SNX29

General Information

Gene Name       : SNX29
Gene ID             : ENSG00000048471.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX29)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX29ENSG00000048471.1313.2516.6314.94ENCSR000AEF
HepG2SNX29ENSG00000048471.132.843.022.93ENCSR985KAT
K562SNX29ENSG00000048471.133.453.223.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX29 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX29 RNA is bound by 21 proteins.  







eCLIP assay for SNX29 is not avaliable on ENCORE database.





21 proteins are bound to SNX29 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr161213676312136865+3'-UTR,CDS3.128154.03389K562ZNF622
chr161266454012664578+3'-UTR3.947413.20319K562UPF1
chr161266302112663054+3'-UTR4.121373.31330K562UPF1
chr161214596712146081+5'-UTR,CDS,intron-Proximal5.490505.34688K562DDX24
chr161214600312146076+5'-UTR,CDS3.471834.22563K562UCHL5
chr161214597712146080+5'-UTR,CDS,intron-Proximal3.749528.32162K562ZNF622
chr161214600112146080+5'-UTR,CDS,intron-Proximal3.562484.77136HepG2PPIG
chr161222052512220554+CDS,intron-Proximal3.236224.74755K562ZNF622
chr161212117312121207+CDS,intron-Proximal4.515934.50440HepG2PPIG
chr161217268912172776+CDS,intron-Proximal3.679136.25299K562ZNF622
chr161214586812145944+CDS3.942174.20387K562ZNF622
chr161209317912093216+CDS,intron-Proximal4.398694.38106HepG2PPIG
chr161217268912172776+CDS,intron-Proximal3.960776.39364HepG2PPIG
chr161222348612223552+CDS,intron-Proximal3.463304.40383K562UCHL5
chr161212117612121302+CDS,intron-Proximal3.865745.21950K562DDX24
chr161237179212371921+CDS,intron-Proximal3.018176.80995K562ZNF622
chr161212119612121302+CDS,intron-Proximal4.603135.10960K562ZNF622
chr161214025512140311+CDS5.239255.34688K562DDX24
chr161222048812220554+CDS,intron-Proximal4.437704.38106HepG2PPIG
chr161222348412223590+CDS,intron-Proximal3.412125.74131HepG2PPIG
chr161209684512096902+CDS,intron-Proximal4.354968.09084HepG2PPIG
chr161212120712121276+CDS3.517934.13746HepG2PPIG
chr161214570312145802+CDS,intron-Proximal3.548264.49347K562UCHL5
chr161222348612223563+CDS,intron-Proximal3.766927.65528K562ZNF622
chr161245003412450136+CDS3.628153.90826K562ZNF622
chr161212117612121289+CDS,intron-Proximal3.842093.34184HepG2GRWD1
chr161214026212140311+CDS4.398694.67689HepG2PPIG
chr161229692212296994+intron-Distal4.262507.01277K562EXOSC5
chr161229903812299084+intron-Distal3.422063.72904K562EXOSC5
chr161229620112296249+intron-Distal5.296157.38793K562EXOSC5
chr161229715112297247+intron-Distal4.9196414.69713HepG2HNRNPM
chr161230458312304690+intron-Distal4.446448.02555HepG2PCBP2
chr161229700412297054+intron-Distal3.942065.28337HepG2HNRNPM
chr161251143412511690+intron-Distal5.5820111.82650HepG2PTBP1
chr161247567212475773+intron-Distal3.323754.57171HepG2AGGF1
chr161246511412465219+intron-Distal4.775855.39854K562PTBP1
chr161257533412575433+intron-Distal4.848488.39842K562HNRNPL
chr161229730112297358+intron-Distal6.3620321.93157K562HNRNPM
chr161230018112300229+intron-Distal4.138543.01445K562EXOSC5
chr161229791212297955+intron-Distal4.868256.41216K562EXOSC5
chr161229703712297080+intron-Distal5.186978.36716K562EXOSC5
chr161229700012297060+intron-Distal6.0307631.26863K562HNRNPM
chr161257530912575438+intron-Distal5.922468.88633HepG2HNRNPL
chr161229725212297301+intron-Distal5.8740416.32904K562HNRNPM
chr161235491412355014+intron-Distal3.998713.49390K562DROSHA
chr161235454112354601+intron-Distal4.297793.93366K562RBFOX2
chr161235464112354785+intron-Distal3.948517.29501HepG2RBFOX2
chr161224300712243090+intron-Distal4.030843.27946HepG2HNRNPM
chr161229730112297357+intron-Distal4.132617.68916HepG2HNRNPM
chr161235576612355802+intron-Distal4.525693.72755K562EIF4G2
chr161235466412354818+intron-Distal5.4631610.85200K562RBFOX2
chr161229646012296519+intron-Distal4.332787.61465K562EXOSC5
chr161235496312355024+intron-Distal6.141027.46810K562AATF
chr161235470312354809+intron-Distal6.5162816.64634K562EIF4G2
chr161235507812355161+intron-Distal6.5809620.92297K562EIF4G2
chr161226419312264244+intron-Distal4.009484.44706K562EIF4G2
chr161251153912511652+intron-Distal5.544377.41017K562PTBP1
chr161235591812355997+intron-Distal3.229323.51708K562RBFOX2
chr161229680812296880+intron-Distal5.5757710.01029K562EXOSC5
chr161222991312229976+intron-Distal4.652723.22788K562XRCC6
chr161233306512333200+intron-Distal4.673183.29197K562HNRNPM
chr161222458012224624+intron-Distal3.648563.30744K562PTBP1
chr161235489112354957+intron-Distal4.673605.74090K562RBFOX2
chr161229682512296884+intron-Distal5.7242026.21446K562HNRNPM
chr161247527112475348+intron-Distal6.7431620.34004K562AGGF1
chr161229624912296312+intron-Distal5.133517.71416K562EXOSC5
chr161235491112355018+intron-Distal4.379234.92524K562TARDBP
chr161235453412354625+intron-Distal6.5405620.09939K562EIF4G2
chr161229667012296707+intron-Distal4.432878.56038K562HNRNPM
chr161246056212460691+intron-Distal3.846533.30744K562PTBP1
chr161260729412607356+intron-Distal4.667965.77028HepG2PCBP2
chr161246064612460761+intron-Distal4.472104.74221HepG2PTBP1
chr161235546612355524+intron-Distal4.917096.34754HepG2RBFOX2
chr161229746012297504+intron-Distal5.167188.69493K562EXOSC5
chr161229735712297407+intron-Distal4.970637.51037HepG2HNRNPM
chr161229718012297208+intron-Distal5.8082328.10901K562HNRNPM
chr161229706012297101+intron-Distal6.1173314.77383K562HNRNPM
chr161235497212355030+intron-Distal4.064043.71802K562RBFOX2
chr161226459512264706+intron-Distal4.622396.05696K562IGF2BP1
chr161229745212297525+intron-Distal5.6158011.13888HepG2HNRNPM
chr161226413412264167+intron-Distal4.670444.67055K562EIF4G2
chr161229746412297486+intron-Distal6.3556821.93157K562HNRNPM
chr161235547112355519+intron-Distal4.064043.71802K562RBFOX2
chr161247565712475755+intron-Distal7.0957933.90155K562AGGF1
chr161229748612297528+intron-Distal5.7165424.67123K562HNRNPM
chr161235494512355005+intron-Distal5.3051416.29438K562EIF4G2
chr161229720812297243+intron-Distal5.6415624.92900K562HNRNPM
chr161253108212531162+intron-Distal4.130663.74583HepG2PTBP1
chr161253108212531176+intron-Distal4.701423.42734K562PTBP1
chr161229738112297395+intron-Distal4.014993.30696K562EXOSC5
chr161232878412328941+intron-Distal4.497816.11515K562PTBP1
chr161235467112354782+intron-Distal4.289353.34609K562TARDBP
chr161235547012355525+intron-Distal6.0950513.45380K562EIF4G2
chr161229683512296956+intron-Distal3.798303.23492HepG2BCCIP
chr161247377412473831+intron-Distal4.679343.86413K562AGGF1
chr161235487112354962+intron-Distal5.348596.62122HepG2RBFOX2
chr161235599712356070+intron-Distal3.344983.51708K562RBFOX2
chr161229736112297412+intron-Distal6.2731521.37639K562HNRNPM
chr161235487512354930+intron-Distal6.382038.94290K562AATF
chr161235591912356027+intron-Distal6.411317.46810K562AATF
chr161229696012297000+intron-Distal6.2713820.06532K562HNRNPM
chr161235481812354945+intron-Distal6.0852826.98721K562EIF4G2
chr161229688412296959+intron-Distal7.0625537.17224K562HNRNPM
chr161226469712264776+intron-Distal6.1962115.35514K562EIF4G2
chr161235598412356047+intron-Distal5.5672210.00047K562EIF4G2
chr161229693612297004+intron-Distal4.871636.08412HepG2HNRNPM
chr161235484412354996+intron-Distal4.050503.83024HepG2IGF2BP1
chr161229706212297096+intron-Distal4.627165.16513HepG2HNRNPM
chr161229708812297155+intron-Distal5.8944913.65583K562EXOSC5
chr161257615012576203+intron-Distal4.481065.41368HepG2PTBP1
chr161235467812354751+intron-Distal5.351527.10995K562AATF
chr161251156212511657+intron-Distal4.076483.27829HepG2MATR3
chr161229715512297260+intron-Distal4.7845015.17605K562EXOSC5
chr161229712512297180+intron-Distal6.6143625.91822K562HNRNPM
chr161235591512355964+intron-Distal4.413167.22570K562EIF4G2
chr161229682212296868+intron-Distal3.593614.38996HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX29 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX29 is not available on ENCORE database.

  • 94 RBPs can affect the levels of SNX29.  








The Knockdown/knockout RNA-Seq assay for SNX29 is not available on ENCORE database.





94 RBPs can affect the gene expression of SNX29 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX29ENSG00000048471.9591.55440400.606400.562203.569202.50580HepG2ABCF1
SNX29ENSG00000048471.9696.86830447.804000.637904.059803.43290HepG2AKAP1
SNX29ENSG00000048471.9607.68390471.155000.367002.941702.23700HepG2AUH
SNX29ENSG00000048471.9177.81210303.69340-0.772303.538502.48100HepG2BCCIP
SNX29ENSG00000048471.9368.65640193.014300.933505.035103.99840HepG2CNOT7
SNX29ENSG00000048471.9219.50000356.08100-0.698003.031202.31630HepG2CPSF6
SNX29ENSG00000048471.9440.10700329.262800.418502.968802.30690HepG2CELF1
SNX29ENSG00000048471.9363.42250283.449200.358502.286601.52350HepG2DDX19B
SNX29ENSG00000048471.9535.53280298.582100.842706.333605.22090HepG2DDX55
SNX29ENSG00000048471.9216.64790368.50400-0.766304.395803.63130HepG2DDX6
SNX29ENSG00000048471.9388.84350293.220200.407102.428201.78690HepG2DKC1
SNX29ENSG00000048471.9409.08110234.002600.805805.150003.92720HepG2EEF2
SNX29ENSG00000048471.9275.18930189.927300.534902.125401.32450HepG2EIF3D
SNX29ENSG00000048471.9891.95700540.984500.7213010.677309.62130HepG2ETF1
SNX29ENSG00000048471.9390.58750299.479700.383102.034201.32020HepG2EWSR1
SNX29ENSG00000048471.9553.80220404.540500.453002.508401.77140HepG2FIP1L1
SNX29ENSG00000048471.9237.58610366.39440-0.624903.478802.73660HepG2G3BP1
SNX29ENSG00000048471.9357.33590169.096701.079308.933807.36750HepG2GEMIN5
SNX29ENSG00000048471.9764.51190403.686500.921208.625007.53760HepG2GPKOW
SNX29ENSG00000048471.9351.14770247.814800.502701.868301.32560HepG2HNRNPA1
SNX29ENSG00000048471.9192.78090275.65410-0.515902.214601.58720HepG2HNRNPC
SNX29ENSG00000048471.9364.63590273.831200.413101.912601.39980HepG2HNRNPU
SNX29ENSG00000048471.9480.68470371.257200.372602.278801.61910HepG2IGF2BP1
SNX29ENSG00000048471.9726.63830372.424900.9642010.506809.28050HepG2IGF2BP2
SNX29ENSG00000048471.9631.69690395.131400.676805.154904.26700HepG2MAGOH
SNX29ENSG00000048471.9229.14990362.16220-0.660303.899403.05350HepG2PABPC4
SNX29ENSG00000048471.9583.72570350.905100.734109.022608.02900HepG2PCBP1
SNX29ENSG00000048471.9199.62110315.55800-0.660603.077001.98430HepG2PCBP2
SNX29ENSG00000048471.9534.96850370.169900.531204.808703.82040HepG2PRPF4
SNX29ENSG00000048471.9672.65580335.103701.0052013.1800012.00820HepG2PUF60
SNX29ENSG00000048471.9488.83360355.736500.458404.187703.49030HepG2PUM1
SNX29ENSG00000048471.9539.20380312.173400.7884010.184209.12880HepG2PUS1
SNX29ENSG00000048471.9520.96260386.704100.429802.886602.25160HepG2QKI
SNX29ENSG00000048471.9656.92380397.372400.725108.535707.68170HepG2NELFE
SNX29ENSG00000048471.9519.20070370.098000.488303.944403.22520HepG2RECQL
SNX29ENSG00000048471.9617.60380406.135400.604604.926704.04930HepG2RPLP0
SNX29ENSG00000048471.9316.72300184.838300.776905.034304.23260HepG2RPS19
SNX29ENSG00000048471.9652.23290388.020900.749209.275908.52370HepG2SRSF1
SNX29ENSG00000048471.9487.48560370.407700.396102.952502.23690HepG2SRSF7
SNX29ENSG00000048471.9271.87120411.25390-0.597103.576202.13250HepG2SSRP1
SNX29ENSG00000048471.9582.29290297.252100.970008.232107.16630HepG2SUPV3L1
SNX29ENSG00000048471.9533.06450375.383000.505803.368202.57740HepG2TARDBP
SNX29ENSG00000048471.9529.84570346.119000.614204.331803.55480HepG2U2AF1
SNX29ENSG00000048471.9741.74120304.565901.284104.393703.13850HepG2U2AF2
SNX29ENSG00000048471.9175.25760272.23990-0.635402.189101.30290HepG2UPF2
SNX29ENSG00000048471.9464.78850365.331200.347302.312401.69120HepG2ZC3H8
SNX29ENSG00000048471.9741.17680480.476200.625308.496707.67350HepG2ZNF622
SNX29ENSG00000048471.9270.31350384.10030-0.506803.739201.96240K562AKAP1
SNX29ENSG00000048471.9538.57720416.098400.372102.051401.53120K562AQR
SNX29ENSG00000048471.9726.38470318.001101.1916015.1407013.05860K562BOP1
SNX29ENSG00000048471.9513.24630335.706700.612304.092202.29910K562BUD13
SNX29ENSG00000048471.9323.51630202.555500.675404.123102.78570K562CCAR1
SNX29ENSG00000048471.9851.38500636.545600.419403.565302.20200K562CCDC124
SNX29ENSG00000048471.9491.82910359.965500.450202.926201.37420K562CEBPZ
SNX29ENSG00000048471.9956.94120597.154400.680205.978503.76820K562CKAP4
SNX29ENSG00000048471.9813.46530477.859100.767404.467803.07360K562CNOT7
SNX29ENSG00000048471.9728.71420510.079700.514505.661904.03100K562CPEB4
SNX29ENSG00000048471.9591.76020338.107900.807408.516707.12380K562CPSF6
SNX29ENSG00000048471.9357.84390213.460500.745303.611201.43440K562DDX1
SNX29ENSG00000048471.9564.29930413.758200.447602.526901.37150K562DDX21
SNX29ENSG00000048471.9511.34410389.194600.393702.544901.54740K562DDX3X
SNX29ENSG00000048471.9345.89980226.765100.609103.576802.03410K562DHX30
SNX29ENSG00000048471.9363.37320217.813900.738305.108203.27150K562DNAJC21
SNX29ENSG00000048471.9568.17930427.500600.410303.347002.00530K562EIF2S1
SNX29ENSG00000048471.9474.45390341.661300.473603.569202.76880K562EIF2S2
SNX29ENSG00000048471.9818.93650634.457300.368103.095102.10460K562EIF4G2
SNX29ENSG00000048471.9597.68250424.587000.493203.947102.39440K562EXOSC5
SNX29ENSG00000048471.9455.49300346.464800.394602.180401.42540K562FIP1L1
SNX29ENSG00000048471.9654.45650344.052500.927609.812808.15500K562FMR1
SNX29ENSG00000048471.9610.58070291.631001.0659011.444109.45430K562FTO
SNX29ENSG00000048471.9287.80510422.86150-0.555104.200503.47770K562FXR1
SNX29ENSG00000048471.9474.29260291.487200.702204.548402.69090K562GEMIN5
SNX29ENSG00000048471.9647.29390322.795101.0037011.9061010.24030K562GPKOW
SNX29ENSG00000048471.9713.55770447.244500.673903.784701.92260K562HNRNPAB
SNX29ENSG00000048471.9570.33750412.833700.466203.429102.06310K562IGF2BP3
SNX29ENSG00000048471.9787.96920436.332000.852605.071003.10570K562ILF2
SNX29ENSG00000048471.9307.93530204.505200.590403.179401.57930K562KHDRBS1
SNX29ENSG00000048471.9768.56460275.665401.4791017.5077015.01050K562KRR1
SNX29ENSG00000048471.9284.63410426.61580-0.583804.344803.28750K562MAGOH
SNX29ENSG00000048471.9521.33420658.91440-0.337902.254901.44740K562MBNL1
SNX29ENSG00000048471.9573.37260315.090300.863608.872907.23400K562METAP2
SNX29ENSG00000048471.9585.95010426.983300.456503.911902.96510K562MTPAP
SNX29ENSG00000048471.9558.68120406.026300.460403.418302.04280K562NCBP2
SNX29ENSG00000048471.9656.54430474.472900.468504.946103.98850K562NSUN2
SNX29ENSG00000048471.9958.84170459.083901.062408.641206.47530K562PABPC1
SNX29ENSG00000048471.9202.02250379.59910-0.910007.197705.59340K562PCBP2
SNX29ENSG00000048471.9999.17300736.320800.440304.443703.06340K562PUM1
SNX29ENSG00000048471.9980.94590721.431700.443204.656803.40100K562PUM2
SNX29ENSG00000048471.9183.54330306.44610-0.739503.063701.56220K562RAVER1
SNX29ENSG00000048471.9250.87930397.48390-0.663904.823303.67640K562RBM22
SNX29ENSG00000048471.9405.68530231.647100.808306.893605.32880K562RCC2
SNX29ENSG00000048471.9665.65440468.100100.507904.926903.86530K562SF3A3
SNX29ENSG00000048471.9583.48790307.043300.926207.954806.25430K562SF3B1
SNX29ENSG00000048471.9317.55710223.086700.509302.620601.39350K562SLBP
SNX29ENSG00000048471.9625.58100354.890700.817704.488601.91090K562SMNDC1
SNX29ENSG00000048471.9512.41370369.280100.472503.614602.26540K562SRSF7
SNX29ENSG00000048471.9631.01020415.708600.602004.497202.82960K562STAU1
SNX29ENSG00000048471.9426.32210273.742600.639002.631901.64140K562SUPV3L1
SNX29ENSG00000048471.9511.52210396.681500.366702.040501.34460K562TIA1
SNX29ENSG00000048471.9752.25630528.831300.508305.670003.82200K562TROVE2
SNX29ENSG00000048471.9439.08120289.812600.599303.466202.31940K562UCHL5
SNX29ENSG00000048471.9960.76460503.089300.9333018.9411017.24860K562UPF1
SNX29ENSG00000048471.9622.50230430.484900.532004.444003.32330K562WDR3
SNX29ENSG00000048471.9703.02370493.192400.511304.470902.81980K562WRN
SNX29ENSG00000048471.9455.95240295.251700.626803.806302.30520K562XRN2
SNX29ENSG00000048471.9899.40360468.654000.9403013.7928011.72270K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX29 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SNX29 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SNX29 is not avaliable on ENCORE database.