1ENSG00000104907.8996.010801500.25790-0.591008.011006.47560K562WDR3
TRMT1ENSG00000104907.81540.084202450.36230-0.670003.578302.57300K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRMT1 is not available on ENCORE database.





18 RBPs can affect the splicing of TRMT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRMT1ENSG00000104907.8chr19-132264391322658213226092132262801322695913227463-0.208000.000000.00016excludedK562PRPF8
SETRMT1ENSG00000104907.8chr19-132207281322081513220582132206521322097113221120-0.573000.000000.00020excludedHepG2U2AF1
SETRMT1ENSG00000104907.8chr19-132264391322658213226092132262801322681013226866-0.058000.001040.07927excludedK562XRCC6
SETRMT1ENSG00000104907.8chr19-132264391322658213226092132262801322695913227463-0.274000.000740.01090excludedHepG2U2AF2
SETRMT1ENSG00000104907.8chr19-132207281322081513220582132206521322097113221120-0.267000.001130.04346excludedK562FXR1
SETRMT1ENSG00000104907.8chr19-132264391322658213226092132262801322681013226866-0.064000.001450.08823excludedHepG2DDX3X
SETRMT1ENSG00000104907.8chr19-132207281322081513220582132206521322097113221120-0.234000.000360.06926excludedK562HNRNPA1
SETRMT1ENSG00000104907.8chr19-1322072813220815132205821322065213220971132211200.297000.000040.07224includedK562CPEB4
A3SSTRMT1ENSG00000104907.8chr19-1322370913223882132237091322382513226092132262800.084000.000000.00000longerK562AQR
A3SSTRMT1ENSG00000104907.8chr19-1321856413218773132185641321867313220194132202800.059000.000000.00000longerK562AQR
A3SSTRMT1ENSG00000104907.8chr19-1322643913226641132264391322658213226810132268660.063000.000000.00000longerK562AQR
RITRMT1ENSG00000104907.8chr19-1322681013227245132268101322686613226959132272450.123000.000050.00117includedHepG2SF3A3
RITRMT1ENSG00000104907.8chr19-1322681013227245132268101322686613226959132272450.065000.000460.01372includedK562HNRNPC
RITRMT1ENSG00000104907.8chr19-1322681013227245132268101322686613226959132272450.143000.000190.00384includedHepG2PRPF8
RITRMT1ENSG00000104907.8chr19-1322681013227245132268101322686613226959132272450.058000.000890.01332includedK562PRPF8
RITRMT1ENSG00000104907.8chr19-1321608013216420132160801321621013216300132164200.439000.000090.00422includedHepG2FTO
RITRMT1ENSG00000104907.8chr19-1322681013227245132268101322686613226959132272450.103000.000000.00008includedK562RBM22
RITRMT1ENSG00000104907.8chr19-1321608013216420132160801321621013216300132164200.378000.005050.04436includedHepG2TAF15
RITRMT1ENSG00000104907.8chr19-1322681013227245132268101322686613226959132272450.196000.000000.00006includedHepG2U2AF1
RITRMT1ENSG00000104907.8chr19-1322681013227245132268101322686613226959132272450.100000.005590.07778includedHepG2TIAL1
RITRMT1ENSG00000104907.8chr19-1322681013227245132268101322686613226959132272450.096000.000220.00253includedHepG2SF3B4
RITRMT1ENSG00000104907.8chr19-1321608013216420132160801321621013216300132164200.233000.000070.00243includedHepG2FUBP3
RITRMT1ENSG00000104907.8chr19-1322681013227245132268101322686613226959132272450.099000.000000.00010includedK562EFTUD2
RITRMT1ENSG00000104907.8chr19-1321608013216420132160801321621013216300132164200.203000.000010.00009includedK562AQR
RITRMT1ENSG00000104907.8chr19-1322681013226973132268101322686613226949132269730.592000.005120.02938includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRMT1 is not avaliable on ENCORE database.