RBM12B

General Information

Gene Name       : RBM12B
Gene ID             : ENSG00000183808.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RBM12B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RBM12BENSG00000183808.1116.3717.3616.87ENCSR000AEF
HepG2RBM12BENSG00000183808.116.4314.0810.25ENCSR985KAT
K562RBM12BENSG00000183808.1116.6221.7619.19ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RBM12B is not avaliable on ENCORE database.



Proteins bound to RNA
  • RBM12B RNA is bound by 22 proteins.  







eCLIP assay for RBM12B is not avaliable on ENCORE database.





22 proteins are bound to RBM12B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr89474244594742524-3'-UTR,intron-Distal,intron-Proximal3.356453.78824HepG2KHSRP
chr89474546094745517-3'-UTR,intron-Distal3.7403111.13251K562PUM2
chr89474504494745092-3'-UTR,intron-Distal3.491567.11596K562PUM2
chr89475302794753140-5'-UTR,intron-Distal,intron-Proximal4.800164.97153HepG2EXOSC5
chr89475303594753092-5'-UTR,intron-Distal,intron-Proximal3.062333.04831K562RBM15
chr89475314594753186-5'-UTR,intron-Distal,intron-Proximal4.101756.05313K562YWHAG
chr89475313094753180-5'-UTR,intron-Distal3.579046.97590K562SLTM
chr89475310494753233-5'-UTR,intron-Distal,intron-Proximal4.7908013.58049HepG2NCBP2
chr89475310394753228-5'-UTR,intron-Distal,intron-Proximal3.079894.32969K562DDX3X
chr89474643194746511-CDS,intron-Distal4.152338.90110HepG2SRSF9
chr89474750194747540-CDS,intron-Distal3.119344.26492HepG2BCLAF1
chr89474763094747680-CDS,intron-Distal5.164608.60711K562YWHAG
chr89474842294748467-CDS,intron-Distal3.566177.68081K562SLTM
chr89474713894747254-CDS,intron-Distal3.143329.89623K562SAFB2
chr89474659694746684-CDS,intron-Distal,intron-Proximal5.5195412.85567HepG2SRSF9
chr89474669294746829-CDS,intron-Distal,intron-Proximal4.7340113.84458HepG2SLTM
chr89474805894748109-CDS,intron-Distal,intron-Proximal3.624699.73303HepG2HLTF
chr89474830494748393-CDS,intron-Distal,intron-Proximal3.117413.07370K562TRA2A
chr89474608494746107-CDS,intron-Distal4.645845.51981K562YWHAG
chr89474792594747990-CDS,intron-Distal4.062568.07418K562SAFB2
chr89474845694748502-CDS,intron-Distal4.2120811.78233K562YWHAG
chr89474818194748228-CDS,intron-Distal,intron-Proximal3.971749.67879HepG2HLTF
chr89474684694746883-CDS,intron-Distal4.0474912.87071K562SLTM
chr89474825794748370-CDS,intron-Distal,intron-Proximal4.7269519.80358K562YWHAG
chr89474642594746515-CDS,intron-Distal4.944278.84267HepG2GRWD1
chr89474831994748376-CDS,intron-Distal,intron-Proximal3.767634.51666K562RBM15
chr89474830894748389-CDS,intron-Distal,intron-Proximal3.4627416.14536HepG2HLTF
chr89474593694746025-CDS,intron-Distal4.5174517.77440K562YWHAG
chr89474594294746008-CDS,intron-Distal3.108894.68262K562RBM15
chr89474773894747783-CDS,intron-Distal3.674109.93178HepG2HLTF
chr89474591094745993-CDS,intron-Distal3.382135.78766HepG2RBM22
chr89474823694748299-CDS,intron-Distal,intron-Proximal4.3463212.67651HepG2HLTF
chr89474749894747562-CDS,intron-Distal3.156379.69514HepG2HLTF
chr89474634494746394-CDS,intron-Distal3.365918.10854K562SLTM
chr89474688494746945-CDS,intron-Distal3.8389614.60088K562SLTM
chr89474825294748310-CDS,intron-Distal,intron-Proximal3.7767711.79915K562UCHL5
chr89474589094745927-CDS,intron-Distal3.490268.23585HepG2HLTF
chr89474671994746736-CDS,intron-Distal,intron-Proximal4.010666.12589K562SLTM
chr89474669994746742-CDS,intron-Distal,intron-Proximal3.221073.63681K562RBM15
chr89474837894748431-CDS,intron-Distal,intron-Proximal3.182368.75367K562SAFB2
chr89474599794746024-CDS,intron-Distal3.952659.12701K562SLTM
chr89474594394745982-CDS,intron-Distal3.451087.39658HepG2SLTM
chr89474855794748590-CDS,intron-Distal3.457875.32489K562YWHAG
chr89474831094748373-CDS,intron-Distal,intron-Proximal4.4497117.49963K562SLTM
chr89474669294746744-CDS,intron-Distal,intron-Proximal3.248654.14618K562ZNF622
chr89474804794748105-CDS,intron-Distal,intron-Proximal5.5400912.14114K562YWHAG
chr89474668694746731-CDS,intron-Distal,intron-Proximal3.318646.10605K562YWHAG
chr89474675594746789-CDS,intron-Distal,intron-Proximal3.283703.67498K562SAFB2
chr89474607794746139-CDS,intron-Distal3.9084811.65331K562SLTM
chr89474838494748438-CDS,intron-Distal,intron-Proximal3.572138.75642K562UCHL5
chr89474683394746945-CDS,intron-Distal5.5835811.40236HepG2SRSF9
chr89474697194747040-CDS,intron-Distal3.068086.55915K562BUD13
chr89474619294746249-CDS,intron-Distal4.1574913.79592K562SLTM
chr89474787494747910-CDS,intron-Distal3.855496.32553K562YWHAG
chr89474857594748593-CDS,intron-Distal4.901105.32699K562SLTM
chr89474695694747037-CDS,intron-Distal3.805337.12207HepG2GRWD1
chr89474820494748259-CDS,intron-Distal,intron-Proximal4.221407.05539K562NIPBL
chr89474819394748257-CDS,intron-Distal,intron-Proximal3.859049.86003K562YWHAG
chr89474843894748500-CDS,intron-Distal3.6740313.36249K562UCHL5
chr89474592794745957-CDS,intron-Distal3.1622811.08719HepG2HLTF
chr89474695294747028-CDS,intron-Distal3.4601715.26886K562SLTM
chr89474712294747199-CDS,intron-Distal4.7517425.01277HepG2HLTF
chr89474696794747005-CDS,intron-Distal4.311899.12813HepG2HLTF
chr89474674194746808-CDS,intron-Distal,intron-Proximal4.9560621.46195K562SLTM
chr89474688894746956-CDS,intron-Distal3.391863.85127HepG2GRWD1
chr89474787594747918-CDS,intron-Distal3.9260011.43233K562SLTM
chr89474712894747167-CDS,intron-Distal3.152333.02345K562ZNF622
chr89474744394747580-CDS,intron-Distal3.7590011.22390K562SAFB2
chr89474588394745927-CDS,intron-Distal3.850545.49916K562SAFB2
chr89474668494746816-CDS,intron-Distal,intron-Proximal4.9596318.78471HepG2SRSF9
chr89474605194746110-CDS,intron-Distal4.645016.14735HepG2SRSF9
chr89474714194747192-CDS,intron-Distal3.639558.77730K562UCHL5
chr89474659694746711-CDS,intron-Distal,intron-Proximal4.5708617.77898K562SLTM
chr89474714494747214-CDS,intron-Distal5.7525414.76496K562YWHAG
chr89474712094747184-CDS,intron-Distal4.346597.49468HepG2BCLAF1
chr89474692094746951-CDS,intron-Distal4.854786.37193K562YWHAG
chr89474651194746596-CDS,intron-Distal5.3336510.91204HepG2SRSF9
chr89474786294747925-CDS,intron-Distal3.9144111.58826K562SAFB2
chr89474839694748442-CDS,intron-Distal4.004564.97325K562YWHAG
chr89474672894746851-CDS,intron-Distal,intron-Proximal4.622164.81156HepG2SRSF1
chr89474652094746570-CDS,intron-Distal4.0763513.34220K562SLTM
chr89474590294745936-CDS,intron-Distal5.268759.14888K562YWHAG
chr89474843194748503-CDS,intron-Distal4.2372613.71617K562SAFB2
chr89474641394746486-CDS,intron-Distal3.800337.14350HepG2SLTM
chr89474593194745979-CDS,intron-Distal3.6599911.10920K562SLTM
chr89474781794747831-CDS,intron-Distal4.423924.11400K562YWHAG
chr89474635494746383-CDS,intron-Distal4.192784.01898HepG2SLTM
chr89474837694748442-CDS,intron-Distal,intron-Proximal3.156313.78791K562RBM15
chr89474832694748387-CDS,intron-Distal,intron-Proximal3.454305.69342HepG2SLTM
chr89474856294748600-CDS,intron-Distal3.900389.10042HepG2HLTF
chr89474774094747784-CDS,intron-Distal4.296277.69925K562YWHAG
chr89474680894746838-CDS,intron-Distal3.623318.07175K562SLTM
chr89475168394751833-intron-Distal4.611194.78076K562HNRNPM
chr89475253794752633-intron-Distal4.1159417.71899K562SLTM
chr89475276594752798-intron-Distal,intron-Proximal3.2266512.80914K562SLTM
chr89475271994752763-intron-Distal,intron-Proximal3.8113810.63799K562SLTM
chr89475278594752843-intron-Distal,intron-Proximal5.5856613.01450K562YWHAG
chr89475010494750157-intron-Distal3.304823.64715K562EXOSC5
chr89475279894752825-intron-Distal,intron-Proximal3.336469.76993K562SLTM
chr89475178594751845-intron-Distal5.080227.23549K562YWHAG
chr89475228394752344-intron-Distal5.225828.08961K562YWHAG
chr89475272394752767-intron-Distal,intron-Proximal5.316067.80230K562YWHAG
chr89475298594753082-intron-Distal,intron-Proximal3.7164011.46810K562YWHAG
chr89475166294751719-intron-Distal4.002176.98528HepG2HNRNPM
chr89475263394752719-intron-Distal5.0194634.79086K562SLTM
chr89475029494750396-intron-Distal3.191805.08467HepG2HNRNPM
chr89475303294753081-intron-Distal,intron-Proximal3.009829.61355HepG2RBM22
chr89475271094752763-intron-Distal,intron-Proximal4.382269.71076HepG2HNRNPM
chr89475261294752687-intron-Distal3.048345.65641K562YWHAG
chr89475266194752771-intron-Distal,intron-Proximal4.1899610.22385K562HNRNPM
chr89475156394751620-intron-Distal3.858864.87260HepG2HNRNPM
chr89475236594752396-intron-Distal4.587475.43111K562YWHAG
chr89475259394752710-intron-Distal3.015506.93528K562SAFB2
chr89475276894752832-intron-Distal,intron-Proximal3.634416.58367HepG2HNRNPM
chr89475265994752710-intron-Distal3.267934.53269HepG2HNRNPM
chr89475211994752167-intron-Distal3.441803.91363K562YWHAG
chr89475261294752706-intron-Distal3.245377.43834HepG2SLTM
chr89475212194752175-intron-Distal4.591195.14122HepG2PCBP2
chr89475010494750205-intron-Distal3.698785.45871HepG2HNRNPM
chr89475171994751880-intron-Distal5.0725514.03469HepG2HNRNPM
chr89475298494753080-intron-Distal,intron-Proximal4.2285027.68125K562SLTM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RBM12B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RBM12B is not available on ENCORE database.

  • 86 RBPs can affect the levels of RBM12B.  








The Knockdown/knockout RNA-Seq assay for RBM12B is not available on ENCORE database.





86 RBPs can affect the gene expression of RBM12B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RBM12BENSG00000183808.7698.80270837.69010-0.261502.269501.70860HepG2ACO1
RBM12BENSG00000183808.7361.70480760.59560-1.0723010.670709.69340HepG2AKAP1
RBM12BENSG00000183808.7613.60270841.69900-0.456003.854102.96220HepG2AKAP8L
RBM12BENSG00000183808.7479.82630629.34310-0.391302.131201.43740HepG2ASCC1
RBM12BENSG00000183808.7893.702201081.85680-0.275602.516801.85690HepG2AUH
RBM12BENSG00000183808.7344.00750724.73300-1.075004.923003.66900HepG2BCCIP
RBM12BENSG00000183808.7561.67310701.60350-0.320901.839801.34310HepG2BOP1
RBM12BENSG00000183808.7344.34100570.84710-0.729307.820706.12870HepG2YBX3
RBM12BENSG00000183808.7599.30080774.78380-0.370504.118503.12420HepG2DDX19B
RBM12BENSG00000183808.7394.26310565.55230-0.520503.809503.02600HepG2DDX21
RBM12BENSG00000183808.7466.38180728.62340-0.643705.004304.18440HepG2DDX3X
RBM12BENSG00000183808.7441.21750712.50610-0.691402.790202.01420HepG2DDX55
RBM12BENSG00000183808.71129.65560731.439600.627003.226902.17310HepG2DDX59
RBM12BENSG00000183808.7329.65350625.83100-0.924807.923106.92950HepG2DDX6
RBM12BENSG00000183808.7411.59360560.48040-0.445403.621002.82240HepG2DNAJC21
RBM12BENSG00000183808.7397.79510555.60180-0.482004.934904.10370HepG2DNAJC2
RBM12BENSG00000183808.7938.064901242.05220-0.405003.148302.51390HepG2ETF1
RBM12BENSG00000183808.7503.70240377.472600.416102.527301.77470HepG2FUBP3
RBM12BENSG00000183808.7821.25950630.059700.382202.486401.82240HepG2HNRNPK
RBM12BENSG00000183808.7492.72030696.81660-0.500003.355802.66930HepG2HNRNPLL
RBM12BENSG00000183808.7707.13590549.377700.364102.563601.64690HepG2HNRNPM
RBM12BENSG00000183808.7567.09240765.80860-0.433405.169303.78410HepG2KIF1C
RBM12BENSG00000183808.7897.20100671.067700.418902.754702.10150HepG2MAGOH
RBM12BENSG00000183808.7966.18560690.750500.484003.447602.74400HepG2NCBP2
RBM12BENSG00000183808.7378.12620621.35360-0.716503.767002.71750HepG2PABPC1
RBM12BENSG00000183808.7765.25840606.475900.335402.721402.17740HepG2PTBP1
RBM12BENSG00000183808.7672.52280820.83680-0.287502.010601.43280HepG2PUM2
RBM12BENSG00000183808.7892.98470656.865500.442904.095903.35600HepG2QKI
RBM12BENSG00000183808.7584.53100853.55830-0.546205.712204.53710HepG2RBM15
RBM12BENSG00000183808.7838.81020674.963900.313402.506201.98710HepG2NELFE
RBM12BENSG00000183808.7880.98790628.610900.486905.568604.73180HepG2RECQL
RBM12BENSG00000183808.7311.36160458.75370-0.559103.817103.10570HepG2RPS19
RBM12BENSG00000183808.7302.35940460.45690-0.606803.761602.66400HepG2SERBP1
RBM12BENSG00000183808.7866.68460659.085300.394903.829103.29560HepG2SRSF1
RBM12BENSG00000183808.7926.46510764.017400.278002.404701.81670HepG2SRSF5
RBM12BENSG00000183808.7755.76280536.190000.495105.847305.09830HepG2SRSF9
RBM12BENSG00000183808.71174.957201018.104100.206601.927201.47950HepG2SSB
RBM12BENSG00000183808.7353.15800537.68560-0.606404.770803.55210HepG2SUPT6H
RBM12BENSG00000183808.7440.26220709.37830-0.688202.589301.93220HepG2SUPV3L1
RBM12BENSG00000183808.71083.87980592.376200.8715015.9701014.78740HepG2TAF15
RBM12BENSG00000183808.7268.92730475.52600-0.822302.987501.95370HepG2TFIP11
RBM12BENSG00000183808.7445.31960607.47350-0.448003.416402.87230HepG2TIAL1
RBM12BENSG00000183808.7334.88660612.99830-0.8722013.3489012.24350HepG2TRIM56
RBM12BENSG00000183808.71265.19780681.121900.8933012.0123010.67350HepG2U2AF1
RBM12BENSG00000183808.7253.75500419.11280-0.723903.201902.38630HepG2UCHL5
RBM12BENSG00000183808.7632.76190849.55030-0.425004.854003.96970HepG2UPF1
RBM12BENSG00000183808.7294.59070649.80920-1.141304.559003.25230HepG2UPF2
RBM12BENSG00000183808.7384.15000611.36630-0.670404.261902.89840HepG2XPO5
RBM12BENSG00000183808.7364.20900698.30250-0.939104.374303.46800HepG2XRN2
RBM12BENSG00000183808.7713.70730538.412800.406504.099303.30610HepG2ZC3H8
RBM12BENSG00000183808.7694.71150934.34050-0.427505.851905.13410HepG2ZNF622
RBM12BENSG00000183808.71247.675202126.18830-0.7690021.3928019.92730K562AGGF1
RBM12BENSG00000183808.71208.780801498.40920-0.309903.498301.77940K562AKAP1
RBM12BENSG00000183808.71670.333402336.28960-0.484105.759304.21600K562AKAP8
RBM12BENSG00000183808.71534.312502212.37810-0.528006.573405.53460K562AKAP8L
RBM12BENSG00000183808.71914.661002321.28470-0.277803.088502.12070K562ATP5C1
RBM12BENSG00000183808.72081.381502540.96750-0.287802.943501.72190K562CCDC124
RBM12BENSG00000183808.72351.664902819.90750-0.262002.964001.81580K562CPEB4
RBM12BENSG00000183808.74857.260204165.079200.221702.222101.34870K562CELF1
RBM12BENSG00000183808.71146.331901518.20740-0.405304.311802.96950K562DDX3X
RBM12BENSG00000183808.71633.041002917.84530-0.8373028.5602026.67740K562DDX47
RBM12BENSG00000183808.71242.742301539.23990-0.308703.305001.84410K562DDX6
RBM12BENSG00000183808.71752.235902380.78520-0.442207.432705.87590K562DKC1
RBM12BENSG00000183808.71360.588001667.52750-0.293503.498502.12160K562EIF2S1
RBM12BENSG00000183808.7485.35610854.44440-0.815904.118502.86440K562EIF3A
RBM12BENSG00000183808.7860.041801477.35700-0.7805010.604009.04010K562EIF3G
RBM12BENSG00000183808.72867.752903387.41770-0.240302.776501.83750K562EIF4G2
RBM12BENSG00000183808.71018.993101384.49720-0.442205.536903.58970K562EWSR1
RBM12BENSG00000183808.71227.481101759.34610-0.519305.872804.60560K562FIP1L1
RBM12BENSG00000183808.71287.940701649.48960-0.357004.537703.79000K562FXR1
RBM12BENSG00000183808.71694.214202430.62960-0.520707.038805.82410K562GRSF1
RBM12BENSG00000183808.72541.299501916.794600.406803.538902.12350K562HNRNPK
RBM12BENSG00000183808.72107.942202636.95650-0.323003.206202.05910K562HNRNPL
RBM12BENSG00000183808.71472.905902385.40610-0.6956010.079108.58920K562HSPD1
RBM12BENSG00000183808.71575.419601951.77010-0.309002.557801.42570K562IGF2BP3
RBM12BENSG00000183808.71644.706202347.94640-0.513606.960005.50850K562KIF1C
RBM12BENSG00000183808.71436.212702247.51350-0.646109.271606.90790K562MAK16
RBM12BENSG00000183808.71613.217602012.84110-0.319302.991302.02770K562MATR3
RBM12BENSG00000183808.71791.416602630.28460-0.554105.185403.85950K562MBNL1
RBM12BENSG00000183808.71320.183601843.63370-0.481803.338402.35140K562NAA15
RBM12BENSG00000183808.71140.327301583.88070-0.474005.997904.20740K562NCBP2
RBM12BENSG00000183808.71072.707301438.29210-0.423103.191301.77550K562NONO
RBM12BENSG00000183808.72573.513102203.475400.223903.766702.91160K562NSUN2
RBM12BENSG00000183808.71228.329601898.86100-0.628402.831601.82670K562PABPN1
RBM12BENSG00000183808.71405.297101997.09640-0.507005.576904.34430K562PPIG
RBM12BENSG00000183808.7974.681101420.53030-0.543405.247604.21460K562PRPF8
RBM12BENSG00000183808.71384.870301959.49900-0.500706.737905.73840K562PTBP1
RBM12BENSG00000183808.73333.547803851.79800-0.208502.281201.40780K562PUM2
RBM12BENSG00000183808.71207.704102194.19520-0.8614014.8821013.66470K562PUS1
RBM12BENSG00000183808.71232.955002137.81060-0.7940014.6904013.31050K562RBM15
RBM12BENSG00000183808.7655.641101446.98880-1.1421016.3582014.35020K562RPS19
RBM12BENSG00000183808.71017.187001446.40050-0.507904.418503.11600K562RPS3
RBM12BENSG00000183808.71224.127101723.60280-0.493702.482601.67400K562SF3B4
RBM12BENSG00000183808.71587.354801920.92320-0.275202.359001.69830K562SRSF1
RBM12BENSG00000183808.71449.963701814.07050-0.323202.596201.58450K562SRSF5
RBM12BENSG00000183808.71990.959001615.374600.301503.317202.02610K562SRSF7
RBM12BENSG00000183808.72915.572602308.485300.336702.830001.45340K562SSRP1
RBM12BENSG00000183808.71516.657201944.18380-0.358302.892302.16920K562TARDBP
RBM12BENSG00000183808.71551.779701875.36270-0.273202.366201.61640K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RBM12B is not available on ENCORE database.





3 RBPs can affect the splicing of RBM12B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERBM12BENSG00000183808.7chr8-947495349474958394741583947486669475285694752946-0.129000.006530.09056excludedK562SF3B4
SERBM12BENSG00000183808.7chr8-947495349474958394748390947486669475285694752946-0.192000.000160.00372excludedK562PUS1
SERBM12BENSG00000183808.7chr8-947495349474958394748390947486669475285694752946-0.089000.003740.08987excludedK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RBM12B is not avaliable on ENCORE database.