PTDSS1

General Information

Gene Name       : PTDSS1
Gene ID             : ENSG00000156471.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PTDSS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PTDSS1ENSG00000156471.12120.47129.37124.92ENCSR000AEF
HepG2PTDSS1ENSG00000156471.1286.7397.3292.03ENCSR985KAT
K562PTDSS1ENSG00000156471.12101.40100.52100.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PTDSS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PTDSS1 RNA is bound by 11 proteins.  







eCLIP assay for PTDSS1 is not avaliable on ENCORE database.





11 proteins are bound to PTDSS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr89734605097346143+3'-UTR,CDS5.114977.70160HepG2UPF1
chr89734600697346085+3'-UTR,CDS3.820545.28224K562METAP2
chr89734633297346444+3'-UTR3.779173.93340HepG2LIN28B
chr89734595197345970+3'-UTR,CDS4.330183.20319K562UPF1
chr89734593497346005+3'-UTR,CDS3.788264.21448HepG2UPF1
chr89734597397345992+3'-UTR,CDS4.1172711.26428K562YBX3
chr89734602897346060+3'-UTR,CDS4.903017.64008K562YBX3
chr89731192197311997+3'-UTR,5'-UTR,CDS,intron-Proximal3.343305.56979K562YBX3
chr89734632797346375+3'-UTR4.195663.25521K562LIN28B
chr89734651297346557+3'-UTR3.076885.13250K562YBX3
chr89734576897345774+3'-UTR,CDS,intron-Proximal5.3456011.55508K562YBX3
chr89734585697345907+3'-UTR,CDS,intron-Proximal3.010244.07897HepG2UPF1
chr89734622097346282+3'-UTR4.258624.73785K562TIA1
chr89734627597346374+3'-UTR4.7417113.07630HepG2UPF1
chr89734662597346672+3'-UTR3.510183.66308K562UPF1
chr89734668097346699+3'-UTR3.079114.17855K562YBX3
chr89734599297346028+3'-UTR,CDS4.9586315.58243K562YBX3
chr89734645597346482+3'-UTR3.707153.02850K562YBX3
chr89734594597345973+3'-UTR,CDS3.855035.57640K562YBX3
chr89734577497345824+3'-UTR,CDS,intron-Proximal5.6232612.88503K562YBX3
chr89732179897321870+3'-UTR,CDS,intron-Proximal5.054255.35117HepG2PRPF8
chr89732178497321845+3'-UTR,CDS,intron-Proximal4.5151412.82455K562YBX3
chr89734649097346587+3'-UTR3.281186.99055K562UPF1
chr89727424097274308+5'-UTR,CDS6.1461665.02292HepG2DDX3X
chr89727419797274242+5'-UTR4.035658.51000K562YBX3
chr89727416197274176+5'-UTR5.703476.75859HepG2DDX3X
chr89727418697274240+5'-UTR8.3994746.19132HepG2DDX3X
chr89727425497274364+5'-UTR,CDS4.1523327.29516K562DDX3X
chr89727416797274254+5'-UTR5.0894718.61638K562DDX3X
chr89730739497307448+5'-UTR,CDS3.129524.61826K562IGF2BP2
chr89729633997296373+CDS,intron-Distal3.082847.44843K562YBX3
chr89729926397299323+CDS,intron-Distal4.167173.98311K562IGF2BP1
chr89729924997299282+CDS,intron-Distal,intron-Proximal3.804094.93097K562YBX3
chr89729633597296409+CDS,intron-Distal,intron-Proximal5.788995.35117HepG2PRPF8
chr89729934797299408+CDS,intron-Distal,intron-Proximal3.994284.16174HepG2PRPF8
chr89729637397296381+CDS,intron-Distal3.764404.31744K562YBX3
chr89732607797326200+intron-Distal4.570305.04769HepG2PTBP1
chr89732610697326203+intron-Distal3.865514.22415K562PTBP1
chr89727502797275122+intron-Distal3.797844.01234HepG2HNRNPL
chr89727513797275236+intron-Distal3.957953.14791K562HNRNPL
chr89727484197274912+intron-Distal4.087874.04407K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PTDSS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PTDSS1 is not available on ENCORE database.

  • 99 RBPs can affect the levels of PTDSS1.  








The Knockdown/knockout RNA-Seq assay for PTDSS1 is not available on ENCORE database.





99 RBPs can affect the gene expression of PTDSS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PTDSS1ENSG00000156471.81143.838701465.56220-0.357605.222504.43980HepG2ACO1
PTDSS1ENSG00000156471.81199.179901472.30960-0.296003.427002.58430HepG2AKAP8L
PTDSS1ENSG00000156471.81504.156101244.475500.273301.896701.39300HepG2BOP1
PTDSS1ENSG00000156471.82075.685801587.358900.386903.184002.35640HepG2CIRBP
PTDSS1ENSG00000156471.81047.143501465.07750-0.484509.416008.33260HepG2CKAP4
PTDSS1ENSG00000156471.8818.895501239.72050-0.598304.323802.49030HepG2CSTF2T
PTDSS1ENSG00000156471.81610.865201336.390300.269401.885401.31310HepG2DDX21
PTDSS1ENSG00000156471.82817.468801934.309800.542505.546304.68840HepG2DDX3X
PTDSS1ENSG00000156471.81012.609601360.04910-0.425602.666801.90460HepG2DDX55
PTDSS1ENSG00000156471.81312.053501661.63330-0.340802.053201.51430HepG2DDX6
PTDSS1ENSG00000156471.81135.170101402.10290-0.304703.405102.66390HepG2DKC1
PTDSS1ENSG00000156471.8959.798301176.16310-0.293302.701902.00410HepG2DNAJC21
PTDSS1ENSG00000156471.8820.922601165.85080-0.506109.016607.91950HepG2DNAJC2
PTDSS1ENSG00000156471.8870.498501101.62810-0.339702.118201.31140HepG2EEF2
PTDSS1ENSG00000156471.81251.529701597.34740-0.352002.450101.89070HepG2EIF2S1
PTDSS1ENSG00000156471.81096.926201718.73450-0.647904.957504.05340HepG2EIF4B
PTDSS1ENSG00000156471.81206.034201935.00440-0.6821016.2710014.59070HepG2EIF4G1
PTDSS1ENSG00000156471.81446.305102267.40010-0.6487016.4217015.15590HepG2ETF1
PTDSS1ENSG00000156471.81184.697501527.61850-0.366802.152101.46910HepG2FIP1L1
PTDSS1ENSG00000156471.81426.179501781.09040-0.320602.201101.58090HepG2FXR1
PTDSS1ENSG00000156471.8653.429301652.20640-1.3383023.5285021.68210HepG2G3BP1
PTDSS1ENSG00000156471.8702.474101295.07820-0.8825010.322809.14080HepG2GPKOW
PTDSS1ENSG00000156471.8768.294301187.43180-0.628107.249506.27700HepG2HNRNPA1
PTDSS1ENSG00000156471.81273.504101580.30740-0.311404.079003.22550HepG2HNRNPF
PTDSS1ENSG00000156471.81334.313201786.53370-0.421108.035406.94180HepG2HNRNPL
PTDSS1ENSG00000156471.8960.023101312.08850-0.450706.769405.85910HepG2HNRNPU
PTDSS1ENSG00000156471.8859.112201233.31600-0.521603.617802.21040HepG2HSPD1
PTDSS1ENSG00000156471.81231.859501556.14040-0.337103.559402.74650HepG2IGF2BP1
PTDSS1ENSG00000156471.81152.960201340.25080-0.217202.359401.67480HepG2ILF2
PTDSS1ENSG00000156471.82654.891001791.679400.567205.376704.52180HepG2MATR3
PTDSS1ENSG00000156471.81633.446001236.252500.401803.884202.92920HepG2MSI2
PTDSS1ENSG00000156471.81219.371001633.17050-0.421503.221802.44440HepG2PABPC4
PTDSS1ENSG00000156471.8778.738801349.57820-0.793306.366904.84610HepG2PCBP2
PTDSS1ENSG00000156471.8556.78050739.54240-0.409503.362202.00230HepG2PKM
PTDSS1ENSG00000156471.8504.209501049.24720-1.0573013.7844012.17840HepG2PRPF8
PTDSS1ENSG00000156471.81264.741501856.50770-0.553707.067806.17150HepG2PUF60
PTDSS1ENSG00000156471.82279.849701970.799500.210103.143502.52140HepG2PUM1
PTDSS1ENSG00000156471.81147.591101969.33840-0.7791015.5962014.08330HepG2PUM2
PTDSS1ENSG00000156471.81823.351301492.745900.288503.986803.27240HepG2PUS1
PTDSS1ENSG00000156471.81217.177601885.56800-0.6315011.3049010.16870HepG2QKI
PTDSS1ENSG00000156471.8542.449701302.34180-1.2635011.214409.86330HepG2RAVER1
PTDSS1ENSG00000156471.81161.332101735.22730-0.579308.676907.26980HepG2RBM15
PTDSS1ENSG00000156471.81271.384701711.27560-0.428704.715003.85500HepG2RBM25
PTDSS1ENSG00000156471.81456.984901937.59080-0.411306.600205.82470HepG2NELFE
PTDSS1ENSG00000156471.81269.645901804.60520-0.507309.439308.40220HepG2RECQL
PTDSS1ENSG00000156471.81052.714001702.54710-0.6936010.082808.91710HepG2RPLP0
PTDSS1ENSG00000156471.8544.16220870.17390-0.677307.665706.70280HepG2RPS19
PTDSS1ENSG00000156471.8935.919601308.96410-0.484004.258103.27290HepG2RPS2
PTDSS1ENSG00000156471.8692.775801037.93040-0.583204.420403.45180HepG2RRP9
PTDSS1ENSG00000156471.81381.424201168.458500.241402.660602.02580HepG2SAFB2
PTDSS1ENSG00000156471.8901.309101223.30310-0.440703.749602.94030HepG2SF3B1
PTDSS1ENSG00000156471.81383.094801812.62730-0.390205.957905.14720HepG2SF3B4
PTDSS1ENSG00000156471.8868.364801267.54910-0.545703.758901.86990HepG2SND1
PTDSS1ENSG00000156471.81857.953802140.50960-0.204202.249501.78250HepG2SRFBP1
PTDSS1ENSG00000156471.81645.754801891.99180-0.201202.156801.72490HepG2SRSF1
PTDSS1ENSG00000156471.81542.529901833.07240-0.249002.716402.09430HepG2SRSF5
PTDSS1ENSG00000156471.81221.369401552.63880-0.346204.945704.05640HepG2SRSF7
PTDSS1ENSG00000156471.81506.257401858.50480-0.303204.117703.51860HepG2SSB
PTDSS1ENSG00000156471.81700.164502084.67280-0.294104.501603.74350HepG2SUCLG1
PTDSS1ENSG00000156471.8625.658701353.93090-1.1137014.7996013.44910HepG2SUPV3L1
PTDSS1ENSG00000156471.81196.730101562.61550-0.384904.001203.00190HepG2TIA1
PTDSS1ENSG00000156471.8579.028301274.84740-1.1386025.9828024.74140HepG2TIAL1
PTDSS1ENSG00000156471.8926.050301307.73730-0.497902.889901.39240HepG2TRA2A
PTDSS1ENSG00000156471.8864.515401306.72020-0.596006.276205.34640HepG2U2AF1
PTDSS1ENSG00000156471.81689.064001424.041600.246102.855502.14740HepG2UPF1
PTDSS1ENSG00000156471.81021.702701332.79580-0.383502.533001.83730HepG2XRN2
PTDSS1ENSG00000156471.8543.891501154.32550-1.0857031.4282029.63590HepG2ZC3H8
PTDSS1ENSG00000156471.83341.596804197.71120-0.329103.030901.74240K562ABCF1
PTDSS1ENSG00000156471.84760.318803816.675100.318603.077501.76710K562APOBEC3C
PTDSS1ENSG00000156471.81867.294603945.54460-1.0793014.9178013.70600K562AQR
PTDSS1ENSG00000156471.81962.533902379.16930-0.277704.180302.98500K562BCLAF1
PTDSS1ENSG00000156471.81576.026501986.11560-0.333703.395702.52350K562CPSF6
PTDSS1ENSG00000156471.84156.116003065.684400.438909.954608.80920K562DDX47
PTDSS1ENSG00000156471.83235.202902684.741400.269003.500302.49810K562DKC1
PTDSS1ENSG00000156471.81655.378302260.99980-0.449803.105901.74410K562EEF2
PTDSS1ENSG00000156471.81617.984302184.57790-0.433204.061002.93940K562EFTUD2
PTDSS1ENSG00000156471.82167.849501578.927300.457203.847702.91860K562EIF3G
PTDSS1ENSG00000156471.81334.502601656.88010-0.312203.379002.07910K562EIF4B
PTDSS1ENSG00000156471.82467.588803017.41730-0.290202.435901.64060K562FIP1L1
PTDSS1ENSG00000156471.81610.438702020.78720-0.327502.630101.79710K562FMR1
PTDSS1ENSG00000156471.81216.657001712.78280-0.493404.504503.31200K562FTO
PTDSS1ENSG00000156471.82789.875801913.400900.5440011.4880010.34140K562FXR1
PTDSS1ENSG00000156471.81630.351702190.18410-0.425903.553301.90580K562GEMIN5
PTDSS1ENSG00000156471.81330.536601896.26740-0.511205.980304.81410K562GPKOW
PTDSS1ENSG00000156471.83817.175504619.81530-0.275302.657601.91630K562GRSF1
PTDSS1ENSG00000156471.82188.363302634.23540-0.267502.437401.43190K562HNRNPA1
PTDSS1ENSG00000156471.81178.331602015.09120-0.7741013.8472012.59480K562HNRNPC
PTDSS1ENSG00000156471.81401.183501799.61970-0.361003.334602.07310K562HNRNPF
PTDSS1ENSG00000156471.82759.049604091.00890-0.568307.827506.50770K562HSPD1
PTDSS1ENSG00000156471.81154.034701619.13440-0.488503.330702.29730K562KRR1
PTDSS1ENSG00000156471.82674.694102201.643100.280702.631601.81160K562MAGOH
PTDSS1ENSG00000156471.82889.303702197.192000.395004.702903.46720K562MATR3
PTDSS1ENSG00000156471.83486.248802966.147600.233002.083001.31010K562MBNL1
PTDSS1ENSG00000156471.81368.882601850.96190-0.435304.641403.48620K562METAP2
PTDSS1ENSG00000156471.82106.084202499.61960-0.247103.171202.30640K562MTPAP
PTDSS1ENSG00000156471.82495.997102777.27170-0.154102.152701.48610K562NSUN2
PTDSS1ENSG00000156471.81137.183901806.77950-0.668009.264407.40280K562PSIP1
PTDSS1ENSG00000156471.83228.591802139.026500.5939010.363009.13590K562PTBP1
PTDSS1ENSG00000156471.83719.289504918.39650-0.403207.637806.01820K562PUM2
PTDSS1ENSG00000156471.83289.452702474.308500.410704.337503.68010K562PUS1
PTDSS1ENSG00000156471.81666.668502051.12650-0.299402.381201.60660K562RBM22
PTDSS1ENSG00000156471.82352.451502740.50320-0.220302.355501.59770K562SF3A3
PTDSS1ENSG00000156471.81303.964101803.36000-0.467803.754402.61290K562SF3B1
PTDSS1ENSG00000156471.81131.843501562.84780-0.465504.686903.25170K562SRFBP1
PTDSS1ENSG00000156471.82477.982502807.70870-0.180202.332401.46440K562SRPK2
PTDSS1ENSG00000156471.83004.339402096.947800.518707.938206.74720K562SRSF1
PTDSS1ENSG00000156471.82778.565103621.10840-0.382103.284201.89300K562STAU1
PTDSS1ENSG00000156471.81553.656202058.29570-0.405803.051501.98170K562SUPV3L1
PTDSS1ENSG00000156471.82625.721302032.487000.369404.555703.49410K562SYNCRIP
PTDSS1ENSG00000156471.81231.505401737.79680-0.496804.478303.26670K562TIAL1
PTDSS1ENSG00000156471.81448.694401846.39480-0.350002.990701.99950K562TRIM56
PTDSS1ENSG00000156471.82691.011803529.88760-0.391503.696802.03190K562TRIP6
PTDSS1ENSG00000156471.82977.745903458.36590-0.215902.965901.65070K562TROVE2
PTDSS1ENSG00000156471.81049.937701613.86410-0.620205.937804.19940K562U2AF1
PTDSS1ENSG00000156471.81042.078201666.72090-0.6775011.494309.84720K562U2AF2
PTDSS1ENSG00000156471.81582.022702178.44360-0.461504.383903.07310K562UCHL5
PTDSS1ENSG00000156471.81927.564202519.77060-0.386504.419103.30320K562WDR3
PTDSS1ENSG00000156471.81688.061202218.25050-0.394103.320101.95680K562XRN2
PTDSS1ENSG00000156471.82903.047904445.25280-0.614706.721705.28280K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PTDSS1 is not available on ENCORE database.





1 RBPs can affect the splicing of PTDSS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPTDSS1ENSG00000156471.8chr8+9734325397343323973324739733257397345684973467800.076000.000600.07586includedK562DROSHA
MXEPTDSS1ENSG00000156471.8chr8+97285526972856189729633697296381972739429727444797299249972993740.229000.011840.098081includedK562DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PTDSS1 is not avaliable on ENCORE database.