SNRPC

General Information

Gene Name : SNRPC
Gene ID : ENSG00000124562.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNRPC)

Not Available

Antibody Validation

Bethyl Labs: A303-947A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNRPC	ENSG00000124562.9	162.77	251.55	207.16	ENCSR000AEF
HepG2	SNRPC	ENSG00000124562.9	348.84	282.92	315.88	ENCSR985KAT
K562	SNRPC	ENSG00000124562.9	654.18	583.65	618.91	ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
eCLIP	eCLIP: 4187	ENCSR959OKB	SNRPC	HepG2	Released	ENCAB311PIH	ENCSR981NWK
eCLIP	eCLIP: 4164	ENCSR714FKK	SNRPC	K562	Released	ENCAB311PIH	ENCSR356XVB
knockdown followed by RNA-seq	SNRPC-BGKcLV23-K562	ENCSR840JRU	SNRPC	K562	Released		ENCSR877JEM	CRISPR	KD% = 68.1,68.7613052
knockdown followed by RNA-seq	SNRPC-BGHcLV22-HepG2	ENCSR005RUR	SNRPC	HepG2	Released		ENCSR704VPL	CRISPR	KD% = 75.6,73.9

eCLIP

RBP	Exp_UID	Cell_Line	ENCODE_ACCESSION	Control_ENCODE_ACCESSION	ENCODE_Antibody_ID	Antibody	Lot_num	Status	Project
SNRPC	4187	HepG2	ENCSR959OKB	ENCSR981NWK	ENCAB311PIH	A303-947A	1	Released	ENCODE4
SNRPC	4164	K562	ENCSR714FKK	ENCSR356XVB	ENCAB311PIH	A303-947A	1	Released	ENCODE4

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SNRPC	ENCAB311PIH	A303-947A	1				BGHcLV22-53, Released, ENCODE4	BGKcLV23-61, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SNRPC	K562	CRISPR			BGKcLV21-45,BGKcLV21-46	BGKcLV21-1,BGKcLV21-2	30.6,28.0	NotSatisfied	ENCODE4
SNRPC	K562	CRISPR	ENCSR840JRU	ENCSR877JEM	SNRPC-BGKcLV23-61,SNRPC-BGKcLV23-62	NT-BGKcLV23-1,NT-BGKcLV23-2	68.1,68.7613052	Released	ENCODE4
SNRPC	HepG2	CRISPR	ENCSR005RUR	ENCSR704VPL	SNRPC-BGHcLV22-53,SNRPC-BGHcLV22-54	NT-BGHcLV22-1,NT-BGHcLV22-2	75.6,73.9	Released	ENCODE4
SNRPC	HepG2	CRISPR			BGHcLV22-55,BGHcLV22-56	BGHcLV22-1,BGHcLV22-2	67.4,76.5	NotSatisfied	ENCODE4
SNRPC	Ribo-STAMP-293T	shRNA			BGRSLV03-47,BGRSLV03-48	BGRSLV03-1,BGRSLV03-2		NotSatisfied	ENCORE2
SNRPC	Ribo-STAMP-293T	shRNA			BGRSLV04-55,BGRSLV04-56	BGRSLV04-1,BGRSLV04-2		NotSatisfied	ENCORE2
SNRPC	Ribo-STAMP-293T	shRNA			BGRSLV09-43,BGRSLV09-44	BGRSLV09-1,BGRSLV09-2		NotSatisfied	ENCORE2
SNRPC	Ribo-STAMP-293T	shRNA			BGRSLV09-45,BGRSLV09-46	BGRSLV09-1,BGRSLV09-2		NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SNRPC	Product_ID: A303-947A Lot_ID: 1 Source: Bethyl Labs Target Name: SNRPC-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNRPC is not avaliable on ENCORE database.

Proteins bound to RNA

SNRPC RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for SNRPC is not avaliable on ENCORE database.

19 proteins are bound to SNRPC RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	34738066	34738115	+	CDS,intron-Proximal	4.95194	42.69964	K562	RPS3
chr6	34741427	34741478	+	3'-UTR	3.68449	39.18724	K562	PABPC4
chr6	34735702	34735746	+	CDS	3.30768	38.48385	K562	YBX3
chr6	34741376	34741473	+	3'-UTR	5.55987	38.23527	HepG2	SUB1
chr6	34741274	34741335	+	CDS	4.25862	29.66390	K562	RPS3
chr6	34725690	34725732	+	CDS,intron-Distal,intron-Proximal	3.68941	29.31166	K562	DDX3X
chr6	34725334	34725386	+	5'-UTR,intron-Proximal	5.54985	28.30163	K562	AQR
chr6	34735746	34735774	+	CDS	3.21412	23.40612	K562	YBX3
chr6	34725694	34725733	+	CDS,intron-Distal,intron-Proximal	3.19121	22.02137	K562	YBX3
chr6	34730371	34730402	+	5'-UTR,CDS,intron-Proximal	3.04584	21.16154	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 54 entries

eCLIP assay for SNRPC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNRPC is not available on ENCORE database.
93 RBPs can affect the levels of SNRPC.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNRPC is not available on ENCORE database.

93 RBPs can affect the gene expression of SNRPC :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNRPC	ENSG00000124562.5	903.08190	2489.36770	-1.46290	46.58260	44.14550	HepG2	RBM25
SNRPC	ENSG00000124562.5	7660.94420	5043.62800	0.60300	21.77600	20.29220	K562	AGGF1
SNRPC	ENSG00000124562.5	1639.18710	2742.79610	-0.74270	17.09610	15.73470	HepG2	QKI
SNRPC	ENSG00000124562.5	1263.36540	2531.50750	-1.00270	16.24370	14.55290	HepG2	PABPC4
SNRPC	ENSG00000124562.5	1645.83050	2532.78730	-0.62190	15.16520	14.08320	HepG2	PTBP1
SNRPC	ENSG00000124562.5	2811.11180	4584.67000	-0.70570	14.54850	13.26710	K562	HNRNPC
SNRPC	ENSG00000124562.5	4035.15320	2715.61960	0.57120	14.24430	12.97750	K562	FXR1
SNRPC	ENSG00000124562.5	4261.08760	6226.87840	-0.54730	13.17270	11.71310	K562	NSUN2
SNRPC	ENSG00000124562.5	1552.86380	2239.19690	-0.52810	12.10270	11.09210	HepG2	SRSF9
SNRPC	ENSG00000124562.5	4803.51090	2899.87520	0.72800	12.25860	10.67320	K562	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 104 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNRPC is not available on ENCORE database.

7 RBPs can affect the splicing of SNRPC :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SNRPC	ENSG00000124562.5	chr6	+	34725625	34725731			34725182	34725328	34730371	34730480	-0.09700	0.00000	0.00000	excluded	K562	SF3B4
SE	SNRPC	ENSG00000124562.5	chr6	+	34725625	34725731			34725182	34725328	34730371	34730480	-0.05700	0.00000	0.00000	excluded	HepG2	U2AF2
SE	SNRPC	ENSG00000124562.5	chr6	+	34725625	34725731			34725182	34725328	34730371	34730619	-0.14300	0.00000	0.00000	excluded	K562	AQR
SE	SNRPC	ENSG00000124562.5	chr6	+	34725625	34725731			34725182	34725328	34730371	34730480	-0.05100	0.00000	0.00001	excluded	HepG2	CDC40
SE	SNRPC	ENSG00000124562.5	chr6	+	34725625	34725731			34725182	34725328	34730371	34730480	-0.13500	0.00000	0.00000	excluded	HepG2	SF3A3
SE	SNRPC	ENSG00000124562.5	chr6	+	34725688	34725731			34725182	34725328	34730371	34730480	-0.06900	0.00000	0.00000	excluded	K562	SF3B1
MXE	SNRPC	ENSG00000124562.5	chr6	+	34730371	34730480	34735684	34735774	34725688	34725731	34738067	34738172	-0.07700	0.00006	0.00265	2included	K562	PRPF8
MXE	SNRPC	ENSG00000124562.5	chr6	+	34725688	34725731	34730324	34730480	34725182	34725328	34735684	34735774	-0.09800	0.00046	0.00465	2included	K562	AQR
MXE	SNRPC	ENSG00000124562.5	chr6	+	34725688	34725731	34730301	34730480	34725182	34725328	34735684	34735774	-0.09800	0.00048	0.00476	2included	K562	AQR

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNRPC

General Information

Functions

Localization

Domains (AlphaFold: SNRPC)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNRPC is not avaliable on ENCORE database.

19 proteins are bound to SNRPC RNA:

eCLIP assay for SNRPC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNRPC is not available on ENCORE database.

93 RBPs can affect the gene expression of SNRPC :

The Knockdown/knockout RNA-Seq assay for SNRPC is not available on ENCORE database.

7 RBPs can affect the splicing of SNRPC :

The Knockdown/knockout RNA-Seq assay for SNRPC is not avaliable on ENCORE database.