SCAF11

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SCAF11	ENSG00000139218.17	84.80	73.40	79.10	ENCSR000AEF
HepG2	SCAF11	ENSG00000139218.17	28.39	49.07	38.73	ENCSR985KAT
K562	SCAF11	ENSG00000139218.17	51.18	53.83	52.50	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SCAF11 is not avaliable on ENCORE database.

Proteins bound to RNA

SCAF11 RNA is bound by 35 proteins.

eCLIP assay for SCAF11 is not avaliable on ENCORE database.

35 proteins are bound to SCAF11 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	46357888	46357961	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.57485	3.28742	K562	HLTF
chr12	46315825	46315956	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.42358	5.54422	HepG2	FXR2
chr12	46354788	46354831	-	3'-UTR,intron-Distal	4.27853	4.07352	K562	KHSRP
chr12	46354723	46354788	-	3'-UTR,intron-Distal	4.75488	7.00634	K562	KHSRP
chr12	46357928	46357972	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.59193	4.08604	HepG2	PPIG
chr12	46354292	46354347	-	3'-UTR,intron-Distal	4.26588	4.80438	HepG2	KHSRP
chr12	46357888	46357966	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.34436	23.24634	HepG2	BCLAF1
chr12	46354612	46354652	-	3'-UTR,intron-Distal	3.27007	4.08064	K562	KHSRP
chr12	46384134	46384239	-	5'-UTR,intron-Distal	3.15821	11.78672	K562	FMR1
chr12	46355620	46355641	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.23555	8.94445	HepG2	BCLAF1
chr12	46328229	46328278	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.23644	4.61143	K562	UCHL5
chr12	46384257	46384336	-	5'-UTR,intron-Distal	3.15504	3.39415	HepG2	DDX3X
chr12	46322562	46322648	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.07389	3.19080	K562	U2AF2
chr12	46384255	46384382	-	5'-UTR,intron-Distal,intron-Proximal	3.08641	4.51385	K562	FMR1
chr12	46355548	46355620	-	5'-UTR,CDS,intron-Distal	5.05598	26.29709	HepG2	BCLAF1
chr12	46384136	46384233	-	5'-UTR,intron-Distal	3.79345	8.85042	HepG2	GRWD1
chr12	46384134	46384236	-	5'-UTR,intron-Distal	4.07437	17.14389	K562	FXR2
chr12	46322570	46322641	-	5'-UTR,CDS,intron-Distal	3.79798	12.82131	HepG2	BCLAF1
chr12	46355577	46355624	-	5'-UTR,CDS,intron-Distal	3.11078	7.63960	K562	UCHL5
chr12	46357888	46357949	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.16715	7.92361	K562	ZNF622
chr12	46355521	46355589	-	5'-UTR,CDS,intron-Distal	3.24249	3.68839	K562	KHSRP
chr12	46328040	46328068	-	5'-UTR,CDS,intron-Distal	3.90638	8.49795	HepG2	BCLAF1
chr12	46328234	46328288	-	5'-UTR,CDS,intron-Distal	3.64614	7.05173	K562	ZNF622
chr12	46384229	46384354	-	5'-UTR,intron-Distal,intron-Proximal	3.78376	7.60655	K562	DDX3X
chr12	46384235	46384307	-	5'-UTR,intron-Distal	3.24128	5.57447	HepG2	GRWD1
chr12	46384138	46384229	-	5'-UTR,intron-Distal	3.26143	8.35983	K562	DDX3X
chr12	46384247	46384333	-	5'-UTR,intron-Distal	3.17162	5.41277	K562	UCHL5
chr12	46355524	46355641	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.35073	3.83856	K562	CPSF6
chr12	46322612	46322643	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.32459	6.80152	K562	YBX3
chr12	46328261	46328290	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.21373	14.84999	HepG2	BCLAF1
chr12	46357888	46357945	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.31373	4.39710	K562	CPSF6
chr12	46384218	46384367	-	5'-UTR,intron-Distal,intron-Proximal	4.62266	17.32521	HepG2	NCBP2
chr12	46384133	46384222	-	5'-UTR,intron-Distal	3.23609	7.15397	HepG2	PPIG
chr12	46355527	46355641	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.62880	4.74293	HepG2	ZNF800
chr12	46384266	46384361	-	5'-UTR,intron-Distal,intron-Proximal	3.85553	8.28260	K562	FXR2
chr12	46355410	46355497	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.01627	5.35117	HepG2	PRPF8
chr12	46328229	46328261	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.68537	15.18491	HepG2	BCLAF1
chr12	46355475	46355548	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.35934	20.29031	HepG2	BCLAF1
chr12	46357887	46357945	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.39154	3.92909	K562	GRWD1
chr12	46339030	46339057	-	CDS,intron-Distal,intron-Proximal	3.30211	5.04943	K562	ZNF622
chr12	46326913	46326948	-	CDS,intron-Distal,intron-Proximal	3.51344	9.41803	HepG2	BCLAF1
chr12	46320263	46320374	-	CDS,intron-Distal	3.07030	4.01228	K562	HLTF
chr12	46321021	46321091	-	CDS,intron-Distal	3.13790	3.76903	K562	SAFB
chr12	46325289	46325396	-	CDS,intron-Distal,intron-Proximal	3.91199	19.32192	HepG2	BCLAF1
chr12	46325296	46325393	-	CDS,intron-Distal	3.21984	4.15299	K562	GRWD1
chr12	46320543	46320585	-	CDS,intron-Distal,intron-Proximal	3.63110	4.49016	HepG2	FXR2
chr12	46345394	46345457	-	CDS,intron-Distal,intron-Proximal	5.30077	5.68502	HepG2	PRPF8
chr12	46342219	46342269	-	CDS,intron-Distal,intron-Proximal	3.30211	5.04943	K562	ZNF622
chr12	46320684	46320733	-	CDS,intron-Distal	3.93074	3.36483	HepG2	G3BP1
chr12	46321295	46321371	-	CDS,intron-Distal	5.33819	17.45530	HepG2	BCLAF1
chr12	46322239	46322278	-	CDS,intron-Distal	3.95821	8.08603	HepG2	BCLAF1
chr12	46320939	46320987	-	CDS,intron-Distal	4.14465	9.98400	HepG2	BCLAF1
chr12	46320071	46320130	-	CDS,intron-Distal	3.57329	6.87558	HepG2	HLTF
chr12	46320642	46320742	-	CDS,intron-Distal	5.71587	24.00850	K562	UCHL5
chr12	46325316	46325399	-	CDS,intron-Distal,intron-Proximal	4.40771	5.94114	HepG2	BUD13
chr12	46321300	46321338	-	CDS,intron-Distal	4.52494	11.87764	K562	LIN28B
chr12	46321278	46321334	-	CDS,intron-Distal	4.49685	10.01989	K562	UCHL5
chr12	46321041	46321103	-	CDS,intron-Distal	3.36632	4.88141	HepG2	GRWD1
chr12	46315861	46315925	-	CDS,intron-Distal	3.11553	6.09950	HepG2	BCLAF1
chr12	46320228	46320301	-	CDS,intron-Distal	3.04215	10.81124	K562	UCHL5
chr12	46321879	46321932	-	CDS,intron-Distal	3.77772	9.43524	HepG2	BCLAF1
chr12	46321265	46321300	-	CDS,intron-Distal	3.62763	3.09884	K562	LIN28B
chr12	46326960	46327015	-	CDS,intron-Distal,intron-Proximal	3.06734	6.12266	HepG2	BCLAF1
chr12	46321404	46321467	-	CDS,intron-Distal	4.27486	10.89658	HepG2	BCLAF1
chr12	46321035	46321092	-	CDS,intron-Distal	3.64387	3.88337	HepG2	FXR2
chr12	46322229	46322297	-	CDS,intron-Distal	3.25632	9.23212	K562	ZNF622
chr12	46345483	46345511	-	CDS,intron-Distal,intron-Proximal	4.43276	11.55759	HepG2	BCLAF1
chr12	46318619	46318669	-	CDS,intron-Distal,intron-Proximal	3.00120	3.06571	HepG2	IGF2BP1
chr12	46321978	46322057	-	CDS,intron-Distal	3.06546	5.42507	HepG2	BCLAF1
chr12	46320659	46320762	-	CDS,intron-Distal	3.79852	3.25970	K562	PPIL4
chr12	46320237	46320307	-	CDS,intron-Distal	5.24835	16.08161	HepG2	BCLAF1
chr12	46318801	46318874	-	CDS,intron-Distal,intron-Proximal	3.59605	6.16549	HepG2	U2AF2
chr12	46321317	46321340	-	CDS,intron-Distal	4.11579	4.15208	K562	RBM15
chr12	46326914	46326940	-	CDS,intron-Distal	3.29239	3.02345	K562	ZNF622
chr12	46325288	46325351	-	CDS,intron-Distal,intron-Proximal	4.14935	7.14937	K562	ZNF622
chr12	46321032	46321099	-	CDS,intron-Distal	3.07572	6.46183	K562	UCHL5
chr12	46326964	46327007	-	CDS,intron-Distal,intron-Proximal	3.12815	4.14618	K562	ZNF622
chr12	46321605	46321697	-	CDS,intron-Distal	5.52340	20.21434	HepG2	BCLAF1
chr12	46320675	46320791	-	CDS,intron-Distal	3.58775	15.25431	HepG2	BCLAF1
chr12	46325351	46325396	-	CDS,intron-Distal,intron-Proximal	3.85188	5.47804	K562	ZNF622
chr12	46315972	46316022	-	CDS,intron-Distal	3.94405	4.77518	HepG2	U2AF2
chr12	46342286	46342321	-	CDS,intron-Distal,intron-Proximal	4.20368	4.39669	K562	BUD13
chr12	46322223	46322320	-	CDS,intron-Distal	3.15213	11.16442	K562	UCHL5
chr12	46321176	46321210	-	CDS,intron-Distal	3.40227	6.19339	HepG2	BCLAF1
chr12	46321287	46321336	-	CDS,intron-Distal	3.03565	3.69775	K562	YBX3
chr12	46318633	46318721	-	CDS,intron-Distal,intron-Proximal	3.82537	6.08880	K562	LIN28B
chr12	46321271	46321381	-	CDS,intron-Distal	4.77919	7.14126	K562	GRWD1
chr12	46320247	46320277	-	CDS,intron-Distal	3.26260	3.04831	K562	RBM15
chr12	46322152	46322188	-	CDS,intron-Distal	3.69886	6.67313	HepG2	BCLAF1
chr12	46321272	46321325	-	CDS,intron-Distal	3.46308	7.70405	K562	ZNF622
chr12	46322364	46322428	-	CDS,intron-Distal	3.04225	6.64273	K562	YBX3
chr12	46320390	46320445	-	CDS,intron-Distal,intron-Proximal	3.55109	6.87558	HepG2	HLTF
chr12	46321281	46321371	-	CDS,intron-Distal	4.53247	6.01390	HepG2	GRWD1
chr12	46342291	46342321	-	CDS,intron-Distal,intron-Proximal	3.63543	5.56491	HepG2	BCLAF1
chr12	46342283	46342370	-	CDS,intron-Distal,intron-Proximal	3.68039	4.50936	K562	SF3B4
chr12	46316716	46316836	-	CDS,intron-Distal,intron-Proximal	3.61948	5.99043	HepG2	GRWD1
chr12	46339030	46339091	-	CDS,intron-Distal,intron-Proximal	4.42259	14.68146	HepG2	BCLAF1
chr12	46320044	46320117	-	CDS,intron-Distal	3.24631	4.56345	K562	SAFB
chr12	46345469	46345517	-	CDS,intron-Distal,intron-Proximal	3.72242	5.51703	K562	BUD13
chr12	46321273	46321342	-	CDS,intron-Distal	4.69109	3.15232	HepG2	LIN28B
chr12	46320539	46320599	-	CDS,intron-Distal,intron-Proximal	3.68336	9.56042	K562	ZNF622
chr12	46320765	46320900	-	CDS,intron-Distal	5.49813	21.02893	K562	UCHL5
chr12	46325203	46325377	-	CDS,intron-Distal,intron-Proximal	4.39197	8.40808	K562	GPKOW
chr12	46320234	46320294	-	CDS,intron-Distal	3.72327	4.92987	K562	MTPAP
chr12	46315123	46315180	-	intron-Distal,intron-Proximal	4.21277	4.30948	K562	LIN28B
chr12	46346210	46346290	-	intron-Distal	4.16496	4.32294	K562	KHDRBS1
chr12	46367101	46367165	-	intron-Distal	4.70943	6.10195	HepG2	PTBP1
chr12	46325138	46325225	-	intron-Distal,intron-Proximal	4.17691	3.85435	K562	PRPF8
chr12	46316434	46316492	-	intron-Distal,intron-Proximal	3.99319	10.34114	K562	KHSRP
chr12	46365266	46365336	-	intron-Distal	3.27335	3.35050	HepG2	SUGP2
chr12	46358669	46358821	-	intron-Distal	3.52510	7.28538	K562	HNRNPL
chr12	46342375	46342447	-	intron-Distal,intron-Proximal	3.45855	3.90146	K562	KHSRP
chr12	46369604	46369734	-	intron-Distal,intron-Proximal	4.97363	8.49499	K562	KHSRP
chr12	46364136	46364214	-	intron-Distal	3.02284	3.10640	HepG2	SUGP2
chr12	46325161	46325238	-	intron-Distal,intron-Proximal	3.83973	6.59336	K562	KHSRP
chr12	46345316	46345427	-	intron-Distal,intron-Proximal	4.25424	6.19377	K562	KHSRP
chr12	46342603	46342699	-	intron-Distal	4.10168	3.50031	HepG2	HNRNPL
chr12	46314609	46314728	-	intron-Distal	3.06646	10.93731	K562	FAM120A
chr12	46365517	46365591	-	intron-Distal	3.48087	4.35402	HepG2	SUGP2
chr12	46316446	46316513	-	intron-Distal,intron-Proximal	4.44716	4.80438	HepG2	KHSRP
chr12	46316961	46317063	-	intron-Distal,intron-Proximal	4.05201	12.50932	K562	KHSRP
chr12	46343965	46344092	-	intron-Distal	4.55164	7.22321	K562	PTBP1
chr12	46316607	46316657	-	intron-Distal,intron-Proximal	4.74794	7.17304	K562	KHSRP
chr12	46313981	46314086	-	intron-Distal	3.45681	10.21331	K562	KHSRP
chr12	46316178	46316238	-	intron-Distal,intron-Proximal	3.78199	6.25598	K562	KHSRP
chr12	46344857	46344923	-	intron-Distal	3.35369	3.68839	K562	KHSRP
chr12	46314876	46314930	-	intron-Distal	3.58437	4.14074	K562	UPF1
chr12	46357575	46357641	-	intron-Distal	3.76779	3.29248	HepG2	SUGP2
chr12	46343304	46343386	-	intron-Distal	3.08439	3.69083	K562	PTBP1
chr12	46316046	46316123	-	intron-Distal,intron-Proximal	3.86587	3.43867	K562	CSTF2T
chr12	46353971	46354034	-	intron-Distal	3.26751	3.04623	HepG2	KHSRP
chr12	46312973	46313030	-	intron-Distal	3.30816	6.13908	K562	FAM120A
chr12	46316390	46316433	-	intron-Distal,intron-Proximal	4.41277	5.62258	K562	KHSRP
chr12	46377476	46377565	-	intron-Distal	5.14825	4.19739	K562	EIF4G2
chr12	46384042	46384104	-	intron-Distal	3.01394	3.14365	K562	NONO
chr12	46377486	46377557	-	intron-Distal	4.18507	4.65489	K562	IGF2BP1
chr12	46343305	46343387	-	intron-Distal	4.76459	4.74221	HepG2	PTBP1
chr12	46358687	46358749	-	intron-Distal	3.51430	3.51804	HepG2	HNRNPL
chr12	46343884	46343988	-	intron-Distal	4.76781	7.24657	K562	HNRNPL
chr12	46357776	46357868	-	intron-Distal,intron-Proximal	3.93900	3.45805	K562	KHSRP
chr12	46381004	46381208	-	intron-Distal	3.18058	5.96041	K562	KHSRP
chr12	46342694	46342784	-	intron-Distal	3.36686	3.84589	K562	HNRNPL
chr12	46367108	46367165	-	intron-Distal	5.82207	10.83230	K562	PTBP1
chr12	46316537	46316598	-	intron-Distal	3.00739	6.00234	K562	KHSRP
chr12	46342470	46342571	-	intron-Distal	4.10910	4.58794	K562	KHSRP
chr12	46328418	46328583	-	intron-Distal	3.50269	7.64049	K562	KHSRP
chr12	46313480	46313543	-	intron-Distal	3.30586	6.48512	K562	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SCAF11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SCAF11 is not available on ENCORE database.
75 RBPs can affect the levels of SCAF11.

The Knockdown/knockout RNA-Seq assay for SCAF11 is not available on ENCORE database.

75 RBPs can affect the gene expression of SCAF11 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SCAF11	ENSG00000139218.13	1883.58550	2127.14740	-0.17540	1.90270	1.38110	HepG2	ACO1
SCAF11	ENSG00000139218.13	1036.71300	1647.14100	-0.66790	5.77790	4.40190	HepG2	BCCIP
SCAF11	ENSG00000139218.13	1531.48910	2126.91830	-0.47380	7.86270	6.85050	HepG2	CKAP4
SCAF11	ENSG00000139218.13	1213.73780	1649.88460	-0.44290	2.78600	1.76480	HepG2	YBX3
SCAF11	ENSG00000139218.13	1813.60320	2180.12810	-0.26560	3.71010	2.87200	HepG2	DAZAP1
SCAF11	ENSG00000139218.13	1639.64270	1967.41370	-0.26290	3.67700	2.73420	HepG2	DDX19B
SCAF11	ENSG00000139218.13	1380.22160	1652.23280	-0.25950	2.56270	1.44980	HepG2	DDX1
SCAF11	ENSG00000139218.13	2023.84870	1671.51660	0.27580	2.34640	1.51170	HepG2	DDX24
SCAF11	ENSG00000139218.13	1694.62190	2136.00150	-0.33390	2.27660	1.70420	HepG2	DDX3X
SCAF11	ENSG00000139218.13	1172.98090	1620.12840	-0.46590	7.00320	5.92550	HepG2	DNAJC21
SCAF11	ENSG00000139218.13	958.64980	1605.72720	-0.74420	21.79790	20.12520	HepG2	DNAJC2
SCAF11	ENSG00000139218.13	2737.08900	1897.81290	0.52820	3.79100	2.99130	HepG2	EIF4B
SCAF11	ENSG00000139218.13	1556.84260	2142.07860	-0.46040	2.84200	1.71350	HepG2	FUS
SCAF11	ENSG00000139218.13	1740.48250	2030.95820	-0.22270	2.50290	1.56910	HepG2	HDGF
SCAF11	ENSG00000139218.13	1736.85670	1986.01750	-0.19340	2.64950	1.98980	HepG2	HNRNPL
SCAF11	ENSG00000139218.13	1281.61000	1807.29920	-0.49590	9.80950	8.72360	HepG2	HNRNPU
SCAF11	ENSG00000139218.13	1371.49980	1846.10170	-0.42870	9.39150	8.12060	HepG2	ILF2
SCAF11	ENSG00000139218.13	1651.16670	1944.62440	-0.23600	3.02200	1.95910	HepG2	KIF1C
SCAF11	ENSG00000139218.13	1478.14490	1788.95630	-0.27530	3.28140	2.36630	HepG2	PARN
SCAF11	ENSG00000139218.13	1536.39670	1818.03820	-0.24280	2.91370	2.29460	HepG2	PCBP1
SCAF11	ENSG00000139218.13	1241.18510	1611.97200	-0.37710	4.76880	3.82730	HepG2	PPIL4
SCAF11	ENSG00000139218.13	2066.87580	1750.83920	0.23930	2.61570	1.86110	HepG2	PRPF4
SCAF11	ENSG00000139218.13	2562.63280	2190.44730	0.22630	3.20960	2.58150	HepG2	PUM1
SCAF11	ENSG00000139218.13	2444.60620	2003.59950	0.28690	2.95870	2.31670	HepG2	QKI
SCAF11	ENSG00000139218.13	2310.78550	1818.32740	0.34570	3.39760	2.65670	HepG2	RBM25
SCAF11	ENSG00000139218.13	1512.40460	1995.08540	-0.39960	3.03350	1.99490	HepG2	RBM27
SCAF11	ENSG00000139218.13	1276.49360	1922.14350	-0.59050	3.90900	2.78880	HepG2	RPS10
SCAF11	ENSG00000139218.13	1078.05780	1609.49850	-0.57820	12.54110	11.31840	HepG2	SAFB2
SCAF11	ENSG00000139218.13	2261.03930	1926.07090	0.23120	2.29180	1.74680	HepG2	SF3B4
SCAF11	ENSG00000139218.13	1521.74980	1876.97850	-0.30270	5.08180	4.25370	HepG2	SMN1
SCAF11	ENSG00000139218.13	2405.10970	3027.09870	-0.33180	6.07010	5.40690	HepG2	SRFBP1
SCAF11	ENSG00000139218.13	3260.55400	2010.33930	0.69760	22.67820	21.60530	HepG2	SRSF1
SCAF11	ENSG00000139218.13	2372.18150	2037.33490	0.21940	2.28610	1.71020	HepG2	SRSF5
SCAF11	ENSG00000139218.13	2281.92730	1635.46490	0.48050	7.79170	6.95020	HepG2	SRSF9
SCAF11	ENSG00000139218.13	3356.55220	2628.25230	0.35280	6.97970	6.23610	HepG2	SSB
SCAF11	ENSG00000139218.13	2693.62550	2317.10740	0.21710	2.72510	2.10720	HepG2	SUCLG1
SCAF11	ENSG00000139218.13	2021.22090	3010.09750	-0.57460	7.62830	6.50080	HepG2	TARDBP
SCAF11	ENSG00000139218.13	1212.71490	1756.24710	-0.53430	7.95100	7.18310	HepG2	TIAL1
SCAF11	ENSG00000139218.13	1273.62850	1771.81980	-0.47630	8.93020	8.00700	HepG2	TRIM56
SCAF11	ENSG00000139218.13	3471.45690	2115.15180	0.71470	8.68700	7.56720	HepG2	U2AF1
SCAF11	ENSG00000139218.13	688.04190	952.42520	-0.46910	3.31520	2.48610	HepG2	UCHL5
SCAF11	ENSG00000139218.13	2211.75520	2678.92890	-0.27650	4.26760	3.43050	HepG2	UPF1
SCAF11	ENSG00000139218.13	925.22590	1476.47520	-0.67430	4.27910	3.01630	HepG2	UPF2
SCAF11	ENSG00000139218.13	955.10750	1587.02870	-0.73260	7.99800	6.77640	HepG2	XRN2
SCAF11	ENSG00000139218.13	2662.00430	2946.31070	-0.14640	1.86430	1.39100	HepG2	ZNF622
SCAF11	ENSG00000139218.13	2827.42630	2211.88460	0.35410	3.54890	2.19530	K562	AARS
SCAF11	ENSG00000139218.13	2856.51450	3507.10070	-0.29600	4.80250	4.08960	K562	AGGF1
SCAF11	ENSG00000139218.13	3182.66840	3853.74190	-0.27600	2.37460	1.47510	K562	AKAP8
SCAF11	ENSG00000139218.13	2820.57970	3649.28950	-0.37160	3.87550	3.10070	K562	AKAP8L
SCAF11	ENSG00000139218.13	3461.26880	4191.20310	-0.27610	2.90740	1.69510	K562	CCDC124
SCAF11	ENSG00000139218.13	1532.68700	1909.17870	-0.31690	3.55730	2.33740	K562	CSTF2
SCAF11	ENSG00000139218.13	1980.14850	2528.11270	-0.35250	3.70750	2.47950	K562	DDX3X
SCAF11	ENSG00000139218.13	5032.92660	5668.56300	-0.17160	2.24190	1.64550	K562	DDX47
SCAF11	ENSG00000139218.13	2032.12000	2563.21020	-0.33500	4.34470	2.58880	K562	DDX6
SCAF11	ENSG00000139218.13	2840.66280	3477.08860	-0.29170	4.08050	3.23300	K562	EIF2S2
SCAF11	ENSG00000139218.13	1657.02600	2305.63790	-0.47660	7.37440	5.03050	K562	EWSR1
SCAF11	ENSG00000139218.13	2430.08570	4062.89860	-0.74150	7.62010	6.14550	K562	FIP1L1
SCAF11	ENSG00000139218.13	2645.58860	2100.91070	0.33250	2.48420	1.42420	K562	FKBP4
SCAF11	ENSG00000139218.13	3780.32530	2747.57610	0.46030	3.31830	2.53080	K562	G3BP2
SCAF11	ENSG00000139218.13	3392.85930	4030.73740	-0.24850	2.14100	1.43930	K562	GPKOW
SCAF11	ENSG00000139218.13	2943.21660	4633.53300	-0.65470	12.45660	10.83280	K562	GRSF1
SCAF11	ENSG00000139218.13	1909.67670	2420.69170	-0.34210	3.41580	2.76310	K562	HNRNPC
SCAF11	ENSG00000139218.13	2427.29860	3341.55660	-0.46120	2.83320	1.89060	K562	HNRNPM
SCAF11	ENSG00000139218.13	2739.31790	3314.56710	-0.27500	3.39900	2.41070	K562	HNRNPU
SCAF11	ENSG00000139218.13	3575.88640	5508.75820	-0.62340	5.08670	4.02070	K562	HSPD1
SCAF11	ENSG00000139218.13	3076.00310	3707.23450	-0.26930	2.48000	1.47990	K562	MAK16
SCAF11	ENSG00000139218.13	3024.33810	3934.46890	-0.37950	4.34620	3.23140	K562	METAP2
SCAF11	ENSG00000139218.13	3231.31480	3644.54100	-0.17360	2.14820	1.43020	K562	MTPAP
SCAF11	ENSG00000139218.13	2523.02490	3271.53530	-0.37480	4.65390	2.86270	K562	PCBP1
SCAF11	ENSG00000139218.13	1837.11570	2363.19570	-0.36330	2.98580	1.49800	K562	PHF6
SCAF11	ENSG00000139218.13	2652.24190	4611.85390	-0.79810	7.73490	6.21410	K562	PPIG
SCAF11	ENSG00000139218.13	1481.07490	2170.34910	-0.55130	7.08710	5.52310	K562	PSIP1
SCAF11	ENSG00000139218.13	5746.40200	6898.60340	-0.26360	3.56490	2.47580	K562	PUM2
SCAF11	ENSG00000139218.13	2518.01010	3118.79930	-0.30870	2.68020	1.85340	K562	RBM22
SCAF11	ENSG00000139218.13	1619.04110	1979.89910	-0.29030	2.72550	1.74240	K562	RCC2
SCAF11	ENSG00000139218.13	2013.05250	2455.70840	-0.28680	4.09710	2.18680	K562	RPS10
SCAF11	ENSG00000139218.13	1503.70970	1876.91870	-0.31980	2.58370	1.60310	K562	SRFBP1
SCAF11	ENSG00000139218.13	1984.75620	2476.92650	-0.31960	2.45920	1.47530	K562	SRSF4
SCAF11	ENSG00000139218.13	2412.32040	3010.54830	-0.31960	2.53380	1.53700	K562	SRSF5
SCAF11	ENSG00000139218.13	2351.76650	3226.65270	-0.45630	4.78370	3.84450	K562	TARDBP
SCAF11	ENSG00000139218.13	2389.89840	3112.41370	-0.38110	4.61350	3.51600	K562	TIA1
SCAF11	ENSG00000139218.13	1613.39050	2087.54480	-0.37170	2.79760	1.85500	K562	TIAL1
SCAF11	ENSG00000139218.13	1709.08590	2217.45260	-0.37570	3.63260	2.52220	K562	TRIM56
SCAF11	ENSG00000139218.13	3500.79010	2664.10140	0.39390	3.10820	1.93920	K562	U2AF1
SCAF11	ENSG00000139218.13	3288.35860	2751.17280	0.25720	2.63010	1.84630	K562	U2AF2
SCAF11	ENSG00000139218.13	3812.57210	4293.71400	-0.17150	2.23370	1.58400	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SCAF11 is not available on ENCORE database.

8 RBPs can affect the splicing of SCAF11 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SCAF11	ENSG00000139218.13	chr12	-	46367972	46369517			46357889	46357971	46384135	46384348	0.11500	0.00116	0.01603	included	HepG2	U2AF2
SE	SCAF11	ENSG00000139218.13	chr12	-	46367972	46369517			46357889	46357971	46384135	46384348	0.07400	0.00003	0.00054	included	K562	AQR
SE	SCAF11	ENSG00000139218.13	chr12	-	46318510	46318857			46316707	46316937	46319924	46322642	-0.08900	0.00000	0.00001	excluded	K562	AQR
SE	SCAF11	ENSG00000139218.13	chr12	-	46319924	46320074			46318510	46318857	46322435	46322642	-0.09500	0.00006	0.00578	excluded	HepG2	SFPQ
SE	SCAF11	ENSG00000139218.13	chr12	-	46367972	46369517			46357889	46357971	46384135	46384348	0.20500	0.00000	0.00003	included	K562	EFTUD2
SE	SCAF11	ENSG00000139218.13	chr12	-	46367972	46369517			46357889	46357971	46384135	46384348	0.40700	0.00000	0.00000	included	K562	U2AF1
SE	SCAF11	ENSG00000139218.13	chr12	-	46319924	46320074			46318729	46318857	46322435	46322642	0.06900	0.00026	0.03472	included	HepG2	LARP4
SE	SCAF11	ENSG00000139218.13	chr12	-	46367972	46369517			46357889	46357971	46384135	46384348	0.29200	0.00023	0.00580	included	K562	U2AF2
A3SS	SCAF11	ENSG00000139218.13	chr12	-	46326913	46327035			46326913	46327015	46327958	46328068	0.06000	0.00002	0.00023	longer	K562	AQR
A3SS	SCAF11	ENSG00000139218.13	chr12	-	46315830	46316043			46315830	46315977	46316245	46316365	0.09900	0.00002	0.00017	longer	K562	AQR
A3SS	SCAF11	ENSG00000139218.13	chr12	-	46316245	46316407			46316245	46316365	46316718	46316937	0.06000	0.00017	0.00139	longer	K562	AQR
A3SS	SCAF11	ENSG00000139218.13	chr12	-	46328229	46328343			46328229	46328288	46339031	46339096	0.05600	0.00000	0.00002	longer	K562	AQR
A3SS	SCAF11	ENSG00000139218.13	chr12	-	46339031	46339189			46339031	46339096	46342219	46342320	0.06800	0.00000	0.00004	longer	K562	AQR
A5SS	SCAF11	ENSG00000139218.13	chr12	-	46319924	46322642			46322435	46322642	46318510	46318857	0.07000	0.00026	0.08606	longer	HepG2	LARP4
A5SS	SCAF11	ENSG00000139218.13	chr12	-	46319924	46322642			46322435	46322642	46318510	46318857	-0.09700	0.00006	0.01396	shorter	HepG2	SFPQ
RI	SCAF11	ENSG00000139218.13	chr12	-	46319924	46322642			46319924	46320074	46322435	46322642	-0.06500	0.01100	0.06723	excluded	HepG2	SF3B4
RI	SCAF11	ENSG00000139218.13	chr12	-	46319924	46322642			46319924	46320074	46322435	46322642	-0.08600	0.00217	0.03419	excluded	HepG2	SRSF9
MXE	SCAF11	ENSG00000139218.13	chr12	-	46355482	46355640	46357889	46357971	46345432	46345510	46367972	46369517	0.09800	0.00424	0.03130	1included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SCAF11

General Information

Functions

Localization

Domains (AlphaFold: SCAF11)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SCAF11 is not avaliable on ENCORE database.

35 proteins are bound to SCAF11 RNA:

eCLIP assay for SCAF11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SCAF11 is not available on ENCORE database.

75 RBPs can affect the gene expression of SCAF11 :

The Knockdown/knockout RNA-Seq assay for SCAF11 is not available on ENCORE database.

8 RBPs can affect the splicing of SCAF11 :

The Knockdown/knockout RNA-Seq assay for SCAF11 is not avaliable on ENCORE database.