STAG1

General Information

Gene Name       : STAG1
Gene ID             : ENSG00000118007.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: STAG1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878STAG1ENSG00000118007.1214.2713.5813.93ENCSR000AEF
HepG2STAG1ENSG00000118007.128.1313.3010.71ENCSR985KAT
K562STAG1ENSG00000118007.125.876.095.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for STAG1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • STAG1 RNA is bound by 23 proteins.  







eCLIP assay for STAG1 is not avaliable on ENCORE database.





23 proteins are bound to STAG1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3136141793136141815-3'-UTR,CDS,intron-Distal,intron-Proximal4.461593.89826HepG2BCLAF1
chr3136240212136240259-3'-UTR,CDS,intron-Distal4.291077.53358HepG2BCLAF1
chr3136240063136240113-3'-UTR,CDS,intron-Distal3.761625.97823HepG2BCLAF1
chr3136141672136141699-3'-UTR,CDS,intron-Distal,intron-Proximal4.570615.03746HepG2BCLAF1
chr3136237228136237271-3'-UTR,CDS,intron-Distal,intron-Proximal3.598114.36528HepG2U2AF2
chr3136240136136240200-3'-UTR,CDS,intron-Distal5.1301112.89578HepG2BCLAF1
chr3136287605136287629-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.043453.16051HepG2PPIG
chr3136152412136152435-3'-UTR,CDS,intron-Distal4.067343.06595HepG2BCLAF1
chr3136141850136141906-3'-UTR,CDS,intron-Distal,intron-Proximal3.455413.91876HepG2U2AF2
chr3136261008136261038-3'-UTR,CDS,intron-Distal,intron-Proximal5.150847.95223HepG2BCLAF1
chr3136183736136183781-3'-UTR,CDS,intron-Distal3.687844.51739HepG2BCLAF1
chr3136349717136349761-3'-UTR,5'-UTR,CDS,intron-Distal3.730924.09885HepG2BCLAF1
chr3136287607136287622-3'-UTR,5'-UTR,CDS,intron-Distal4.630114.37348HepG2BCLAF1
chr3136260959136260989-3'-UTR,CDS,intron-Distal,intron-Proximal3.495385.15500HepG2BCLAF1
chr3136323303136323316-5'-UTR,CDS,intron-Distal,intron-Proximal3.498593.27569HepG2BCLAF1
chr3136287686136287703-5'-UTR,CDS,intron-Distal3.938445.79432HepG2BCLAF1
chr3136323198136323316-5'-UTR,CDS,intron-Distal,intron-Proximal3.619103.79741HepG2GRWD1
chr3136323147136323183-5'-UTR,CDS,intron-Distal,intron-Proximal5.395028.86847HepG2BCLAF1
chr3136323183136323261-5'-UTR,CDS,intron-Distal3.325997.33138HepG2BCLAF1
chr3136471033136471089-5'-UTR,intron-Distal4.039585.52342HepG2PPIG
chr3136342005136342083-5'-UTR,CDS,intron-Distal4.049053.80193HepG2GRWD1
chr3136341988136342029-5'-UTR,CDS,intron-Distal3.306924.74886HepG2BCLAF1
chr3136471123136471220-5'-UTR,intron-Distal,intron-Proximal3.509338.64056HepG2NCBP2
chr3136433699136433737-intron-Distal3.113204.63037HepG2HNRNPC
chr3136392906136392950-intron-Distal5.153955.77028HepG2PCBP2
chr3136282045136282143-intron-Distal4.232043.16986HepG2QKI
chr3136441432136441486-intron-Distal3.473966.32706HepG2FAM120A
chr3136227810136227848-intron-Distal3.872343.09122HepG2PTBP1
chr3136413601136413768-intron-Distal4.5716111.22811HepG2PTBP1
chr3136223713136223876-intron-Distal4.459325.68841K562KHSRP
chr3136414771136414805-intron-Distal3.906327.83767HepG2CSTF2
chr3136433737136433753-intron-Distal4.531215.47721HepG2HNRNPC
chr3136225085136225144-intron-Distal5.257807.62903HepG2QKI
chr3136236802136236875-intron-Distal,intron-Proximal3.606333.23847HepG2CSTF2
chr3136227875136227950-intron-Distal3.542223.83822HepG2PTBP1
chr3136215567136215640-intron-Distal3.912613.28841HepG2PTBP1
chr3136470428136470447-intron-Distal4.586433.46375HepG2XRN2
chr3136465582136465634-intron-Distal3.647833.00349HepG2ILF3
chr3136427121136427212-intron-Distal4.051783.92684K562KHSRP
chr3136438373136438498-intron-Distal3.900993.17235HepG2HNRNPK
chr3136212452136212503-intron-Distal4.321285.26580HepG2HNRNPC
chr3136467015136467086-intron-Distal3.137453.80809HepG2ILF3
chr3136468640136468729-intron-Distal3.133843.51437HepG2QKI
chr3136399342136399399-intron-Distal4.1974110.68100HepG2PCBP2
chr3136470394136470449-intron-Distal4.512164.69805HepG2NKRF
chr3136470941136470999-intron-Distal3.721358.83513HepG2CSTF2T
chr3136234290136234376-intron-Distal4.406438.08030HepG2QKI
chr3136470684136470751-intron-Distal3.440896.13981HepG2CSTF2T
chr3136238415136238478-intron-Distal5.188038.14620HepG2PTBP1
chr3136450623136450664-intron-Distal3.373683.31508HepG2HNRNPM
chr3136470435136470515-intron-Distal5.027714.90578HepG2HNRNPM
chr3136470933136470996-intron-Distal3.944663.03048HepG2GTF2F1
chr3136470809136470941-intron-Distal3.209968.80096HepG2CSTF2T
chr3136470835136470932-intron-Distal4.767727.17310HepG2XRN2
chr3136470949136471006-intron-Distal3.953043.21001HepG2XRN2
chr3136470898136470990-intron-Distal4.455394.54675K562XRN2
chr3136208600136208652-intron-Distal3.550284.83406HepG2QKI
chr3136470880136470936-intron-Distal4.399084.44312HepG2EFTUD2
chr3136470713136470766-intron-Distal4.846994.33932HepG2XRN2
chr3136225709136225750-intron-Distal4.133843.50357HepG2QKI
chr3136413580136413650-intron-Distal5.314578.20307HepG2QKI
chr3136449097136449162-intron-Distal4.156043.16986HepG2QKI
chr3136470936136471006-intron-Distal4.899087.21143HepG2EFTUD2
chr3136420880136420983-intron-Distal3.050833.23702K562PTBP1
chr3136225416136225492-intron-Distal3.474975.15158HepG2HNRNPC
chr3136449620136449671-intron-Distal3.754575.63625HepG2HNRNPM
chr3136460840136460919-intron-Distal3.466593.62357HepG2U2AF2
chr3136211660136211739-intron-Distal3.616375.61622HepG2QKI
chr3136460737136460829-intron-Distal4.309545.62258K562KHSRP
chr3136232142136232166-intron-Distal3.506755.59048HepG2HNRNPC
chr3136438390136438485-intron-Distal4.513909.36623HepG2PCBP2
chr3136386207136386354-intron-Distal3.034213.02891HepG2HNRNPL
chr3136469744136469823-intron-Distal3.488276.07855HepG2SFPQ
chr3136228308136228398-intron-Distal3.425195.19856HepG2PTBP1
chr3136310104136310211-intron-Distal,intron-Proximal5.4255510.01406HepG2PTBP1
chr3136239493136239557-intron-Distal4.322324.55788HepG2QKI
chr3136414715136414771-intron-Distal3.267586.84099HepG2CSTF2
chr3136369371136369486-intron-Distal4.278596.06017HepG2QKI
chr3136470401136470455-intron-Distal3.217133.48399HepG2CSTF2T
chr3136441428136441534-intron-Distal4.462684.55101HepG2PRPF4
chr3136223697136223764-intron-Distal3.082493.31157HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for STAG1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for STAG1 is not available on ENCORE database.

  • 79 RBPs can affect the levels of STAG1.  








The Knockdown/knockout RNA-Seq assay for STAG1 is not available on ENCORE database.





79 RBPs can affect the gene expression of STAG1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
STAG1ENSG00000118007.81023.54020780.120900.391702.356801.48510HepG2ABCF1
STAG1ENSG00000118007.8644.25940880.15140-0.450103.502402.83790HepG2BOP1
STAG1ENSG00000118007.8601.37470735.82450-0.291102.560001.91570HepG2CKAP4
STAG1ENSG00000118007.8673.77820927.60700-0.461205.339604.49930HepG2CELF1
STAG1ENSG00000118007.8475.53620817.40730-0.781502.057301.38040HepG2DDX55
STAG1ENSG00000118007.8424.15990789.61490-0.896508.260707.24680HepG2DDX6
STAG1ENSG00000118007.8351.92590572.58690-0.702207.855306.71990HepG2DNAJC21
STAG1ENSG00000118007.8389.38510567.46890-0.543306.189805.27110HepG2DNAJC2
STAG1ENSG00000118007.8584.99410759.23130-0.376102.127801.59990HepG2EIF2S1
STAG1ENSG00000118007.8881.76680647.867700.444603.924902.66480HepG2EIF3G
STAG1ENSG00000118007.81111.37200839.114900.405302.593001.97270HepG2EIF4A3
STAG1ENSG00000118007.81473.215101154.608800.351502.946102.32890HepG2ETF1
STAG1ENSG00000118007.8885.00940689.753000.359502.238301.32600HepG2GNB2L1
STAG1ENSG00000118007.8714.34010915.99020-0.358701.990001.44120HepG2GPKOW
STAG1ENSG00000118007.8479.33080702.61940-0.551705.614904.27820HepG2HDGF
STAG1ENSG00000118007.8704.87640916.67120-0.379003.799502.73190HepG2HNRNPA2B1
STAG1ENSG00000118007.8605.09480833.92420-0.462804.945404.02140HepG2HNRNPF
STAG1ENSG00000118007.8699.63600908.63530-0.377104.541603.69530HepG2HNRNPL
STAG1ENSG00000118007.8524.19690638.72800-0.285102.115201.57710HepG2HNRNPU
STAG1ENSG00000118007.8453.99020652.44300-0.523206.798605.70060HepG2ILF2
STAG1ENSG00000118007.8481.23110672.75260-0.483305.644404.20250HepG2KIF1C
STAG1ENSG00000118007.81178.81390846.698900.477303.743202.97980HepG2MAGOH
STAG1ENSG00000118007.8635.49070851.47480-0.422102.427401.83370HepG2MATR3
STAG1ENSG00000118007.8787.37380989.08330-0.329002.931502.14640HepG2NOL12
STAG1ENSG00000118007.8302.06190415.46510-0.459902.916601.65180HepG2PKM
STAG1ENSG00000118007.8452.12270569.69790-0.333502.338101.65500HepG2PPIL4
STAG1ENSG00000118007.8654.90840858.40990-0.390403.369402.68950HepG2QKI
STAG1ENSG00000118007.8643.67820853.21230-0.406603.551102.59110HepG2RBM15
STAG1ENSG00000118007.8377.24220488.86740-0.374002.155001.60610HepG2RPS19
STAG1ENSG00000118007.8375.21420568.82760-0.600306.739405.80030HepG2SAFB2
STAG1ENSG00000118007.8566.43660765.93160-0.435302.285401.42460HepG2SMNDC1
STAG1ENSG00000118007.8685.62940962.72930-0.489702.455101.71980HepG2SNRNP70
STAG1ENSG00000118007.81165.09170861.338300.435705.604704.99090HepG2SRSF1
STAG1ENSG00000118007.81349.60010930.970100.535603.861202.65690HepG2SRSF3
STAG1ENSG00000118007.8636.14530819.28150-0.365003.242802.49580HepG2SRSF7
STAG1ENSG00000118007.8587.85540700.74760-0.253401.906401.43220HepG2SRSF9
STAG1ENSG00000118007.81611.87630946.499500.7680014.6548013.66250HepG2SSB
STAG1ENSG00000118007.8570.21080711.38700-0.319102.138001.40170HepG2TIA1
STAG1ENSG00000118007.8388.58310626.18670-0.688409.133708.20110HepG2TRIM56
STAG1ENSG00000118007.8508.32120983.06110-0.951502.814901.81630HepG2U2AF2
STAG1ENSG00000118007.8657.18720976.28270-0.571004.338103.27600HepG2UBE2L3
STAG1ENSG00000118007.8275.54650480.85670-0.803302.326501.62910HepG2UCHL5
STAG1ENSG00000118007.8706.92670845.21070-0.257802.191601.55830HepG2UPF1
STAG1ENSG00000118007.8831.83240524.183000.6661010.639009.46310HepG2ZC3H8
STAG1ENSG00000118007.8728.57460929.56910-0.351504.190803.55580HepG2ZNF622
STAG1ENSG00000118007.8210.71110302.15190-0.520002.993402.40650K562AGGF1
STAG1ENSG00000118007.8195.56380314.39740-0.684904.266503.45150K562AKAP8L
STAG1ENSG00000118007.81031.01370670.989400.619602.780101.53790K562APOBEC3C
STAG1ENSG00000118007.81002.71920625.105000.681605.890205.09000K562AQR
STAG1ENSG00000118007.8224.28520329.86830-0.556603.631002.57270K562ATP5C1
STAG1ENSG00000118007.81259.68160586.823501.1020030.2773028.35030K562DDX47
STAG1ENSG00000118007.8243.76340338.34800-0.473002.932802.02770K562DKC1
STAG1ENSG00000118007.8276.78530134.127501.045104.427003.12710K562EIF3A
STAG1ENSG00000118007.8773.61470403.985700.937209.386507.32980K562EIF3D
STAG1ENSG00000118007.8600.03850336.825100.8330010.256108.71770K562EIF3G
STAG1ENSG00000118007.8421.02900243.546600.789606.574205.31680K562EIF4A3
STAG1ENSG00000118007.81203.37720760.349500.662305.749604.41690K562EIF4G2
STAG1ENSG00000118007.8424.32430573.44870-0.434502.808101.95260K562FIP1L1
STAG1ENSG00000118007.8674.16440253.278101.4123027.3808025.60680K562FXR1
STAG1ENSG00000118007.8559.34330438.214200.352002.453701.61160K562HNRNPU
STAG1ENSG00000118007.8220.18090332.86240-0.596202.844601.80170K562IGF2BP2
STAG1ENSG00000118007.8243.47600333.67320-0.454702.401401.64110K562KIF1C
STAG1ENSG00000118007.8209.40840304.03870-0.537902.794001.39850K562LARP7
STAG1ENSG00000118007.8547.47190349.999900.645303.553802.59510K562MAGOH
STAG1ENSG00000118007.8576.31470411.712400.485104.621803.59830K562MTPAP
STAG1ENSG00000118007.8153.37340262.00200-0.772503.380302.38620K562NAA15
STAG1ENSG00000118007.8252.63420371.52780-0.556402.869801.54470K562NONO
STAG1ENSG00000118007.8186.75060309.17630-0.727303.898502.08700K562NUSAP1
STAG1ENSG00000118007.8556.88880387.042900.524803.165202.27490K562PCBP3
STAG1ENSG00000118007.8291.62510433.61340-0.572303.623801.81060K562PKM
STAG1ENSG00000118007.8451.03240296.886000.603204.782303.72860K562POLR2G
STAG1ENSG00000118007.8418.83370650.97740-0.636205.507104.28560K562PPIG
STAG1ENSG00000118007.8510.68630367.098600.476202.852402.09280K562PRPF8
STAG1ENSG00000118007.8172.90760281.57890-0.703503.704602.63700K562PSIP1
STAG1ENSG00000118007.8520.68280340.033700.614605.525504.61430K562PTBP1
STAG1ENSG00000118007.81763.43210829.660801.0877018.9265016.72790K562PUF60
STAG1ENSG00000118007.8177.70740303.80380-0.773605.406904.60320K562RBM15
STAG1ENSG00000118007.8143.21480256.86500-0.842805.070203.72450K562RCC2
STAG1ENSG00000118007.8516.13910373.984300.464702.551601.76780K562RPS19
STAG1ENSG00000118007.8269.43650164.698900.710003.250602.15630K562RPS3
STAG1ENSG00000118007.8372.62240264.498400.494402.789501.70240K562SAFB
STAG1ENSG00000118007.8107.36420282.86850-1.397603.373802.00810K562SF1
STAG1ENSG00000118007.8200.19740333.32680-0.735504.952404.00920K562SRSF1
STAG1ENSG00000118007.8183.33560314.75360-0.779705.362503.81370K562SRSF5
STAG1ENSG00000118007.8349.74460514.89150-0.558004.970403.38630K562SRSF7
STAG1ENSG00000118007.8245.36720347.44510-0.501802.917401.59730K562SSB
STAG1ENSG00000118007.8609.97900297.769301.0345014.2028012.34830K562SYNCRIP
STAG1ENSG00000118007.8236.44420325.44040-0.460902.416001.65700K562TIA1
STAG1ENSG00000118007.8213.62640319.25380-0.579602.324201.34120K562TRA2A
STAG1ENSG00000118007.8152.57780287.68500-0.914905.785204.30380K562TRIM56
STAG1ENSG00000118007.8293.41800420.03630-0.517603.604901.68900K562UPF2
STAG1ENSG00000118007.8762.51420431.586100.8210014.6018012.85780K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for STAG1 is not available on ENCORE database.





5 RBPs can affect the splicing of STAG1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESTAG1ENSG00000118007.8chr3-1362370891362372571362214691362216211362400541362402590.297000.000000.00000includedHepG2U2AF1
SESTAG1ENSG00000118007.8chr3-1362370891362372571362214691362216211362400541362402590.123000.000000.00003includedHepG2U2AF2
SESTAG1ENSG00000118007.8chr3-136087949136088124136085784136085924136096501136096594-0.194000.008840.07356excludedK562AQR
SESTAG1ENSG00000118007.8chr3-136341987136342090136323150136323315136349711136349823-0.235000.004980.04643excludedK562AQR
SESTAG1ENSG00000118007.8chr3-136287606136287703136260960136261037136323150136323315-0.359000.000690.01898excludedHepG2SRSF1
SESTAG1ENSG00000118007.8chr3-1362370891362372571362214691362216211362400541362402590.297000.000670.01372includedK562HNRNPC
A3SSSTAG1ENSG00000118007.8chr3-1361367261361368451361367261361368141361399341361400850.266000.000330.00254longerK562AQR
A3SSSTAG1ENSG00000118007.8chr3-1360765611360767471360765611360766901360779891360781380.258000.000260.00207longerK562AQR
A3SSSTAG1ENSG00000118007.8chr3-1360602821360604061360602821360603931360626731360628480.354000.000040.00041longerK562AQR
A3SSSTAG1ENSG00000118007.8chr3-1360572111360573961360572111360572921360593321360594470.095000.002780.01724longerK562AQR
MXESTAG1ENSG00000118007.8chr3-1360779891360781381360822071360823861360765611360766901360857841360859240.191000.009610.061311includedK562AQR
MXESTAG1ENSG00000118007.8chr3-1360779891360781381360822071360823461360765611360766901360857841360859240.191000.009610.061311includedK562AQR
MXESTAG1ENSG00000118007.8chr3-1360593321360594471360602821360604061360572111360572921360626731360628480.224000.001330.011721includedK562AQR
MXESTAG1ENSG00000118007.8chr3-1360822071360823091360857841360859241360779891360781381360965011360965940.275000.003760.028301includedK562AQR
MXESTAG1ENSG00000118007.8chr3-1361175901361176711361367261361368451360965011360965941361399341361400050.215000.002730.021641includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for STAG1 is not avaliable on ENCORE database.