TRIM27

General Information

Gene Name : TRIM27
Gene ID : ENSG00000204713.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRIM27)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRIM27	ENSG00000204713.10	33.19	32.31	32.75	ENCSR000AEF
HepG2	TRIM27	ENSG00000204713.10	55.22	59.86	57.54	ENCSR985KAT
K562	TRIM27	ENSG00000204713.10	65.65	67.05	66.35	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
TRIM27	Ribo-STAMP-293T	shRNA			BGRSLV05-19,BGRSLV05-20	BGRSLV05-1,BGRSLV05-2		NotSatisfied	ENCORE2
TRIM27	Ribo-STAMP-293T	shRNA			BGRSLV07-25,BGRSLV07-26	BGRSLV07-1,BGRSLV07-2		NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRIM27 is not avaliable on ENCORE database.

Proteins bound to RNA

TRIM27 RNA is bound by 38 proteins.

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eCLIP assay for TRIM27 is not avaliable on ENCORE database.

38 proteins are bound to TRIM27 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	28887744	28887795	-	CDS,intron-Distal,intron-Proximal	4.74201	61.69360	HepG2	PRPF8
chr6	28887719	28887752	-	intron-Distal,intron-Proximal	7.52731	38.38600	K562	AQR
chr6	28876510	28876589	-	CDS,intron-Distal,intron-Proximal	4.91856	37.04116	K562	AQR
chr6	28887752	28887778	-	intron-Distal,intron-Proximal	5.94315	34.07967	K562	AQR
chr6	28887795	28887841	-	CDS,intron-Distal	3.49947	29.34896	HepG2	PRPF8
chr6	28887785	28887788	-	intron-Distal,intron-Proximal	4.95054	29.27906	K562	AQR
chr6	28879499	28879509	-	intron-Distal,intron-Proximal	6.12227	29.13448	HepG2	U2AF2
chr6	28876504	28876596	-	CDS,intron-Distal,intron-Proximal	4.34177	29.05547	K562	PRPF8
chr6	28872413	28872493	-	CDS,intron-Distal,intron-Proximal	4.87973	28.35245	HepG2	SF3B4
chr6	28879457	28879499	-	CDS,intron-Distal,intron-Proximal	4.23220	26.83015	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 135 entries

eCLIP assay for TRIM27 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRIM27 is not available on ENCORE database.
84 RBPs can affect the levels of TRIM27.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TRIM27 is not available on ENCORE database.

84 RBPs can affect the gene expression of TRIM27 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRIM27	ENSG00000204713.6	5561.35800	4022.40870	0.46730	20.59930	18.83580	K562	NSUN2
TRIM27	ENSG00000204713.6	5902.80520	3968.86590	0.57260	15.34750	13.54210	K562	SF3A3
TRIM27	ENSG00000204713.6	5722.54880	4265.03330	0.42400	10.76640	9.46520	K562	UPF1
TRIM27	ENSG00000204713.6	1311.76750	2117.84080	-0.69110	10.45930	9.27870	HepG2	RPLP0
TRIM27	ENSG00000204713.6	1844.81960	2692.21250	-0.54530	9.17920	7.75280	K562	POLR2G
TRIM27	ENSG00000204713.6	3166.87090	4066.16850	-0.36060	9.14590	7.55460	K562	SRPK2
TRIM27	ENSG00000204713.6	899.79080	1419.77230	-0.65800	8.52310	7.47960	HepG2	HNRNPA1
TRIM27	ENSG00000204713.6	2633.86640	3470.64630	-0.39800	8.33790	7.39110	HepG2	ETF1
TRIM27	ENSG00000204713.6	6738.48820	4556.33650	0.56450	8.24240	7.31740	K562	AQR
TRIM27	ENSG00000204713.6	1475.00090	892.31020	0.72500	8.47880	7.15140	HepG2	UCHL5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 93 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRIM27 is not available on ENCORE database.

11 RBPs can affect the splicing of TRIM27 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TRIM27	ENSG00000204713.6	chr6	-	28875012	28875039			28870778	28872442	28876584	28876617	-0.08100	0.00000	0.00001	excluded	K562	PRPF8
SE	TRIM27	ENSG00000204713.6	chr6	-	28875012	28875039			28870778	28872442	28876584	28876661	-0.10600	0.00000	0.00000	excluded	K562	AQR
A3SS	TRIM27	ENSG00000204713.6	chr6	-	28870778	28876617			28870778	28872442	28876749	28876865	-0.31700	0.00000	0.00000	shorter	K562	AQR
RI	TRIM27	ENSG00000204713.6	chr6	-	28870778	28876617			28870778	28872442	28876584	28876617	-0.60300	0.00000	0.00000	excluded	K562	PRPF8
RI	TRIM27	ENSG00000204713.6	chr6	-	28870778	28876617			28870778	28872442	28876584	28876617	-0.40200	0.00000	0.00000	excluded	K562	AQR
MXE	TRIM27	ENSG00000204713.6	chr6	-	28876749	28876865	28879472	28879495	28870778	28872442	28887788	28888019	-0.17300	0.00000	0.00000	2included	K562	AQR
MXE	TRIM27	ENSG00000204713.6	chr6	-	28876749	28876865	28879472	28879495	28876584	28876617	28887788	28888019	0.15700	0.00000	0.00000	1included	HepG2	U2AF2
SE	TRIM27	ENSG00000204713.6	chr6	-	28875012	28875039			28870778	28872442	28876584	28876617	-0.06000	0.00001	0.00085	excluded	K562	TARDBP
SE	TRIM27	ENSG00000204713.6	chr6	-	28874982	28875039			28872330	28872442	28876584	28876617	-0.07500	0.00003	0.00096	excluded	K562	SF3B4
SE	TRIM27	ENSG00000204713.6	chr6	-	28875012	28875039			28870778	28872442	28876584	28876617	-0.05200	0.00004	0.00463	excluded	HepG2	NCBP2

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRIM27

General Information

Functions

Localization

Domains (AlphaFold: TRIM27)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRIM27 is not avaliable on ENCORE database.

38 proteins are bound to TRIM27 RNA:

eCLIP assay for TRIM27 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRIM27 is not available on ENCORE database.

84 RBPs can affect the gene expression of TRIM27 :

The Knockdown/knockout RNA-Seq assay for TRIM27 is not available on ENCORE database.

11 RBPs can affect the splicing of TRIM27 :

The Knockdown/knockout RNA-Seq assay for TRIM27 is not avaliable on ENCORE database.