RTN3

General Information

Gene Name       : RTN3
Gene ID             : ENSG00000133318.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RTN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RTN3ENSG00000133318.1354.9743.6649.31ENCSR000AEF
HepG2RTN3ENSG00000133318.1334.4646.4940.48ENCSR985KAT
K562RTN3ENSG00000133318.13102.53113.66108.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RTN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RTN3 RNA is bound by 37 proteins.  







eCLIP assay for RTN3 is not avaliable on ENCORE database.





37 proteins are bound to RTN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116352560463525662+3'-UTR,CDS,intron-Proximal3.565483.76069K562U2AF1
chr116352115163521176+3'-UTR,CDS,intron-Distal4.8050530.51887K562SND1
chr116352625463526325+3'-UTR3.888855.39448HepG2AKAP1
chr116352060263520611+3'-UTR,CDS,intron-Distal,intron-Proximal4.2162734.27916K562SND1
chr116352622463526281+3'-UTR3.3740123.17382K562UPF1
chr116352054063520562+3'-UTR,CDS,intron-Distal,intron-Proximal4.3613139.77916K562SND1
chr116352631563526399+3'-UTR3.4015753.58675K562FAM120A
chr116352594463525997+3'-UTR4.672065.67997HepG2UPF1
chr116352629963526393+3'-UTR3.915729.12996K562IGF2BP2
chr116352646663526486+3'-UTR3.515418.31066K562FAM120A
chr116352609863526141+3'-UTR3.357363.67576K562IGF2BP2
chr116352669563526730+3'-UTR3.6342111.89073K562FAM120A
chr116352614163526204+3'-UTR5.021427.92903HepG2UPF1
chr116352618063526224+3'-UTR4.1251260.13123K562FAM120A
chr116352719563527283+3'-UTR3.188994.58130K562ZC3H11A
chr116352054063520579+3'-UTR,CDS,intron-Distal,intron-Proximal3.681986.91496K562IGF2BP1
chr116352605463526086+3'-UTR4.3082317.88240K562FAM120A
chr116352626563526409+3'-UTR3.054878.35730K562PCBP1
chr116352613063526180+3'-UTR3.5862240.91052K562FAM120A
chr116352628163526411+3'-UTR3.7716557.93562K562UPF1
chr116352691363526987+3'-UTR3.845498.29347HepG2SUB1
chr116352581863525873+3'-UTR,CDS4.840995.29045K562IGF2BP1
chr116352580763525865+3'-UTR,CDS3.0738811.03860K562FAM120A
chr116352725563527333+3'-UTR3.5791932.72180K562PUM2
chr116352604763526083+3'-UTR4.424464.77152K562IGF2BP1
chr116352695363526979+3'-UTR3.149489.58084K562FAM120A
chr116352113363521151+3'-UTR,CDS,intron-Distal,intron-Proximal4.4876234.42267K562SND1
chr116352560363525671+3'-UTR,CDS,intron-Proximal4.1699510.51303K562U2AF2
chr116352612763526217+3'-UTR3.0932056.10342K562UPF1
chr116352572263525783+3'-UTR,CDS3.284765.27196HepG2SUB1
chr116352622963526282+3'-UTR5.8875642.32719K562FAM120A
chr116352117663521180+3'-UTR,CDS,intron-Distal4.0817612.97045K562SND1
chr116352708963527148+3'-UTR3.0203110.10102K562PABPC4
chr116352608663526130+3'-UTR4.3312227.64532K562FAM120A
chr116352056263520602+3'-UTR,CDS,intron-Distal3.9988742.16599K562SND1
chr116352628263526315+3'-UTR3.7395640.75528K562FAM120A
chr116352632563526375+3'-UTR4.372323.34655HepG2AKAP1
chr116352648563526530+3'-UTR3.2470514.64254K562UPF1
chr116352720963527286+3'-UTR3.1799011.88237K562PABPC4
chr116352625263526381+3'-UTR5.6364934.08938HepG2UPF1
chr116344903763449136+5'-UTR,CDS4.336087.97328HepG2PCBP1
chr116344906663449198+5'-UTR,CDS3.0918021.47071K562GEMIN5
chr116344897163449057+5'-UTR3.0356818.87749K562DDX3X
chr116344904263449074+5'-UTR4.356454.74917HepG2PCBP2
chr116344897763449038+5'-UTR3.699495.70592K562SRSF1
chr116344903963449126+5'-UTR,CDS3.472624.59083K562EIF3G
chr116344903663449149+5'-UTR,CDS3.6386923.01809K562PCBP1
chr116351746263517532+CDS,intron-Proximal4.1605720.49693K562RPS3
chr116348652363486643+CDS,intron-Distal4.331474.48810K562SAFB2
chr116352007463520109+CDS,intron-Distal4.5396944.41741K562SND1
chr116348838363488439+CDS,intron-Distal3.551157.19516K562RBM15
chr116348645263486502+CDS,intron-Distal,intron-Proximal4.256277.70265K562RBM15
chr116352007463520096+CDS,intron-Distal4.5513811.65697K562IGF2BP1
chr116351999563520089+CDS,intron-Distal3.421483.48584HepG2SND1
chr116344914963449202+CDS3.375115.34452K562PCBP1
chr116348831363488359+CDS,intron-Distal3.193853.04831K562RBM15
chr116352010963520117+CDS,intron-Distal4.6156139.00647K562SND1
chr116352011363520118+CDS,intron-Distal,intron-Proximal4.390659.62953K562IGF2BP1
chr116348656563486640+CDS,intron-Distal4.057145.96588K562ZNF622
chr116344922163449246+CDS4.126943.18462K562IGF2BP2
chr116348686363486902+CDS,intron-Distal3.255783.69481K562UCHL5
chr116348763963487762+CDS,intron-Distal4.0974710.20505K562RBM15
chr116348684363486899+CDS,intron-Distal3.515334.24159K562RBM15
chr116348777563487804+CDS,intron-Distal4.119903.73926K562RBM15
chr116351747963517524+CDS3.557759.11098K562SND1
chr116351999163520074+CDS,intron-Distal3.085353.80432K562IGF2BP1
chr116351766863517686+CDS,intron-Proximal3.527313.52230K562AQR
chr116352009663520113+CDS,intron-Distal4.8379014.67452K562IGF2BP1
chr116352002163520099+CDS,intron-Distal3.778536.77713K562IGF2BP2
chr116344914463449246+CDS3.4494914.16378K562RPS3
chr116348776863487828+CDS,intron-Distal3.085853.70975K562UCHL5
chr116351762763517670+CDS4.3488715.81997K562SND1
chr116348654263486583+CDS,intron-Distal4.552065.01312K562UCHL5
chr116348640863486452+CDS,intron-Distal,intron-Proximal5.184548.98006K562RBM15
chr116351997863520074+CDS,intron-Distal,intron-Proximal5.0086864.12456K562SND1
chr116352359463523642+CDS,intron-Distal4.4426928.35001K562SND1
chr116351764463517661+CDS3.152896.77366K562YBX3
chr116352358263523594+CDS,intron-Distal,intron-Proximal4.7790121.43292K562SND1
chr116348740563487473+CDS,intron-Distal4.789116.29310K562ZNF622
chr116344914463449236+CDS4.4597216.49042HepG2RPS3
chr116345830263458378+intron-Distal3.303354.09454K562HNRNPL
chr116344929563449352+intron-Distal,intron-Proximal4.690868.13161K562EFTUD2
chr116346606163466108+intron-Distal3.036263.14650K562TIA1
chr116345502863455078+intron-Distal4.403543.98636K562LIN28B
chr116350302363503113+intron-Distal4.983375.81225K562PTBP1
chr116346685263467033+intron-Distal3.731755.97215K562MATR3
chr116347557563475691+intron-Distal3.548886.09178HepG2QKI
chr116344943163449499+intron-Distal3.406333.74491K562CSTF2T
chr116345860363458680+intron-Distal3.954624.20638K562HNRNPC
chr116346600363466043+intron-Distal3.944533.09122HepG2PTBP1
chr116344943763449504+intron-Distal4.491414.06667K562GTF2F1
chr116346598863466052+intron-Distal4.295239.23478K562PTBP1
chr116348853563488602+intron-Distal,intron-Proximal3.970036.41553K562KHSRP
chr116351767163517754+intron-Proximal3.949075.25185K562PRPF8
chr116351768663517732+intron-Proximal4.853345.17615K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RTN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RTN3 is not available on ENCORE database.

  • 76 RBPs can affect the levels of RTN3.  








The Knockdown/knockout RNA-Seq assay for RTN3 is not available on ENCORE database.





76 RBPs can affect the gene expression of RTN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RTN3ENSG00000133318.91630.584702717.98730-0.737108.183107.32050HepG2AKAP1
RTN3ENSG00000133318.92750.821002348.176400.228202.975502.26750HepG2AUH
RTN3ENSG00000133318.9821.274701584.04540-0.9477016.1562014.88250HepG2BOP1
RTN3ENSG00000133318.91702.903402044.00800-0.263402.539801.79920HepG2CALR
RTN3ENSG00000133318.91150.186402136.59400-0.8934013.7448012.17120HepG2CIRBP
RTN3ENSG00000133318.91418.857001700.21770-0.261003.544702.80730HepG2CKAP4
RTN3ENSG00000133318.91291.643501641.77020-0.346003.018202.31210HepG2DDX21
RTN3ENSG00000133318.93262.113302603.551500.325202.368701.78490HepG2DDX3X
RTN3ENSG00000133318.91186.660001584.95750-0.417507.856006.82840HepG2DNAJC2
RTN3ENSG00000133318.91765.218102150.00060-0.284501.829301.33440HepG2EIF2S1
RTN3ENSG00000133318.91001.498201267.47270-0.339802.190801.37770HepG2EIF3D
RTN3ENSG00000133318.91786.225402375.91890-0.411602.983602.31940HepG2EIF4A3
RTN3ENSG00000133318.91765.248002417.77830-0.453808.855107.51790HepG2EIF4G1
RTN3ENSG00000133318.91755.293402316.07810-0.400003.795902.85230HepG2EIF4G2
RTN3ENSG00000133318.93095.732602695.885500.199402.674002.08110HepG2ETF1
RTN3ENSG00000133318.91474.860901783.86850-0.274403.545902.86800HepG2HNRNPU
RTN3ENSG00000133318.91706.777002398.29640-0.490704.524203.69040HepG2MAGOH
RTN3ENSG00000133318.91881.420902411.67780-0.358202.419901.82730HepG2MATR3
RTN3ENSG00000133318.91781.573802430.12810-0.447906.766005.57850HepG2NOL12
RTN3ENSG00000133318.9696.682701344.41070-0.948406.337504.65020HepG2NONO
RTN3ENSG00000133318.91516.318501765.73560-0.219702.242001.47160HepG2PARN
RTN3ENSG00000133318.91026.538301951.08060-0.926508.841307.10750HepG2PCBP2
RTN3ENSG00000133318.91342.487501591.06970-0.245102.307601.62750HepG2PPIL4
RTN3ENSG00000133318.92151.259101764.917500.285503.673802.79460HepG2PRPF4
RTN3ENSG00000133318.91497.615002315.80260-0.6288015.5822014.48670HepG2PTBP1
RTN3ENSG00000133318.93034.322002460.735900.302203.409702.66720HepG2PUM2
RTN3ENSG00000133318.91357.433201732.08050-0.351605.547004.73020HepG2PUS1
RTN3ENSG00000133318.91750.585302507.98810-0.518708.811607.79390HepG2QKI
RTN3ENSG00000133318.9812.906501882.73690-1.2117011.083809.74130HepG2RAVER1
RTN3ENSG00000133318.91231.267601643.98760-0.417102.630201.59880HepG2RCC2
RTN3ENSG00000133318.92208.848802577.23350-0.222502.578302.05320HepG2NELFE
RTN3ENSG00000133318.91484.824002400.40170-0.6930018.8966017.52540HepG2RECQL
RTN3ENSG00000133318.91430.923301788.06010-0.321402.727502.04760HepG2RPLP0
RTN3ENSG00000133318.9859.925701233.32980-0.520305.738204.88970HepG2RPS19
RTN3ENSG00000133318.91240.749801867.19990-0.589706.370205.18650HepG2RPS2
RTN3ENSG00000133318.91273.960002048.55900-0.685305.028402.95370HepG2RTF1
RTN3ENSG00000133318.91831.971901588.619100.205502.347701.74630HepG2SAFB2
RTN3ENSG00000133318.91738.885502410.97930-0.471509.368608.37910HepG2SF3B4
RTN3ENSG00000133318.91587.687901852.60720-0.222602.946702.28550HepG2SMN1
RTN3ENSG00000133318.92031.126802516.56910-0.309204.794804.21590HepG2SRSF1
RTN3ENSG00000133318.92597.097602047.387600.343006.148305.38290HepG2SRSF9
RTN3ENSG00000133318.92032.660402604.85190-0.357807.099006.18290HepG2SUCLG1
RTN3ENSG00000133318.91862.664001457.708600.353602.526301.87660HepG2SUPV3L1
RTN3ENSG00000133318.91797.056402262.06980-0.332004.240103.56810HepG2TAF15
RTN3ENSG00000133318.91065.092801733.39530-0.7026012.7859011.84630HepG2TIAL1
RTN3ENSG00000133318.92417.447001856.264900.381003.163302.49460HepG2U2AF1
RTN3ENSG00000133318.92269.532901741.744000.381807.742506.71090HepG2ZC3H8
RTN3ENSG00000133318.92241.099501926.048900.218503.158602.58650HepG2ZNF622
RTN3ENSG00000133318.93335.403703991.28630-0.259003.321301.64380K562AKAP1
RTN3ENSG00000133318.94035.420705135.26530-0.347703.485602.03640K562CIRBP
RTN3ENSG00000133318.95057.362504084.117000.308303.621602.72540K562CPSF6
RTN3ENSG00000133318.94480.842106127.58340-0.4515011.4954010.26680K562DDX47
RTN3ENSG00000133318.93747.146704442.56170-0.245603.364702.01730K562EIF2S1
RTN3ENSG00000133318.97157.013204396.493000.7029023.5278021.77030K562EIF2S2
RTN3ENSG00000133318.91696.262102391.91380-0.495802.843601.82380K562EIF3A
RTN3ENSG00000133318.92548.393103828.88370-0.5873012.9073011.14910K562EIF3G
RTN3ENSG00000133318.93508.063204225.41200-0.268402.262801.51830K562EIF4A3
RTN3ENSG00000133318.96711.023607646.77870-0.188302.345701.47600K562EIF4G2
RTN3ENSG00000133318.95304.825004155.512800.352203.517902.55030K562FMR1
RTN3ENSG00000133318.93783.524604394.26380-0.215902.541201.95580K562FXR1
RTN3ENSG00000133318.96019.527004373.279400.460803.378002.58260K562G3BP2
RTN3ENSG00000133318.93227.991804084.31020-0.339502.675101.55160K562GLRX3
RTN3ENSG00000133318.99332.146505825.132400.679802.807301.57690K562HNRNPA2B1
RTN3ENSG00000133318.99613.314206198.859100.6329010.633809.10100K562HSPD1
RTN3ENSG00000133318.94199.096603253.767000.367903.943802.22820K562LARP7
RTN3ENSG00000133318.913397.5735010845.265200.304803.283802.08460K562MAK16
RTN3ENSG00000133318.95389.030604771.077500.175603.692802.84420K562NSUN2
RTN3ENSG00000133318.93085.927904480.54280-0.538008.092106.38990K562PCBP2
RTN3ENSG00000133318.94249.431503280.665300.373204.106002.31250K562PHF6
RTN3ENSG00000133318.910077.454506053.278200.735203.304401.65720K562PPP1R8
RTN3ENSG00000133318.93361.339204892.31790-0.541509.369608.19660K562PTBP1
RTN3ENSG00000133318.910586.598908874.552300.254402.934901.83360K562PUM1
RTN3ENSG00000133318.98886.9856010587.80340-0.252601.930201.46100K562PUS1
RTN3ENSG00000133318.93103.562204691.54400-0.596108.919607.27470K562RBM22
RTN3ENSG00000133318.93697.262304937.00710-0.417204.229602.84580K562NELFE
RTN3ENSG00000133318.92283.780503059.88770-0.422103.382002.47720K562RPS19
RTN3ENSG00000133318.94229.886706284.42680-0.571203.578202.42470K562RPS3
RTN3ENSG00000133318.92107.407602605.73150-0.306202.625401.63470K562SRFBP1
RTN3ENSG00000133318.94180.491204823.43440-0.206403.550702.50690K562SRPK2
RTN3ENSG00000133318.93997.368304796.02140-0.262802.653901.96050K562SRSF1
RTN3ENSG00000133318.911685.880706397.943300.869004.423202.45440K562SUPT6H
RTN3ENSG00000133318.93871.455804854.06160-0.326302.838002.12210K562TARDBP
RTN3ENSG00000133318.93700.302503078.493300.265302.323301.46770K562TRIM56
RTN3ENSG00000133318.94068.004803078.287600.402103.903702.67420K562UCHL5
RTN3ENSG00000133318.95976.477905058.882000.240404.206703.33920K562UPF1
RTN3ENSG00000133318.95154.942004328.713500.251902.430001.60780K562WDR3
RTN3ENSG00000133318.910719.724906294.532700.768003.352801.55590K562YTHDC2
RTN3ENSG00000133318.98557.916107013.533200.287002.831701.95690K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RTN3 is not available on ENCORE database.





14 RBPs can affect the splicing of RTN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERTN3ENSG00000133318.9chr11+635205406352061063519978635201176352113363521180-0.059000.000000.00000excludedK562SF3B4
SERTN3ENSG00000133318.9chr11+635205406352061063519978635201176352113363521180-0.067000.000200.00513excludedHepG2U2AF1
SERTN3ENSG00000133318.9chr11+635211336352118063517462635176706352358363523642-0.051000.000000.00000excludedK562AKAP8L
SERTN3ENSG00000133318.9chr11+635205406352061063519978635201176352113363521180-0.095000.000000.00000excludedHepG2U2AF2
SERTN3ENSG00000133318.9chr11+635235836352364263521133635211806352562763527337-0.072000.000000.00000excludedK562AQR
SERTN3ENSG00000133318.9chr11+6348617363488504634489546344925063517462635176700.065000.002180.07101includedK562FXR1
SERTN3ENSG00000133318.9chr11+635211336352118063517462635176706352358363523642-0.109000.000000.00000excludedK562PUS1
SERTN3ENSG00000133318.9chr11+635211336352118063517462635176706352358363523642-0.063000.000000.00000excludedK562UTP18
SERTN3ENSG00000133318.9chr11+635205406352061063519978635201176352113363521180-0.058000.000000.00000excludedK562U2AF2
SERTN3ENSG00000133318.9chr11+635211336352118063517462635176706352358363523642-0.056000.000000.00000excludedK562RBM15
SERTN3ENSG00000133318.9chr11+635211336352118063517462635176706352358363523642-0.094000.000000.00000excludedK562AGGF1
SERTN3ENSG00000133318.9chr11+6348617363488504634489546344925063517462635176700.137000.000560.09666includedK562SAFB
SERTN3ENSG00000133318.9chr11+6348617363488504634489546344925063517462635176700.168000.000000.00039includedK562PTBP1
MXERTN3ENSG00000133318.9chr11+63519995635201176352054063520610635174626351767063521133635211800.053000.000000.000001includedK562U2AF2
MXERTN3ENSG00000133318.9chr11+63517462635176706352113363521180634489716344925063523583635236420.055000.002830.069051includedK562EFTUD2
MXERTN3ENSG00000133318.9chr11+63519978635201176352054063520610635174626351767063521133635211800.364000.000010.000151includedHepG2U2AF2
MXERTN3ENSG00000133318.9chr11+63519978635201176352054063520610635174626351767063521133635211800.074000.000390.024121includedK562SAFB
MXERTN3ENSG00000133318.9chr11+63519978635201176352054063520610635174626351767063521133635211800.167000.002900.060741includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RTN3 is not avaliable on ENCORE database.