RCCD1

General Information

Gene Name       : RCCD1
Gene ID             : ENSG00000166965.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RCCD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RCCD1ENSG00000166965.126.737.867.29ENCSR000AEF
HepG2RCCD1ENSG00000166965.1214.3311.8513.09ENCSR985KAT
K562RCCD1ENSG00000166965.1216.0916.6216.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RCCD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RCCD1 RNA is bound by 23 proteins.  







eCLIP assay for RCCD1 is not avaliable on ENCORE database.





23 proteins are bound to RCCD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr159150353691503614+3'-UTR,CDS,intron-Proximal4.177993.64950HepG2BUD13
chr159150313691503230+3'-UTR,CDS,intron-Proximal3.574499.72918K562UCHL5
chr159150490691504996+3'-UTR,CDS3.046036.86379K562ZNF622
chr159150504791505171+3'-UTR,intron-Proximal3.164035.30479K562HNRNPK
chr159150424591504298+3'-UTR,CDS,intron-Proximal3.392828.25232K562BUD13
chr159150357091503765+3'-UTR,CDS,intron-Proximal3.167065.22569HepG2GRWD1
chr159150425391504283+3'-UTR,CDS,intron-Proximal3.223464.64824K562PRPF8
chr159150583191505895+3'-UTR4.506903.53404K562HNRNPM
chr159150507291505156+3'-UTR,intron-Proximal4.439994.33022HepG2HNRNPK
chr159150489991504995+3'-UTR,CDS3.754045.11891HepG2GRWD1
chr159150312591503228+3'-UTR,CDS,intron-Proximal3.298186.18146K562TARDBP
chr159150314391503227+3'-UTR,CDS3.558665.14253HepG2GRWD1
chr159150505791505149+3'-UTR,intron-Proximal3.232487.78505K562DDX55
chr159150314191503192+3'-UTR,CDS3.858993.24706K562NOLC1
chr159150372791503733+3'-UTR,CDS,intron-Proximal5.6530717.39019K562AQR
chr159150424391504292+3'-UTR,CDS,intron-Proximal3.127183.59349K562U2AF1
chr159150508191505167+3'-UTR,intron-Proximal3.249053.42451K562FUS
chr159150313391503226+3'-UTR,CDS3.459467.66871HepG2BCLAF1
chr159150363291503726+3'-UTR,CDS3.578995.58370HepG2PPIG
chr159150313491503209+3'-UTR,CDS3.457759.74437K562BUD13
chr159150369991503743+3'-UTR,CDS,intron-Proximal3.659256.18341HepG2PRPF8
chr159150545591505511+3'-UTR4.120223.61393K562CPSF6
chr159150312991503213+3'-UTR,CDS,intron-Proximal3.280355.81979K562DDX6
chr159150313491503223+3'-UTR,CDS4.1906510.43162HepG2PPIG
chr159150424391504293+3'-UTR,CDS,intron-Proximal3.579374.35314HepG2U2AF2
chr159150355791503606+3'-UTR,CDS,intron-Proximal3.535855.76403K562UCHL5
chr159150424391504298+3'-UTR,CDS,intron-Proximal3.937326.43870K562U2AF2
chr159150491691504981+3'-UTR,CDS4.378834.15208K562RBM15
chr159150312991503225+3'-UTR,CDS,intron-Proximal4.5754628.57789K562DDX24
chr159150419991504287+3'-UTR,CDS,intron-Proximal3.789017.62845K562SF3B4
chr159149995591500087+5'-UTR,CDS,intron-Distal3.862963.89619HepG2SRSF1
chr159149815491498181+5'-UTR,intron-Proximal3.912703.20743HepG2PPIG
chr159150086191500944+5'-UTR,CDS,intron-Distal4.551599.66045K562UCHL5
chr159150084791500954+5'-UTR,CDS,intron-Distal4.122578.81096HepG2PPIG
chr159149983591499877+5'-UTR,intron-Distal,intron-Proximal3.894396.08151K562BUD13
chr159149812191498188+5'-UTR,intron-Proximal4.641203.45994HepG2NCBP2
chr159150031191500383+CDS,intron-Distal,intron-Proximal3.3854111.49798K562AQR
chr159150052491500593+CDS,intron-Distal3.137314.83973K562ZNF622
chr159150049291500624+CDS,intron-Distal3.361433.41665HepG2GRWD1
chr159150000791500054+CDS,intron-Distal4.784954.48994K562RBM15
chr159150083691500905+CDS,intron-Distal4.355334.53461K562SRSF1
chr159150012991500153+CDS,intron-Distal,intron-Proximal3.693594.63311K562AQR
chr159150032191500403+CDS,intron-Distal,intron-Proximal3.361536.61270K562PRPF8
chr159150462891504688+intron-Distal3.143283.09090K562GRWD1
chr159149961191499677+intron-Distal4.069204.69223K562SF3B4
chr159150430391504353+intron-Proximal4.290757.98725K562BUD13
chr159150434691504355+intron-Proximal4.094593.53690K562ZNF622
chr159150374391503773+intron-Proximal3.378234.50321HepG2PRPF8
chr159150373591503770+intron-Proximal6.7528520.63385K562AQR
chr159150430091504379+intron-Proximal3.528924.35477K562UCHL5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RCCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RCCD1 is not available on ENCORE database.

  • 96 RBPs can affect the levels of RCCD1.  








The Knockdown/knockout RNA-Seq assay for RCCD1 is not available on ENCORE database.





96 RBPs can affect the gene expression of RCCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RCCD1ENSG00000166965.8365.40150512.19890-0.487204.507903.76810HepG2ACO1
RCCD1ENSG00000166965.8213.18850336.63430-0.659103.651602.75190HepG2ASCC1
RCCD1ENSG00000166965.8382.01100631.16250-0.724408.665307.56420HepG2AUH
RCCD1ENSG00000166965.8209.64210314.05540-0.583102.906301.98350HepG2BCLAF1
RCCD1ENSG00000166965.8175.18150271.92530-0.634403.266202.62260HepG2BOP1
RCCD1ENSG00000166965.8224.06690364.90820-0.703605.064204.05960HepG2CALR
RCCD1ENSG00000166965.8360.13000512.13580-0.508004.902304.06420HepG2CKAP4
RCCD1ENSG00000166965.8238.15470424.69840-0.834504.530903.54900HepG2CNOT7
RCCD1ENSG00000166965.8394.32200594.10650-0.591306.046905.16670HepG2CELF1
RCCD1ENSG00000166965.8226.32840311.53690-0.461002.243001.43090HepG2DDX24
RCCD1ENSG00000166965.8211.99770389.71880-0.878406.131205.23440HepG2DDX3X
RCCD1ENSG00000166965.8334.67920524.70060-0.648705.155903.42310HepG2DDX47
RCCD1ENSG00000166965.8337.28330490.04800-0.539004.314603.50480HepG2DKC1
RCCD1ENSG00000166965.8244.37070387.31810-0.664403.959102.87520HepG2EEF2
RCCD1ENSG00000166965.8176.83350321.82670-0.863905.284304.48090HepG2EIF2S1
RCCD1ENSG00000166965.8193.27410314.38580-0.701903.920302.85360HepG2EIF3D
RCCD1ENSG00000166965.8495.62190630.22600-0.346602.688801.86040HepG2EIF4G1
RCCD1ENSG00000166965.8463.66420603.71680-0.380802.223701.48810HepG2EIF4G2
RCCD1ENSG00000166965.8505.80720724.63230-0.518705.408504.61630HepG2ETF1
RCCD1ENSG00000166965.8391.98170500.55260-0.352702.044301.32810HepG2EWSR1
RCCD1ENSG00000166965.8327.99080602.97550-0.878405.642304.58150HepG2FIP1L1
RCCD1ENSG00000166965.8378.93770228.602300.729005.103404.04810HepG2FUBP3
RCCD1ENSG00000166965.8185.10930279.91100-0.596603.086202.13660HepG2GEMIN5
RCCD1ENSG00000166965.8399.59390587.08650-0.555005.415004.18280HepG2HNRNPA2B1
RCCD1ENSG00000166965.8269.46240361.19770-0.422701.950501.35690HepG2HNRNPC
RCCD1ENSG00000166965.8447.59370581.91160-0.378603.363302.62670HepG2HNRNPL
RCCD1ENSG00000166965.8231.10650338.35520-0.550002.740602.06770HepG2IGF2BP2
RCCD1ENSG00000166965.8343.27720548.33240-0.675704.264103.22810HepG2LARP4
RCCD1ENSG00000166965.8141.56580329.01180-1.216707.219305.60830HepG2METAP2
RCCD1ENSG00000166965.8226.32680388.25680-0.778603.714002.67410HepG2PABPC1
RCCD1ENSG00000166965.8220.44580351.34010-0.672403.301002.16980HepG2PCBP2
RCCD1ENSG00000166965.8165.92780274.11610-0.724203.648602.73540HepG2PRPF8
RCCD1ENSG00000166965.8377.33930604.67890-0.680306.261205.41280HepG2PUF60
RCCD1ENSG00000166965.8355.06100641.89220-0.8543013.8483012.73370HepG2PUM1
RCCD1ENSG00000166965.8439.48910641.42410-0.545504.868703.99210HepG2PUM2
RCCD1ENSG00000166965.8185.56950339.02260-0.869403.845903.01940HepG2RAVER1
RCCD1ENSG00000166965.8437.22070576.41910-0.398802.879402.00710HepG2RBM15
RCCD1ENSG00000166965.8430.76640605.66410-0.491604.032903.43790HepG2RBM22
RCCD1ENSG00000166965.8311.37210415.66200-0.416802.369301.45930HepG2RBM27
RCCD1ENSG00000166965.8489.95830344.052100.509904.012603.28830HepG2RECQL
RCCD1ENSG00000166965.8194.88540333.07600-0.773203.922202.80030HepG2RPS10
RCCD1ENSG00000166965.8145.03650305.94190-1.076808.851207.82650HepG2RPS19
RCCD1ENSG00000166965.8273.81010383.32090-0.485402.820902.01330HepG2RPS2
RCCD1ENSG00000166965.8216.06760426.71420-0.981806.975705.71770HepG2RPS3A
RCCD1ENSG00000166965.8148.44270271.15450-0.869204.598503.61530HepG2RRP9
RCCD1ENSG00000166965.8426.46570319.535800.416402.996402.33250HepG2SAFB2
RCCD1ENSG00000166965.8204.49300307.01190-0.586202.865301.90820HepG2SERBP1
RCCD1ENSG00000166965.8279.52030372.63260-0.414802.755302.11210HepG2SMN1
RCCD1ENSG00000166965.8306.52710684.08520-1.1582021.5049020.45300HepG2SRFBP1
RCCD1ENSG00000166965.8382.87260597.03100-0.640907.121206.18040HepG2SRSF5
RCCD1ENSG00000166965.8213.43660293.46600-0.459402.411101.88890HepG2SRSF9
RCCD1ENSG00000166965.8398.32090593.96510-0.576406.180305.46990HepG2SSB
RCCD1ENSG00000166965.8543.44490678.98990-0.321302.730502.11230HepG2SUCLG1
RCCD1ENSG00000166965.8196.46490353.76700-0.848505.159304.28110HepG2SUPV3L1
RCCD1ENSG00000166965.8517.71730324.220800.675106.623905.82100HepG2TAF15
RCCD1ENSG00000166965.8419.27060297.930300.492803.275902.37110HepG2TIA1
RCCD1ENSG00000166965.8260.24830348.65010-0.421902.300001.83540HepG2TIAL1
RCCD1ENSG00000166965.8279.58890351.76740-0.331301.803901.32900HepG2TRIM56
RCCD1ENSG00000166965.8430.44680590.74380-0.456703.260002.30420HepG2TUFM
RCCD1ENSG00000166965.8427.60680625.29170-0.548203.107402.22080HepG2UBE2L3
RCCD1ENSG00000166965.8199.60950365.46550-0.872607.645206.73030HepG2UTP3
RCCD1ENSG00000166965.8270.16840379.34170-0.489603.499602.75810HepG2ZC3H8
RCCD1ENSG00000166965.8316.53910416.32100-0.395302.864702.31060HepG2ZNF622
RCCD1ENSG00000166965.81799.007401153.322700.641307.996705.94750K562ABCF1
RCCD1ENSG00000166965.82183.342801743.528500.324404.951604.22960K562AGGF1
RCCD1ENSG00000166965.82216.134601814.233500.288602.464101.84690K562AKAP8L
RCCD1ENSG00000166965.82379.838201903.592300.322004.194503.04670K562ATP5C1
RCCD1ENSG00000166965.81677.153202083.56990-0.313002.970601.74070K562CCDC124
RCCD1ENSG00000166965.81483.763301170.780800.341703.466101.75330K562CEBPZ
RCCD1ENSG00000166965.81058.37530841.122400.331402.644201.87600K562CPSF6
RCCD1ENSG00000166965.81934.160201345.642000.523309.487507.23000K562DDX21
RCCD1ENSG00000166965.8870.707501550.08630-0.832109.666708.53680K562DDX47
RCCD1ENSG00000166965.8385.00270708.83550-0.880605.469404.01860K562EIF3A
RCCD1ENSG00000166965.8588.52240892.44130-0.600702.437901.47350K562EIF3D
RCCD1ENSG00000166965.8451.53760636.58310-0.495504.159003.19180K562EIF3G
RCCD1ENSG00000166965.8705.583601068.22690-0.598306.452305.20660K562EIF4A3
RCCD1ENSG00000166965.81096.51400829.096400.403203.275502.34920K562FIP1L1
RCCD1ENSG00000166965.8413.715901110.91460-1.4250039.4758037.34820K562FXR1
RCCD1ENSG00000166965.8545.13920857.89130-0.654204.717203.73770K562G3BP2
RCCD1ENSG00000166965.8710.17530969.04610-0.448403.989003.28810K562HNRNPC
RCCD1ENSG00000166965.81256.67410865.498200.537905.946004.19140K562HNRNPF
RCCD1ENSG00000166965.82409.862201925.309500.323803.402402.47580K562KIF1C
RCCD1ENSG00000166965.8720.15830938.80990-0.382502.898901.47250K562LARP7
RCCD1ENSG00000166965.8798.399701149.32760-0.525604.149803.11530K562MAGOH
RCCD1ENSG00000166965.81572.973601285.086500.291503.565402.65360K562MTPAP
RCCD1ENSG00000166965.8845.179701066.65990-0.335802.755201.52970K562NCBP2
RCCD1ENSG00000166965.82045.197601427.767900.5184014.4160012.89840K562NSUN2
RCCD1ENSG00000166965.81334.07120941.226600.503104.961903.81240K562PPIG
RCCD1ENSG00000166965.8399.19420811.45060-1.023405.188804.16230K562PRPF8
RCCD1ENSG00000166965.8771.915301116.69300-0.532704.673403.83270K562PTBP1
RCCD1ENSG00000166965.81532.433502296.31330-0.583505.652204.48870K562PUF60
RCCD1ENSG00000166965.82661.192001799.128800.564707.230806.40010K562PUS1
RCCD1ENSG00000166965.82072.468601753.057100.241402.443801.88040K562RBM15
RCCD1ENSG00000166965.8415.94720826.28570-0.990205.039203.93360K562RPS19
RCCD1ENSG00000166965.8670.190101041.02320-0.635405.733004.22450K562RPS3
RCCD1ENSG00000166965.8709.75540965.10800-0.443403.837702.55480K562SAFB
RCCD1ENSG00000166965.81677.639901408.959500.251702.583401.79470K562SF3A3
RCCD1ENSG00000166965.8670.28360891.84470-0.412003.902802.88200K562SF3B4
RCCD1ENSG00000166965.8759.746301094.80540-0.527104.625703.71570K562SRSF1
RCCD1ENSG00000166965.81540.385601200.808400.359204.558703.03600K562SRSF7
RCCD1ENSG00000166965.81477.09900994.897900.570005.475103.63060K562STAU1
RCCD1ENSG00000166965.8605.205201086.43810-0.8441013.8640012.02630K562SYNCRIP
RCCD1ENSG00000166965.81388.134001107.855200.325302.290101.64330K562TARDBP
RCCD1ENSG00000166965.81208.07590888.035300.443903.979102.80070K562TRIM56
RCCD1ENSG00000166965.81816.884001295.385200.488006.127404.79260K562WDR3
RCCD1ENSG00000166965.82544.025301901.816300.419602.693501.84370K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RCCD1 is not available on ENCORE database.





5 RBPs can affect the splicing of RCCD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERCCD1ENSG00000166965.8chr15+914990299149911391498113914981789149984191500733-0.776000.000000.00000excludedK562SRSF1
SERCCD1ENSG00000166965.8chr15+914990299149911391498113914981789149984191500733-0.405000.000000.00001excludedK562PUS1
SERCCD1ENSG00000166965.8chr15+9149902991499113914981139149817891499841915007330.389000.000000.00000includedK562HNRNPU
SERCCD1ENSG00000166965.8chr15+914990299149911391498113914981789149984191500733-0.298000.003960.07678excludedK562RBM15
RIRCCD1ENSG00000166965.8chr15+9149984191500733914998419150013091500342915007330.383000.007940.07182includedHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RCCD1 is not avaliable on ENCORE database.