PSMD12

General Information

Gene Name       : PSMD12
Gene ID             : ENSG00000197170.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PSMD12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PSMD12ENSG00000197170.966.5059.9163.20ENCSR000AEF
HepG2PSMD12ENSG00000197170.955.5394.3874.95ENCSR985KAT
K562PSMD12ENSG00000197170.997.92100.8899.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PSMD12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PSMD12 RNA is bound by 31 proteins.  







eCLIP assay for PSMD12 is not avaliable on ENCORE database.





31 proteins are bound to PSMD12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr176533697465337089-3'-UTR,CDS,intron-Distal,intron-Proximal3.146853.34065K562IGF2BP1
chr176534322165343255-3'-UTR,CDS,intron-Distal,intron-Proximal3.203703.94979HepG2BCLAF1
chr176534344565343477-3'-UTR,CDS,intron-Distal,intron-Proximal4.665304.78529HepG2BCLAF1
chr176533825965338339-3'-UTR,CDS,intron-Distal,intron-Proximal4.033658.70001HepG2PRPF8
chr176534328665343360-3'-UTR,CDS,intron-Distal,intron-Proximal4.0268811.21209HepG2BCLAF1
chr176535363365353704-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.590474.66077K562U2AF2
chr176533830865338359-3'-UTR,CDS,intron-Distal3.119344.26492HepG2BCLAF1
chr176533507465335134-3'-UTR,intron-Distal5.401278.15847K562PUM2
chr176535349765353567-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.734598.13161K562EFTUD2
chr176534349265343561-3'-UTR,CDS,intron-Distal3.489016.36421K562ZNF622
chr176533415065334248-3'-UTR,intron-Distal4.230173.54770K562IGF2BP1
chr176535341065353487-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.325125.00751HepG2BCLAF1
chr176534356165343604-3'-UTR,CDS,intron-Distal,intron-Proximal3.881335.08507K562ZNF622
chr176535351365353562-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.968657.40091HepG2U2AF2
chr176533824965338310-3'-UTR,CDS,intron-Distal,intron-Proximal5.085046.22530K562AQR
chr176534182565341976-3'-UTR,CDS,intron-Distal,intron-Proximal3.655725.87745K562BUD13
chr176534466565344680-3'-UTR,CDS,intron-Distal,intron-Proximal3.372623.07653K562ZNF622
chr176535350165353565-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.040544.36782K562SMNDC1
chr176535363165353702-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.919296.37709K562EFTUD2
chr176534072765340888-3'-UTR,CDS,intron-Distal3.436355.49938HepG2G3BP1
chr176534072265340813-3'-UTR,CDS,intron-Distal4.080349.39582HepG2BCLAF1
chr176533678465336849-3'-UTR,intron-Distal,intron-Proximal4.370005.19115K562NOLC1
chr176533683765336898-3'-UTR,intron-Distal,intron-Proximal3.1682210.50498K562PUM2
chr176534356765343601-3'-UTR,CDS,intron-Distal3.756603.68471HepG2BCLAF1
chr176533437765334432-3'-UTR,intron-Distal3.185135.12776HepG2U2AF2
chr176533658065336705-3'-UTR,intron-Distal3.594974.63751K562IGF2BP1
chr176535363665353704-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.732069.50483HepG2U2AF2
chr176534188365341975-3'-UTR,CDS,intron-Distal,intron-Proximal3.308187.33138HepG2BCLAF1
chr176534325565343286-3'-UTR,CDS,intron-Distal4.105655.79432HepG2BCLAF1
chr176534466365344687-3'-UTR,CDS,intron-Distal,intron-Proximal4.007555.36555HepG2BCLAF1
chr176533673665336863-3'-UTR,intron-Distal,intron-Proximal3.240988.71507K562ZC3H11A
chr176534334265343366-3'-UTR,CDS,intron-Distal,intron-Proximal3.266924.74755K562ZNF622
chr176533544165335534-3'-UTR,intron-Distal4.523065.31925HepG2QKI
chr176535362565353695-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.173683.22545HepG2PPIG
chr176535365065353744-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.4221910.42818K562SF3B4
chr176534073465340811-3'-UTR,CDS,intron-Distal3.641858.82426K562ZNF622
chr176533677665336842-3'-UTR,intron-Distal,intron-Proximal5.2798610.24910HepG2SUB1
chr176534326065343367-3'-UTR,CDS,intron-Distal,intron-Proximal3.536294.45817HepG2HLTF
chr176536257065362682-5'-UTR,CDS,intron-Distal,intron-Proximal4.5990115.56361K562UCHL5
chr176536265565362694-5'-UTR,intron-Distal,intron-Proximal3.478444.72521K562DDX3X
chr176536259465362655-5'-UTR,CDS,intron-Distal,intron-Proximal3.9489910.58311K562DDX3X
chr176535898565359092-5'-UTR,CDS,intron-Distal,intron-Proximal3.296313.81210HepG2KHSRP
chr176536248965362530-CDS,intron-Distal4.493244.27476HepG2AQR
chr176536250365362591-CDS,intron-Distal3.465118.39949HepG2GRWD1
chr176536248065362556-CDS,intron-Distal3.4723020.02917HepG2PRPF8
chr176535899465359087-CDS,intron-Distal,intron-Proximal3.764708.56571K562KHSRP
chr176536250865362570-CDS,intron-Distal3.530178.45427K562UCHL5
chr176536251165362593-CDS,intron-Distal3.673286.21712K562GRWD1
chr176535204465352137-intron-Distal5.1368911.93667K562EIF4G2
chr176536248165362528-intron-Distal3.260143.93669K562AQR
chr176536241365362468-intron-Distal4.8915111.41670HepG2RBM22
chr176536242765362483-intron-Distal4.345624.83107HepG2EFTUD2
chr176535327965353372-intron-Distal,intron-Proximal3.976647.90970K562KHSRP
chr176535416165354207-intron-Distal3.271793.02632HepG2ILF3
chr176535901465359076-intron-Distal,intron-Proximal4.149945.09669HepG2QKI
chr176535561265355710-intron-Distal3.287764.09325K562KHDRBS1
chr176536205565362144-intron-Distal4.632614.31871HepG2HNRNPM
chr176535902965359098-intron-Distal,intron-Proximal6.1801014.44342K562QKI
chr176536107665361141-intron-Distal3.871753.80060HepG2HNRNPC
chr176535431565354374-intron-Distal3.360484.15830HepG2ILF3
chr176533748365337591-intron-Distal4.715827.32421HepG2HNRNPC
chr176535205865352106-intron-Distal3.886173.46495K562TARDBP
chr176535315765353226-intron-Distal,intron-Proximal4.409885.41654K562KHSRP
chr176534093765341026-intron-Distal,intron-Proximal4.916907.67606K562CSTF2T
chr176534679265346862-intron-Distal4.370606.48336HepG2XPO5
chr176536235365362410-intron-Distal5.271675.99517HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PSMD12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PSMD12 is not available on ENCORE database.

  • 93 RBPs can affect the levels of PSMD12.  








The Knockdown/knockout RNA-Seq assay for PSMD12 is not available on ENCORE database.





93 RBPs can affect the gene expression of PSMD12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PSMD12ENSG00000197170.52037.599401447.829400.492907.198906.31300HepG2ACO1
PSMD12ENSG00000197170.52944.739902300.741200.355902.366701.87040HepG2AKAP1
PSMD12ENSG00000197170.51906.830901510.944700.335603.198802.37480HepG2CALR
PSMD12ENSG00000197170.51661.576002332.22920-0.489202.354301.46280HepG2CCAR1
PSMD12ENSG00000197170.5698.141901808.60290-1.3733028.1435026.04060HepG2CIRBP
PSMD12ENSG00000197170.52649.515202058.746100.363905.369504.52690HepG2CELF1
PSMD12ENSG00000197170.51582.607402213.93690-0.4843012.5509011.15800HepG2DAZAP1
PSMD12ENSG00000197170.51355.333801084.520000.321502.686101.78760HepG2DDX24
PSMD12ENSG00000197170.51699.903602203.88520-0.374602.828702.19650HepG2DDX3X
PSMD12ENSG00000197170.5821.395001170.91070-0.511508.716907.63700HepG2DNAJC2
PSMD12ENSG00000197170.51047.943501819.95900-0.7963010.206809.11070HepG2EIF2S1
PSMD12ENSG00000197170.51476.595702011.21110-0.445803.300402.60310HepG2EIF4A3
PSMD12ENSG00000197170.51654.545602092.12180-0.338502.973002.13060HepG2EIF4G2
PSMD12ENSG00000197170.52116.955502524.37930-0.253903.092002.46260HepG2ETF1
PSMD12ENSG00000197170.51412.801001056.254900.419504.024502.68350HepG2FASTKD2
PSMD12ENSG00000197170.51413.300802029.40170-0.522005.080304.16290HepG2FXR1
PSMD12ENSG00000197170.51292.624501882.47610-0.542304.888204.01520HepG2G3BP1
PSMD12ENSG00000197170.51373.374501784.56590-0.377802.578901.95800HepG2GPKOW
PSMD12ENSG00000197170.5870.951501192.64600-0.453504.375403.58790HepG2HNRNPA1
PSMD12ENSG00000197170.5994.733601326.60270-0.415403.667102.87770HepG2HNRNPC
PSMD12ENSG00000197170.51220.440601774.76810-0.5402010.035808.77740HepG2HNRNPF
PSMD12ENSG00000197170.51081.750101703.03500-0.654707.449906.47580HepG2HNRNPLL
PSMD12ENSG00000197170.51297.631501057.687800.294902.617701.69070HepG2HNRNPM
PSMD12ENSG00000197170.51154.224701747.65040-0.598508.924407.69450HepG2IGF2BP1
PSMD12ENSG00000197170.51462.256201924.67800-0.396402.323901.41760HepG2KHSRP
PSMD12ENSG00000197170.51562.878101280.557900.287302.340501.30240HepG2LARP7
PSMD12ENSG00000197170.52602.086302041.445000.350002.359201.77330HepG2MATR3
PSMD12ENSG00000197170.51114.151601736.65300-0.640404.549903.28340HepG2MTPAP
PSMD12ENSG00000197170.51577.549802089.50940-0.405503.074002.40830HepG2NCBP2
PSMD12ENSG00000197170.51990.687001035.580300.942707.392405.89100HepG2PABPC1
PSMD12ENSG00000197170.51349.096901860.73870-0.463903.907303.06010HepG2PABPC4
PSMD12ENSG00000197170.5848.226201175.39980-0.470606.056404.99830HepG2PPIL4
PSMD12ENSG00000197170.51602.399702095.54780-0.387104.241503.52150HepG2PUF60
PSMD12ENSG00000197170.51172.871101474.73540-0.330404.565603.81160HepG2PUS1
PSMD12ENSG00000197170.53323.224001344.185201.305809.701808.43580HepG2RAVER1
PSMD12ENSG00000197170.52106.751101733.472300.281302.829801.96380HepG2RBM15
PSMD12ENSG00000197170.52605.393602109.903100.304203.871803.28620HepG2RBM22
PSMD12ENSG00000197170.52225.128901665.176800.418104.939804.06230HepG2RBM25
PSMD12ENSG00000197170.51458.497201756.08540-0.267903.013402.37410HepG2RECQL
PSMD12ENSG00000197170.51001.952201173.58470-0.228102.188401.60390HepG2SAFB2
PSMD12ENSG00000197170.52446.511101731.916700.498303.745702.95660HepG2SF3A3
PSMD12ENSG00000197170.51648.377602009.11720-0.285504.731803.85270HepG2SLBP
PSMD12ENSG00000197170.52702.883501875.645500.527003.332202.47070HepG2SNRNP70
PSMD12ENSG00000197170.54199.975902383.038600.8175036.2577034.98370HepG2SRFBP1
PSMD12ENSG00000197170.53178.088101841.030100.7875028.7057027.53600HepG2SRSF1
PSMD12ENSG00000197170.51325.171301743.61460-0.395905.847804.89720HepG2SRSF7
PSMD12ENSG00000197170.51912.918201497.807600.352804.900704.20480HepG2SRSF9
PSMD12ENSG00000197170.5807.237001659.66340-1.0398017.0537015.51590HepG2TARDBP
PSMD12ENSG00000197170.51304.054201041.900500.323702.451901.50610HepG2TFIP11
PSMD12ENSG00000197170.5751.113101280.50250-0.7696013.4671012.50500HepG2TIAL1
PSMD12ENSG00000197170.51039.576101291.96780-0.313603.756803.12180HepG2TRIM56
PSMD12ENSG00000197170.51807.539601311.275900.463004.627503.82540HepG2U2AF1
PSMD12ENSG00000197170.52140.971801482.895700.5297011.7228010.62510HepG2UTP3
PSMD12ENSG00000197170.51168.216501530.07860-0.389302.292201.62650HepG2XRN2
PSMD12ENSG00000197170.52645.526101689.246300.6471023.3608022.15840HepG2ZNF622
PSMD12ENSG00000197170.52711.472202054.629300.400104.374302.85040K562AARS
PSMD12ENSG00000197170.52856.694102394.017800.254801.960001.40750K562AKAP8L
PSMD12ENSG00000197170.5584.35590884.09000-0.597305.401303.81530K562CCAR1
PSMD12ENSG00000197170.51184.049302711.06700-1.1951028.8736025.67420K562CIRBP
PSMD12ENSG00000197170.52586.041403885.72880-0.587403.498402.27980K562CNOT7
PSMD12ENSG00000197170.53443.329104130.25520-0.262403.308202.09120K562CPEB4
PSMD12ENSG00000197170.51683.648802330.20880-0.468902.913602.11000K562CPSF6
PSMD12ENSG00000197170.57566.837906516.867800.215402.384401.48000K562CELF1
PSMD12ENSG00000197170.51386.772301962.70040-0.501106.474904.80100K562DDX3X
PSMD12ENSG00000197170.53290.148402576.245200.352805.373504.09980K562DKC1
PSMD12ENSG00000197170.52337.038703536.67520-0.597705.971604.97520K562EIF2S2
PSMD12ENSG00000197170.51467.686802212.28600-0.592003.239302.11260K562EIF3D
PSMD12ENSG00000197170.51610.152102050.52640-0.348803.141102.26910K562EIF4A3
PSMD12ENSG00000197170.51342.370701710.55420-0.349703.101801.75810K562EXOSC5
PSMD12ENSG00000197170.51534.473002370.69840-0.627604.160903.10950K562FMR1
PSMD12ENSG00000197170.51439.466902009.27920-0.481102.723301.81540K562FTO
PSMD12ENSG00000197170.52847.990002132.459200.417307.301506.38190K562FXR1
PSMD12ENSG00000197170.53364.114702215.765300.602305.189704.15250K562G3BP2
PSMD12ENSG00000197170.53302.494204713.46090-0.513204.086403.16970K562GRSF1
PSMD12ENSG00000197170.51173.174402248.56970-0.9386020.1376018.60770K562HNRNPC
PSMD12ENSG00000197170.51479.954702007.80260-0.440104.812903.25520K562HNRNPF
PSMD12ENSG00000197170.53354.377902526.595500.408803.721602.26660K562HNRNPK
PSMD12ENSG00000197170.52973.967003862.29770-0.377104.469003.08860K562HNRNPL
PSMD12ENSG00000197170.52873.404504071.16910-0.502706.418705.22030K562HSPD1
PSMD12ENSG00000197170.53417.709202540.713000.427702.410601.64860K562KIF1C
PSMD12ENSG00000197170.51658.390302280.19380-0.459404.221002.33640K562LIN28B
PSMD12ENSG00000197170.51492.943102004.61710-0.425204.906602.78960K562LSM11
PSMD12ENSG00000197170.51652.549802171.68310-0.394102.140901.36990K562METAP2
PSMD12ENSG00000197170.51871.784202876.97190-0.6201018.2764016.45980K562MTPAP
PSMD12ENSG00000197170.52786.571101994.996900.482003.461502.45190K562NAA15
PSMD12ENSG00000197170.52451.391203196.71550-0.3830010.960709.61110K562NSUN2
PSMD12ENSG00000197170.51679.756902213.66600-0.398203.098401.56610K562NUSAP1
PSMD12ENSG00000197170.51607.259102316.93000-0.527602.215101.35040K562PABPN1
PSMD12ENSG00000197170.51680.832202195.16910-0.385203.640401.97730K562PHF6
PSMD12ENSG00000197170.52851.912503408.49970-0.257202.012401.31640K562PPIG
PSMD12ENSG00000197170.53010.418002010.212400.582507.809306.54340K562PRPF8
PSMD12ENSG00000197170.51355.814102016.03010-0.572407.077205.51530K562PSIP1
PSMD12ENSG00000197170.53063.146402582.763800.246002.231101.62470K562PTBP1
PSMD12ENSG00000197170.55122.329806026.85860-0.234602.975801.98270K562PUM2
PSMD12ENSG00000197170.52943.404202374.335100.309901.876001.41200K562PUS1
PSMD12ENSG00000197170.53017.776702313.327200.383405.603604.78560K562RBM15
PSMD12ENSG00000197170.51236.451801839.13450-0.572808.261606.54570K562RCC2
PSMD12ENSG00000197170.51767.489902250.52970-0.348603.165601.34630K562RECQL
PSMD12ENSG00000197170.51010.020901743.47430-0.7876011.976509.44740K562SRFBP1
PSMD12ENSG00000197170.53764.940402531.879800.5723010.059108.72400K562SRSF1
PSMD12ENSG00000197170.51335.906901946.94290-0.543403.034501.96790K562SUPV3L1
PSMD12ENSG00000197170.52055.539001673.956900.296202.963402.11100K562SYNCRIP
PSMD12ENSG00000197170.51786.040302562.62110-0.520905.829504.77680K562TARDBP
PSMD12ENSG00000197170.52068.866102471.88660-0.256802.295901.55720K562TIA1
PSMD12ENSG00000197170.51086.923301939.11190-0.8351011.454109.43640K562TIAL1
PSMD12ENSG00000197170.51260.227502059.79700-0.7088010.578608.44590K562TRIM56
PSMD12ENSG00000197170.52906.734502218.636100.389605.139404.04990K562U2AF2
PSMD12ENSG00000197170.52194.240303389.53400-0.6274019.7896018.06490K562UPF1
PSMD12ENSG00000197170.52327.742102900.33550-0.317303.325102.37030K562WDR3
PSMD12ENSG00000197170.54209.760005073.25030-0.269202.434201.63340K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PSMD12 is not available on ENCORE database.





6 RBPs can affect the splicing of PSMD12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPSMD12ENSG00000197170.5chr17-653407216534092865338301653383796534186065342034-0.087000.000000.00000excludedK562AQR
SEPSMD12ENSG00000197170.5chr17-653434516534368865343296653433666534466565344770-0.052000.000010.00013excludedK562AQR
A3SSPSMD12ENSG00000197170.5chr17-6534072165340928653407216534089665341860653419730.051000.000080.00550longerK562PUS1
A3SSPSMD12ENSG00000197170.5chr17-6534072165340928653407216534089665341860653419730.052000.000020.00209longerK562U2AF1
RIPSMD12ENSG00000197170.5chr17-6535341865353694653534186535354765353634653536940.069000.000030.00190includedHepG2FTO
RIPSMD12ENSG00000197170.5chr17-6535341865353694653534186535354765353634653536940.068000.000020.00223includedK562BUD13
RIPSMD12ENSG00000197170.5chr17-6535341865353694653534186535354765353634653536940.057000.000030.00073includedK562UTP18
RIPSMD12ENSG00000197170.5chr17-6535341865353694653534186535354765353634653536940.115000.000000.00000includedK562AQR
MXEPSMD12ENSG00000197170.5chr17-6534186065341973653432316534336665338301653383796534345165343601-0.055000.000000.000002includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PSMD12 is not avaliable on ENCORE database.