SGSM2

General Information

Gene Name       : SGSM2
Gene ID             : ENSG00000141258.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SGSM2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SGSM2ENSG00000141258.125.5514.169.86ENCSR000AEF
HepG2SGSM2ENSG00000141258.1251.2525.8938.57ENCSR985KAT
K562SGSM2ENSG00000141258.1211.7410.0510.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SGSM2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SGSM2 RNA is bound by 22 proteins.  







eCLIP assay for SGSM2 is not avaliable on ENCORE database.





22 proteins are bound to SGSM2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1722841772284235+3'-UTR4.291163.99014HepG2PABPN1
chr1722650022265082+3'-UTR,CDS3.367413.60157HepG2GRWD1
chr1722673512267428+3'-UTR,5'-UTR,CDS,intron-Proximal4.440876.22987HepG2SRSF1
chr1722838892284015+3'-UTR3.111566.12437HepG2LSM11
chr1722678982267954+3'-UTR,CDS5.6911811.82888HepG2PPIG
chr1722663212266422+3'-UTR,CDS3.332576.88650HepG2GRWD1
chr1722682262268345+3'-UTR,CDS3.173703.29078HepG2SRSF1
chr1722841942284272+3'-UTR4.199433.87930K562UPF1
chr1722839022284014+3'-UTR4.009055.56088HepG2PABPN1
chr1722834122283430+3'-UTR,intron-Distal3.373513.21205HepG2EIF3H
chr1722674262267474+3'-UTR,CDS3.588726.13978HepG2PPIG
chr1722842312284292+3'-UTR4.7934014.09713HepG2ZC3H11A
chr1722649812265079+3'-UTR,CDS4.3323816.41421HepG2PPIG
chr1722836262283680+3'-UTR3.397863.77473HepG2PABPN1
chr1722650792265093+3'-UTR,CDS3.565816.98305HepG2PPIG
chr1722828202282857+3'-UTR,intron-Distal,intron-Proximal4.254996.42098HepG2EIF3H
chr1722682252268345+3'-UTR,CDS5.2441814.11592HepG2PPIG
chr1722841962284270+3'-UTR3.833306.22966HepG2LSM11
chr1722678832267954+3'-UTR,CDS,intron-Proximal4.268973.56076K562BUD13
chr1722842202284288+3'-UTR4.412517.84586HepG2EIF3H
chr1722649292264981+3'-UTR,CDS,intron-Proximal5.5472910.41518HepG2PPIG
chr1722836482283709+3'-UTR4.547474.56106HepG2EIF3H
chr1722662512266342+3'-UTR,CDS,intron-Proximal4.0214738.52717HepG2PRPF8
chr1722838072283862+3'-UTR3.375753.84295HepG2LSM11
chr1722673532267409+5'-UTR,CDS4.8216413.50799HepG2PPIG
chr1722408862241029+5'-UTR,CDS4.415235.42409HepG2SRSF1
chr1722667772266862+5'-UTR,CDS4.867417.71151HepG2GRWD1
chr1722408052240931+5'-UTR3.144273.18218HepG2NCBP2
chr1722668492266893+5'-UTR,CDS3.781188.74774HepG2PPIG
chr1722766362276764+CDS4.057966.28735K562DDX24
chr1722756062275662+CDS,intron-Proximal4.684658.08215HepG2EFTUD2
chr1722791232279158+CDS3.138483.73413HepG2PPIG
chr1722795312279616+CDS,intron-Proximal3.007568.59760HepG2PRPF8
chr1722468672246912+CDS,intron-Distal5.2355517.38208HepG2PPIG
chr1722763242276375+CDS3.316384.94718HepG2PPIG
chr1722823422282380+CDS3.897863.19682HepG2PABPN1
chr1722663922266430+CDS,intron-Proximal3.057933.22604HepG2SRSF1
chr1722662112266292+CDS,intron-Proximal3.3898013.40405HepG2PPIG
chr1722468422246906+CDS,intron-Distal4.081813.36385K562UCHL5
chr1722800272280053+CDS3.761504.96634HepG2PPIG
chr1722661702266190+CDS,intron-Distal,intron-Proximal4.0212822.15296HepG2PRPF8
chr1722794772279540+CDS4.197464.69889HepG2GRWD1
chr1722756822275741+CDS4.026863.80193HepG2GRWD1
chr1722661902266251+CDS,intron-Proximal4.3422860.97976HepG2PRPF8
chr1722468332246909+CDS,intron-Distal,intron-Proximal3.700725.76243HepG2BUD13
chr1722468522246893+CDS,intron-Distal3.698833.14999HepG2GRWD1
chr1722662162266300+CDS,intron-Proximal3.6847311.53497HepG2BUD13
chr1722761772276269+CDS,intron-Proximal3.902484.84442HepG2SF3B4
chr1722663952266429+CDS,intron-Proximal3.208826.92683HepG2PPIG
chr1722661352266211+CDS,intron-Distal,intron-Proximal3.4272712.01090HepG2PPIG
chr1722766282276703+CDS3.494495.14253HepG2GRWD1
chr1722787802278834+CDS,intron-Proximal5.031735.10740K562DDX24
chr1722661312266249+CDS,intron-Distal,intron-Proximal4.693015.58500K562UCHL5
chr1722801932280258+CDS,intron-Proximal4.600695.86025HepG2SF3B4
chr1722655442265589+CDS,intron-Proximal3.605795.62208HepG2PRPF8
chr1722661512266238+CDS,intron-Distal,intron-Proximal3.045543.80333HepG2AQR
chr1722766532276705+CDS4.094023.19682HepG2PABPN1
chr1722803442280405+CDS,intron-Proximal4.4371119.28365HepG2PRPF8
chr1722661872266304+CDS,intron-Proximal3.663978.28777K562PRPF8
chr1722662002266274+CDS,intron-Proximal4.416426.87873HepG2EFTUD2
chr1722754862275549+CDS,intron-Proximal3.454628.54450HepG2PPIG
chr1722823312282373+CDS4.223458.09084HepG2PPIG
chr1722766262276725+CDS4.1178614.97716HepG2PPIG
chr1722790762279123+CDS3.258645.47500HepG2PPIG
chr1722655292265564+CDS3.466165.86107HepG2PPIG
chr1722801892280260+CDS,intron-Proximal4.419405.29549HepG2EFTUD2
chr1722667952266845+CDS3.788479.28206HepG2PPIG
chr1722789802279042+CDS3.622163.01533HepG2SRSF1
chr1722762632276374+CDS3.141267.26251HepG2GRWD1
chr1722745702274620+CDS4.238326.64430HepG2PPIG
chr1722686012268634+CDS4.854966.46301HepG2PPIG
chr1722788002278853+CDS3.979873.61584HepG2SRSF1
chr1722788032278845+CDS4.185044.23295HepG2GRWD1
chr1722667682266795+CDS3.681889.04641HepG2PPIG
chr1722667582266768+CDS,intron-Proximal3.232535.08732HepG2PPIG
chr1722800462280102+CDS4.083533.82000HepG2GRWD1
chr1722655212265565+CDS,intron-Proximal3.223013.40321HepG2GRWD1
chr1722468392246867+CDS,intron-Distal4.059139.56105HepG2PPIG
chr1722758162275896+intron-Distal,intron-Proximal3.568545.52031HepG2GRWD1
chr1722731562273203+intron-Distal4.119574.17531HepG2RBFOX2
chr1722658162265909+intron-Distal3.671514.34707HepG2HNRNPK
chr1722758392275915+intron-Distal,intron-Proximal3.617364.40383K562UCHL5
chr1722758572275907+intron-Distal,intron-Proximal3.585896.39220HepG2RBFOX2
chr1722658412265922+intron-Distal5.428495.88499HepG2DDX59
chr1722758212275892+intron-Distal,intron-Proximal4.723465.33214K562PRPF8
chr1722416112241675+intron-Distal4.660884.80665HepG2QKI
chr1722659092265964+intron-Distal3.904803.41442HepG2HNRNPK
chr1722416752241777+intron-Distal5.7551613.44723HepG2QKI
chr1722413742241433+intron-Distal4.217134.43799HepG2CSTF2T
chr1722758272275917+intron-Distal,intron-Proximal3.202503.29171HepG2EIF3D
chr1722758512275911+intron-Distal,intron-Proximal4.4391612.04084HepG2EFTUD2
chr1722787012278776+intron-Proximal4.5362210.50807HepG2SF3B4
chr1722757822275852+intron-Proximal4.7475816.86359HepG2PRPF8
chr1722763992276452+intron-Proximal4.356845.04056HepG2RBFOX2
chr1722801112280144+intron-Proximal4.818086.69228HepG2PRPF8
chr1722768082276851+intron-Proximal3.804976.25527HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SGSM2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SGSM2 is not available on ENCORE database.

  • 99 RBPs can affect the levels of SGSM2.  








The Knockdown/knockout RNA-Seq assay for SGSM2 is not available on ENCORE database.





99 RBPs can affect the gene expression of SGSM2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SGSM2ENSG00000141258.82184.569001420.753400.6206016.8521015.61940HepG2ACO1
SGSM2ENSG00000141258.81903.445701284.911900.566804.966903.58410HepG2AKAP8
SGSM2ENSG00000141258.81796.341201427.450500.331504.484403.52420HepG2AKAP8L
SGSM2ENSG00000141258.81649.30040891.688600.8871012.1327010.58060HepG2ASCC1
SGSM2ENSG00000141258.81122.920401411.88550-0.330402.794201.38130HepG2ATP5C1
SGSM2ENSG00000141258.82520.873202034.599100.309103.156502.42960HepG2AUH
SGSM2ENSG00000141258.8733.606101108.13970-0.595106.266705.40790HepG2BOP1
SGSM2ENSG00000141258.81973.018301420.471000.4739010.760109.62330HepG2CKAP4
SGSM2ENSG00000141258.81689.446201195.439500.498908.670007.65220HepG2CELF1
SGSM2ENSG00000141258.81661.707101032.290500.686707.431506.45180HepG2DDX3X
SGSM2ENSG00000141258.81492.38150886.984400.750506.098405.21020HepG2DDX6
SGSM2ENSG00000141258.81035.75490771.547700.424803.484302.70190HepG2DNAJC21
SGSM2ENSG00000141258.81135.43910764.856200.569906.464305.52630HepG2DNAJC2
SGSM2ENSG00000141258.81314.08800852.455800.624306.039005.18170HepG2EIF2S1
SGSM2ENSG00000141258.8659.95320941.95560-0.513303.575902.85160HepG2EIF4A3
SGSM2ENSG00000141258.81685.43600917.332600.877508.354807.19100HepG2EIF4B
SGSM2ENSG00000141258.83424.788502336.157900.5518012.1623011.04810HepG2ETF1
SGSM2ENSG00000141258.81015.10560723.695800.488105.116003.49400HepG2FAM120A
SGSM2ENSG00000141258.81993.293101580.325100.334801.962101.30710HepG2FIP1L1
SGSM2ENSG00000141258.81269.27730879.735200.528802.430301.38090HepG2FUS
SGSM2ENSG00000141258.81913.98180950.721301.0094015.9648014.44650HepG2FXR1
SGSM2ENSG00000141258.82301.08660881.761101.3838027.0715025.06870HepG2G3BP1
SGSM2ENSG00000141258.81382.31340936.327600.561905.264904.02310HepG2G3BP2
SGSM2ENSG00000141258.81611.933601153.176000.483103.860503.11560HepG2GPKOW
SGSM2ENSG00000141258.81332.14460984.639900.436002.346101.31960HepG2GRSF1
SGSM2ENSG00000141258.81621.321801356.428800.257302.885601.88950HepG2HDGF
SGSM2ENSG00000141258.81423.60510778.940700.869907.831806.82800HepG2HNRNPA1
SGSM2ENSG00000141258.81243.02620878.809700.500102.980501.52580HepG2HNRNPAB
SGSM2ENSG00000141258.82005.17940893.265301.1665023.5749021.73080HepG2HNRNPK
SGSM2ENSG00000141258.81439.239801170.704400.297804.350303.51870HepG2HNRNPL
SGSM2ENSG00000141258.81484.39150860.736300.7861019.7132018.20850HepG2HNRNPU
SGSM2ENSG00000141258.81937.953001398.549500.470503.198201.87110HepG2HSPD1
SGSM2ENSG00000141258.81343.75350896.229600.584205.569304.64300HepG2IGF2BP2
SGSM2ENSG00000141258.81809.52200841.319701.104802.267501.38390HepG2IGF2BP3
SGSM2ENSG00000141258.81255.57100879.206800.514008.525807.30700HepG2ILF2
SGSM2ENSG00000141258.81302.49140901.568500.530703.557902.40270HepG2KHSRP
SGSM2ENSG00000141258.81861.81290978.807800.9275012.6766011.37660HepG2NCBP2
SGSM2ENSG00000141258.8793.39930496.440300.676303.689102.02750HepG2NOLC1
SGSM2ENSG00000141258.81821.13930925.006300.977203.213702.02990HepG2NONO
SGSM2ENSG00000141258.8654.01970972.27780-0.572002.848401.94540HepG2PABPC1
SGSM2ENSG00000141258.81102.21430871.493200.338702.047801.41860HepG2PABPC4
SGSM2ENSG00000141258.81606.20850895.948700.8421011.5647010.46240HepG2PCBP1
SGSM2ENSG00000141258.81028.49470767.701000.421804.334503.43290HepG2PPIL4
SGSM2ENSG00000141258.81827.10640911.725301.0028031.5763030.13170HepG2PTBP1
SGSM2ENSG00000141258.81725.975601216.612800.504406.242305.39490HepG2PUF60
SGSM2ENSG00000141258.81911.560401291.538500.5656016.0321014.84590HepG2PUM1
SGSM2ENSG00000141258.81991.988901290.563800.626105.289204.37620HepG2PUM2
SGSM2ENSG00000141258.81991.936301447.133400.460909.469808.44430HepG2PUS1
SGSM2ENSG00000141258.81259.01030987.284600.350703.570002.87340HepG2QKI
SGSM2ENSG00000141258.8426.05600803.10790-0.914602.043401.42880HepG2RAVER1
SGSM2ENSG00000141258.8731.81330474.323200.625504.534302.27060HepG2RBM14
SGSM2ENSG00000141258.81998.418401615.662700.306602.274001.48760HepG2RBM15
SGSM2ENSG00000141258.81086.72170896.075800.278202.077501.48770HepG2RBM25
SGSM2ENSG00000141258.81739.634701090.111600.674204.833203.50210HepG2RBM27
SGSM2ENSG00000141258.82018.552801014.609500.9923031.7814030.37260HepG2NELFE
SGSM2ENSG00000141258.81648.48290945.067400.8025019.7294018.34010HepG2RECQL
SGSM2ENSG00000141258.81063.13650787.772400.432403.839903.12650HepG2RPS19
SGSM2ENSG00000141258.81664.542501005.270100.727407.316706.05420HepG2RPS2
SGSM2ENSG00000141258.82123.139301629.482100.381702.027401.44920HepG2SF3A3
SGSM2ENSG00000141258.8563.313101089.25760-0.9513013.5313012.09190HepG2SF3B1
SGSM2ENSG00000141258.81586.55450949.108900.7412017.2580015.97240HepG2SF3B4
SGSM2ENSG00000141258.81522.714601166.645200.384206.744105.72590HepG2SLBP
SGSM2ENSG00000141258.81480.74210893.828400.7282017.0031015.61340HepG2SMN1
SGSM2ENSG00000141258.81317.32110821.140200.681803.633202.52250HepG2SMNDC1
SGSM2ENSG00000141258.8811.548201172.10270-0.530403.552602.40550HepG2SRSF3
SGSM2ENSG00000141258.82859.355901201.288201.2510061.2873058.87930HepG2SRSF5
SGSM2ENSG00000141258.81334.97330806.036600.7278017.0782015.91620HepG2SRSF9
SGSM2ENSG00000141258.81374.19770929.815600.563504.171302.79320HepG2STIP1
SGSM2ENSG00000141258.82681.562001366.144000.9729044.6349042.67500HepG2SUCLG1
SGSM2ENSG00000141258.81715.121601001.798200.775602.955302.25960HepG2SUPV3L1
SGSM2ENSG00000141258.81143.39260890.619800.360303.610402.98530HepG2TAF15
SGSM2ENSG00000141258.81423.919101072.740400.408503.469202.66790HepG2TARDBP
SGSM2ENSG00000141258.81296.87410836.214800.633009.443608.61700HepG2TIAL1
SGSM2ENSG00000141258.81237.97260843.852500.552806.879806.05960HepG2TRIM56
SGSM2ENSG00000141258.82323.930101188.661300.9671021.1955018.63380HepG2TUFM
SGSM2ENSG00000141258.82132.997301258.233200.761409.196307.63070HepG2UBE2L3
SGSM2ENSG00000141258.81145.98890591.641200.953705.322004.26440HepG2UCHL5
SGSM2ENSG00000141258.81313.49700883.618700.571802.770701.71530HepG2XRCC6
SGSM2ENSG00000141258.81539.12450986.167200.642101.997201.37320HepG2XRN2
SGSM2ENSG00000141258.8535.52680871.78610-0.703006.557405.71670K562AQR
SGSM2ENSG00000141258.8866.13170703.224600.300502.471201.32970K562DDX21
SGSM2ENSG00000141258.81025.83260777.435300.399904.685303.86820K562DDX47
SGSM2ENSG00000141258.8798.11290652.525400.290502.166401.51710K562EIF2S2
SGSM2ENSG00000141258.8622.24410396.793200.649003.201702.11250K562EIF3A
SGSM2ENSG00000141258.8658.23880406.399400.695604.834003.41760K562EIF3D
SGSM2ENSG00000141258.8369.87790223.911600.724005.671104.54590K562EIF3G
SGSM2ENSG00000141258.8498.19590377.182500.401402.932401.73350K562EIF4B
SGSM2ENSG00000141258.81502.414101103.041600.445704.297803.13470K562EIF4G2
SGSM2ENSG00000141258.855.89560161.20100-1.528108.111506.77390K562G3BP2
SGSM2ENSG00000141258.8445.19910312.142400.512102.566001.59010K562IGF2BP2
SGSM2ENSG00000141258.8176.19550298.11550-0.758703.614002.53100K562KRR1
SGSM2ENSG00000141258.8440.99060327.865000.427502.074201.34120K562MAGOH
SGSM2ENSG00000141258.8425.73040327.171800.379802.207501.39140K562MATR3
SGSM2ENSG00000141258.8949.307501175.69840-0.308602.392501.34580K562MSI2
SGSM2ENSG00000141258.8873.695301206.62190-0.465804.405302.50050K562NOL12
SGSM2ENSG00000141258.8518.91960389.043300.415502.106701.32780K562PSIP1
SGSM2ENSG00000141258.8835.290401203.47410-0.526904.942503.85510K562PUF60
SGSM2ENSG00000141258.8505.42270718.46900-0.507403.594802.98760K562PUS1
SGSM2ENSG00000141258.8403.92710269.907200.581502.987501.94380K562RPS3
SGSM2ENSG00000141258.8257.32420167.497900.619303.556202.58220K562SF3B4
SGSM2ENSG00000141258.8377.14510260.583400.533302.954001.85660K562SRSF4
SGSM2ENSG00000141258.8463.34210295.005400.651202.320001.37210K562SRSF5
SGSM2ENSG00000141258.8477.53530316.034500.595402.893302.17000K562TARDBP
SGSM2ENSG00000141258.8493.44100304.862600.694606.060004.77890K562TIA1
SGSM2ENSG00000141258.8519.73570374.192700.473902.706501.78190K562TIAL1
SGSM2ENSG00000141258.8435.26880299.266500.540403.462902.21350K562TRA2A
SGSM2ENSG00000141258.8969.15770750.149200.369504.121603.26130K562UPF1
SGSM2ENSG00000141258.8830.48610667.495300.315103.103302.20880K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SGSM2 is not available on ENCORE database.





9 RBPs can affect the splicing of SGSM2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESGSM2ENSG00000141258.8chr17+228272522828102282329228249722835582283969-0.177000.000290.02324excludedHepG2RBM22
SESGSM2ENSG00000141258.8chr17+2270564227069922685082268635227455522747090.382000.000130.03930includedHepG2ILF3
SESGSM2ENSG00000141258.8chr17+2270458227069922685082268635227455522747090.323000.003040.06553includedHepG2HNRNPK
SESGSM2ENSG00000141258.8chr17+227056422706992268508226863522745552274709-0.349000.000010.00119excludedHepG2SFPQ
SESGSM2ENSG00000141258.8chr17+2245170224535422407912241039224683822469140.486000.000000.00000includedHepG2HNRNPL
SESGSM2ENSG00000141258.8chr17+2245170224535422407912241039224683822469140.645000.000000.00000includedK562HNRNPL
SESGSM2ENSG00000141258.8chr17+227056422706992268508226863522745552274709-0.419000.000000.00258excludedK562SBDS
SESGSM2ENSG00000141258.8chr17+227056422706992268481226863522745552274709-0.354000.000000.00054excludedHepG2PCBP1
SESGSM2ENSG00000141258.8chr17+227056422706992268508226863522745552274709-0.503000.000130.00729excludedHepG2HNRNPC
RISGSM2ENSG00000141258.8chr17+226613122664282266131226619922662822266428-0.376000.000000.00000excludedHepG2RBM22
RISGSM2ENSG00000141258.8chr17+2266131226642822661312266199226628222664280.175000.000170.01467includedHepG2LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SGSM2 is not avaliable on ENCORE database.