SNX3

General Information

Gene Name       : SNX3
Gene ID             : ENSG00000112335.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX3ENSG00000112335.14101.90103.32102.61ENCSR000AEF
HepG2SNX3ENSG00000112335.1466.29117.5191.90ENCSR985KAT
K562SNX3ENSG00000112335.14150.29175.56162.93ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX3 RNA is bound by 14 proteins.  







eCLIP assay for SNX3 is not avaliable on ENCORE database.





14 proteins are bound to SNX3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6108532992108533095-3'-UTR,intron-Distal4.7029827.91945HepG2SUB1
chr6108532889108532948-3'-UTR,intron-Distal3.3344142.59127K562FAM120A
chr6108533302108533362-3'-UTR,CDS,intron-Distal3.5172213.27237K562FAM120A
chr6108532883108532980-3'-UTR,intron-Distal3.3742613.36268K562TIA1
chr6108532638108532710-3'-UTR,intron-Distal,intron-Proximal3.841743.30829HepG2CSTF2
chr6108532894108533003-3'-UTR,intron-Distal3.149027.41510HepG2DDX55
chr6108533167108533249-3'-UTR,intron-Distal,intron-Proximal3.342906.51588K562IGF2BP2
chr6108533095108533112-3'-UTR,intron-Distal,intron-Proximal4.1517418.89514K562IGF2BP1
chr6108533061108533095-3'-UTR,intron-Distal4.5331322.74352K562IGF2BP1
chr6108533112108533170-3'-UTR,intron-Distal,intron-Proximal3.5287817.43672K562IGF2BP1
chr6108532835108532878-3'-UTR,intron-Distal3.7992018.29871K562YBX3
chr6108532879108532985-3'-UTR,intron-Distal3.128763.50315HepG2UPF1
chr6108532780108532864-3'-UTR,intron-Distal4.3304940.57876K562PUM2
chr6108533186108533243-3'-UTR,intron-Distal,intron-Proximal3.141537.07888K562IGF2BP1
chr6108532878108532898-3'-UTR,intron-Distal3.2505711.43661K562YBX3
chr6108532948108532981-3'-UTR,intron-Distal3.2295026.62193K562FAM120A
chr6108532912108533016-3'-UTR,intron-Distal4.459685.69035HepG2TIAL1
chr6108532819108532835-3'-UTR,intron-Distal3.628437.59425K562YBX3
chr6108582078108582245-5'-UTR,CDS,intron-Distal,intron-Proximal3.6417319.03867K562DDX3X
chr6108582117108582240-5'-UTR,CDS,intron-Distal,intron-Proximal4.3600530.25095HepG2DDX3X
chr6108582035108582041-CDS,intron-Distal3.1611210.57840K562YBX3
chr6108582049108582054-CDS,intron-Distal4.0488528.71865K562YBX3
chr6108581986108582035-CDS,intron-Distal3.3013111.58680K562YBX3
chr6108582054108582076-CDS,intron-Distal3.8707329.89211K562YBX3
chr6108581907108582019-CDS,intron-Distal5.1209410.09745HepG2PRPF8
chr6108582076108582091-CDS,intron-Distal3.9247922.13377K562YBX3
chr6108535341108535594-intron-Distal3.381267.21887K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX3 is not available on ENCORE database.

  • 86 RBPs can affect the levels of SNX3.  








The Knockdown/knockout RNA-Seq assay for SNX3 is not available on ENCORE database.





86 RBPs can affect the gene expression of SNX3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX3ENSG00000112335.101951.009001451.126900.426908.181207.24930HepG2ACO1
SNX3ENSG00000112335.101703.650401458.070000.224502.308001.60050HepG2AKAP8L
SNX3ENSG00000112335.102372.854001989.361200.254203.253702.51860HepG2AUH
SNX3ENSG00000112335.103275.814002593.028700.337104.084203.17080HepG2CALR
SNX3ENSG00000112335.102702.112703481.77660-0.365702.263901.39060HepG2CCAR1
SNX3ENSG00000112335.102242.463001909.285400.232002.368601.76630HepG2CELF1
SNX3ENSG00000112335.101819.850402053.12280-0.174002.235701.55880HepG2DAZAP1
SNX3ENSG00000112335.101529.843501249.768000.291602.104201.50360HepG2DDX21
SNX3ENSG00000112335.101041.985701573.35030-0.5945010.475309.17880HepG2DNAJC21
SNX3ENSG00000112335.101379.757401559.49110-0.176701.888001.33100HepG2DNAJC2
SNX3ENSG00000112335.101629.724402099.65480-0.365502.736402.14680HepG2EIF2S1
SNX3ENSG00000112335.101611.586801278.709100.333702.166101.35700HepG2EIF3D
SNX3ENSG00000112335.101824.386402320.43520-0.347002.203001.62990HepG2EIF4A3
SNX3ENSG00000112335.101153.860402703.93830-1.228607.848306.14630HepG2FTO
SNX3ENSG00000112335.101223.437001640.94460-0.423604.261703.29780HepG2FUBP3
SNX3ENSG00000112335.101645.278802171.74170-0.400502.972902.28440HepG2G3BP1
SNX3ENSG00000112335.101800.122502305.43700-0.356902.797101.90090HepG2G3BP2
SNX3ENSG00000112335.10725.612901588.42380-1.1303023.3744021.81710HepG2HNRNPA1
SNX3ENSG00000112335.102227.625201886.795600.239502.668001.74810HepG2HNRNPA2B1
SNX3ENSG00000112335.101758.417002064.20110-0.231302.498601.81620HepG2HNRNPF
SNX3ENSG00000112335.101561.200202198.82580-0.494105.264204.32370HepG2HNRNPK
SNX3ENSG00000112335.101300.303801817.96000-0.483505.910904.58420HepG2HNRNPM
SNX3ENSG00000112335.101320.288602207.56750-0.741609.625708.45240HepG2IGF2BP2
SNX3ENSG00000112335.101437.926801792.83280-0.318305.332404.34090HepG2ILF2
SNX3ENSG00000112335.101686.911302220.36180-0.396402.457201.52310HepG2KHSRP
SNX3ENSG00000112335.101794.502702341.82690-0.384102.936902.26200HepG2MAGOH
SNX3ENSG00000112335.102147.329002978.10630-0.471903.054202.03290HepG2MTPAP
SNX3ENSG00000112335.101840.131702410.46880-0.389502.915002.26650HepG2NCBP2
SNX3ENSG00000112335.101713.962902035.86310-0.248302.491401.77030HepG2NOL12
SNX3ENSG00000112335.101576.435902146.80800-0.445503.734302.90390HepG2PABPC4
SNX3ENSG00000112335.101442.601802291.25160-0.667509.966808.92910HepG2PCBP1
SNX3ENSG00000112335.101924.192201553.586200.308604.063503.14520HepG2PRPF4
SNX3ENSG00000112335.101343.360901044.374900.363102.582401.80140HepG2PRPF8
SNX3ENSG00000112335.101496.049802331.29440-0.640008.711807.85190HepG2PTBP1
SNX3ENSG00000112335.101379.097002525.14730-0.8726013.0014011.79240HepG2QKI
SNX3ENSG00000112335.102649.426901909.054100.472708.242207.45830HepG2RBM22
SNX3ENSG00000112335.101845.462302291.62090-0.312403.070502.36420HepG2RBM25
SNX3ENSG00000112335.101872.092302594.62300-0.470906.075105.32540HepG2NELFE
SNX3ENSG00000112335.101563.169002416.32810-0.628309.832808.77870HepG2RECQL
SNX3ENSG00000112335.101033.776901244.26600-0.267401.859501.34600HepG2RPS19
SNX3ENSG00000112335.101169.404001633.85240-0.482503.117402.26990HepG2RPS3A
SNX3ENSG00000112335.101372.033401563.03820-0.188001.874101.32680HepG2SAFB2
SNX3ENSG00000112335.103360.920302046.648800.715506.937005.83600HepG2SF3A3
SNX3ENSG00000112335.101779.522802427.42900-0.447904.879504.12900HepG2SF3B4
SNX3ENSG00000112335.101654.429101863.26580-0.171501.955101.34640HepG2SLBP
SNX3ENSG00000112335.101540.987101822.75540-0.242303.359202.66150HepG2SMN1
SNX3ENSG00000112335.102764.119902156.201300.358206.837406.14740HepG2SRFBP1
SNX3ENSG00000112335.101665.530001918.71940-0.204202.238201.66810HepG2SRSF5
SNX3ENSG00000112335.101759.793202027.98360-0.204602.077901.46530HepG2SRSF7
SNX3ENSG00000112335.101694.394802061.13700-0.282702.172201.67110HepG2SRSF9
SNX3ENSG00000112335.101829.849002277.02190-0.315403.541602.92090HepG2TAF15
SNX3ENSG00000112335.102017.068802846.15860-0.496805.846104.84950HepG2TARDBP
SNX3ENSG00000112335.101670.130002092.57410-0.325303.289902.38300HepG2TIA1
SNX3ENSG00000112335.101197.126801705.42040-0.510607.183106.44640HepG2TIAL1
SNX3ENSG00000112335.101515.590401720.71130-0.183101.792501.31860HepG2TRIM56
SNX3ENSG00000112335.103657.845202253.997800.698408.401707.30640HepG2U2AF1
SNX3ENSG00000112335.101107.71460796.110800.476403.918603.01600HepG2UCHL5
SNX3ENSG00000112335.102127.728801752.373100.279903.886603.19490HepG2UTP3
SNX3ENSG00000112335.103280.588301996.223300.7166010.798309.89410HepG2ZNF622
SNX3ENSG00000112335.104348.344503602.949800.271204.522403.82890K562AGGF1
SNX3ENSG00000112335.105585.162603959.030900.496404.619103.27170K562AKAP8
SNX3ENSG00000112335.105959.919403749.016300.668705.531104.59120K562AKAP8L
SNX3ENSG00000112335.104765.130903889.059600.293002.308801.76570K562AQR
SNX3ENSG00000112335.105132.561904305.775600.253302.747101.57690K562CCDC124
SNX3ENSG00000112335.105591.838504227.245100.403504.284702.44000K562DDX19B
SNX3ENSG00000112335.105016.427804034.312300.314204.698003.50810K562DKC1
SNX3ENSG00000112335.101750.414202180.87660-0.317202.729301.91380K562EIF4A3
SNX3ENSG00000112335.103654.373502735.239100.417903.757102.41450K562FKBP4
SNX3ENSG00000112335.102511.858004553.39890-0.8582014.2943012.07740K562FTO
SNX3ENSG00000112335.103546.075102391.712600.568102.261801.63060K562G3BP2
SNX3ENSG00000112335.101298.365301751.91600-0.432203.522201.88430K562GEMIN5
SNX3ENSG00000112335.101401.649302739.82280-0.9670023.7942021.17800K562HNRNPA1
SNX3ENSG00000112335.102295.272102813.20300-0.293502.659901.54380K562HNRNPF
SNX3ENSG00000112335.108020.941106199.924800.371402.296801.56720K562HSPD1
SNX3ENSG00000112335.105842.360703978.700400.554208.878807.18010K562KIF1C
SNX3ENSG00000112335.102051.592002809.17050-0.453405.811403.50030K562LSM11
SNX3ENSG00000112335.105468.211803808.549000.521704.304802.87690K562MAK16
SNX3ENSG00000112335.105806.222604457.141500.381402.243801.43940K562MBNL1
SNX3ENSG00000112335.104078.358504920.64100-0.270902.611901.76440K562METAP2
SNX3ENSG00000112335.102911.881403413.20120-0.229202.919802.08860K562MTPAP
SNX3ENSG00000112335.105141.696703124.128300.718707.550805.81470K562NAA15
SNX3ENSG00000112335.101880.084002264.07020-0.268102.161701.30140K562PCBP2
SNX3ENSG00000112335.102196.786001700.451500.369403.185702.38050K562PRPF8
SNX3ENSG00000112335.101966.696402824.49070-0.522206.851005.31520K562PSIP1
SNX3ENSG00000112335.108610.141403718.112401.2114016.7316015.43640K562PUS1
SNX3ENSG00000112335.101321.914302281.72160-0.787506.238504.02530K562RAVER1
SNX3ENSG00000112335.106320.967103622.643500.8030025.8993024.01100K562RBM15
SNX3ENSG00000112335.102169.741902674.82950-0.301902.202601.31880K562RPS3
SNX3ENSG00000112335.102598.032601738.645300.579404.677702.94210K562RRP9
SNX3ENSG00000112335.101944.636202582.10400-0.409004.861503.40510K562SRSF4
SNX3ENSG00000112335.102112.133401751.510600.270003.041301.68910K562SSB
SNX3ENSG00000112335.101488.166402452.74690-0.7209010.352608.84440K562TARDBP
SNX3ENSG00000112335.104695.265903971.596000.241403.584302.12950K562TROVE2
SNX3ENSG00000112335.102893.182902393.406200.273502.753501.95160K562U2AF2
SNX3ENSG00000112335.102713.737003440.98810-0.342503.936702.88650K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX3 is not available on ENCORE database.





1 RBPs can affect the splicing of SNX3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX3ENSG00000112335.10chr6-108535701108535849108532425108533458108544153108544294-0.083000.000000.00000excludedK562AQR
A3SSSNX3ENSG00000112335.10chr6-1085441531085442941085441531085442491085819631085824640.065000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX3 is not avaliable on ENCORE database.