PRKRIP1

General Information

Gene Name       : PRKRIP1
Gene ID             : ENSG00000128563.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PRKRIP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRKRIP1ENSG00000128563.138.0012.0610.03ENCSR000AEF
HepG2PRKRIP1ENSG00000128563.1312.5011.3211.91ENCSR985KAT
K562PRKRIP1ENSG00000128563.1313.9513.3113.63ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRKRIP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRKRIP1 RNA is bound by 32 proteins.  







eCLIP assay for PRKRIP1 is not avaliable on ENCORE database.





32 proteins are bound to PRKRIP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7102066867102066928+3'-UTR3.786453.95400K562UPF1
chr7102065528102065594+3'-UTR,CDS3.372625.66840K562ZNF622
chr7102065845102065928+3'-UTR,polyA_site3.239895.78757K562UPF1
chr7102065523102065623+3'-UTR,CDS3.203358.23345K562UCHL5
chr7102065561102065643+3'-UTR,CDS4.616303.91454K562PUM1
chr7102065574102065657+3'-UTR,CDS3.081683.85473K562GRWD1
chr7102066948102067010+3'-UTR4.138359.37242K562UPF1
chr7102065530102065590+3'-UTR,CDS5.150847.95223HepG2BCLAF1
chr7102066181102066241+3'-UTR4.528125.85773HepG2PABPN1
chr7102065486102065666+3'-UTR,CDS4.1151513.34751HepG2GRWD1
chr7102036438102036553+3'-UTR,intron-Distal3.147925.13774K562SLTM
chr7102065710102065755+3'-UTR4.568964.82934K562RBM15
chr7102065556102065640+3'-UTR,CDS4.966617.48781HepG2PABPN1
chr7102066384102066453+3'-UTR3.106093.02335HepG2LSM11
chr7102036437102036457+3'-UTR,intron-Distal4.103353.71613K562UCHL5
chr7102036424102036547+3'-UTR,intron-Distal3.082523.60267K562FUS
chr7102065529102065606+3'-UTR,CDS4.804505.52476K562BUD13
chr7102065568102065614+3'-UTR,CDS3.854783.02253K562MTPAP
chr7102016298102016348+5'-UTR3.197465.75243K562ZNF622
chr7102004544102004591+5'-UTR3.763383.03048HepG2GTF2F1
chr7102004390102004497+5'-UTR4.0520415.96425HepG2PRPF4
chr7102004407102004489+5'-UTR3.673286.21712K562GRWD1
chr7102004412102004491+5'-UTR3.8620811.53741HepG2GTF2F1
chr7102004413102004492+5'-UTR3.742163.22046K562AKAP8L
chr7102004401102004474+5'-UTR3.8457216.83256K562AQR
chr7102004362102004400+5'-UTR4.4676627.12110K562AQR
chr7102004514102004598+5'-UTR5.290359.91068HepG2PRPF4
chr7102004356102004362+5'-UTR5.6882716.94745K562AQR
chr7102004359102004496+5'-UTR3.6916111.58486HepG2NCBP2
chr7102004670102004737+5'-UTR,intron-Proximal3.184984.79706HepG2PRPF4
chr7102004413102004491+5'-UTR3.0976810.10869HepG2PPIG
chr7102016297102016354+5'-UTR4.093566.81811K562UCHL5
chr7102047881102047908+CDS,intron-Distal3.961594.76554HepG2BCLAF1
chr7102047908102047948+CDS,intron-Distal,intron-Proximal3.665306.67313HepG2BCLAF1
chr7102045094102045130+CDS4.837626.04243HepG2BCLAF1
chr7102047880102047916+CDS,intron-Distal,intron-Proximal3.744813.22063K562TRA2A
chr7102045088102045131+CDS,intron-Proximal4.048663.48757K562TRA2A
chr7102045128102045215+CDS,intron-Proximal5.0968413.00561K562AQR
chr7102065461102065528+CDS3.235215.65791K562ZNF622
chr7102040025102040091+CDS3.699329.25079K562ZNF622
chr7102047919102047944+CDS,intron-Distal3.944815.37538K562ZNF622
chr7102047896102047946+CDS,intron-Distal,intron-Proximal4.121686.12731K562UCHL5
chr7102065461102065523+CDS3.6937910.13632K562UCHL5
chr7102064484102064594+intron-Distal4.003413.31905K562NONO
chr7102026657102026713+intron-Distal3.049643.42334K562KHDRBS1
chr7102018788102018841+intron-Distal3.338074.74790HepG2ILF3
chr7102030049102030095+intron-Distal4.731647.61274HepG2ILF3
chr7102050490102050560+intron-Distal3.730125.37814HepG2HNRNPM
chr7102022290102022335+intron-Distal3.640685.55877HepG2HNRNPL
chr7102058940102059031+intron-Distal3.918553.71677HepG2HNRNPL
chr7102032678102032742+intron-Distal3.966179.93088K562HNRNPL
chr7102056083102056153+intron-Distal4.1371711.94999HepG2QKI
chr7102031332102031406+intron-Distal3.210093.22046K562AKAP8L
chr7102058941102059070+intron-Distal5.3824011.57313K562QKI
chr7102017524102017629+intron-Distal3.752593.21228K562TIA1
chr7102024214102024291+intron-Distal3.337373.19404HepG2PTBP1
chr7102024329102024400+intron-Distal4.457737.96448K562PTBP1
chr7102018281102018336+intron-Distal5.8261514.35812HepG2PCBP2
chr7102018622102018681+intron-Distal4.096739.53530K562ILF3
chr7102052718102052836+intron-Distal4.366694.18168HepG2ILF3
chr7102018782102018831+intron-Distal3.116094.68595K562ILF3
chr7102018623102018695+intron-Distal3.612184.51399HepG2ILF3
chr7102032742102032837+intron-Distal5.6692613.73667K562HNRNPL
chr7102021233102021328+intron-Distal4.9219818.34426HepG2PTBP1
chr7102020207102020249+intron-Distal3.822713.08967K562KHDRBS1
chr7102021270102021330+intron-Distal4.7123619.65615K562PTBP1
chr7102014648102014785+intron-Distal3.046347.20875K562KHSRP
chr7102018276102018330+intron-Distal3.742864.36528HepG2U2AF2
chr7102032221102032272+intron-Distal3.284833.14580K562ILF3
chr7102032662102032741+intron-Distal3.7616212.12046HepG2HNRNPL
chr7102020745102020801+intron-Distal3.207166.02099K562HNRNPL
chr7102056154102056239+intron-Distal5.1046112.44638HepG2QKI
chr7102032741102032805+intron-Distal4.1566211.54014HepG2HNRNPL
chr7102052647102052772+intron-Distal4.245824.75225K562ILF3
chr7102017617102017741+intron-Distal3.796948.39916K562HNRNPK
chr7102020801102020854+intron-Distal,intron-Proximal4.038108.46806K562HNRNPL
chr7102058953102059033+intron-Distal6.3317815.78113HepG2QKI
chr7102016773102016840+intron-Proximal3.094314.57444K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRKRIP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRKRIP1 is not available on ENCORE database.

  • 66 RBPs can affect the levels of PRKRIP1.  








The Knockdown/knockout RNA-Seq assay for PRKRIP1 is not available on ENCORE database.





66 RBPs can affect the gene expression of PRKRIP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRKRIP1ENSG00000128563.9611.47210462.275500.403402.220301.51270HepG2ASCC1
PRKRIP1ENSG00000128563.9791.04020667.115000.245701.929601.33720HepG2AUH
PRKRIP1ENSG00000128563.9439.11440612.82990-0.480903.195602.49040HepG2CKAP4
PRKRIP1ENSG00000128563.9723.87240517.242000.484803.894302.58930HepG2CPSF7
PRKRIP1ENSG00000128563.9752.08780584.404900.363803.521502.81470HepG2CELF1
PRKRIP1ENSG00000128563.9803.61860459.858700.805206.879305.94040HepG2DDX6
PRKRIP1ENSG00000128563.9434.80510586.34550-0.431402.846102.16000HepG2DKC1
PRKRIP1ENSG00000128563.9725.38910441.931100.714806.042605.18470HepG2EIF2S1
PRKRIP1ENSG00000128563.9768.81240488.317000.654704.984004.12930HepG2EIF4A3
PRKRIP1ENSG00000128563.9694.93230475.576500.547102.900202.19650HepG2EIF4B
PRKRIP1ENSG00000128563.91009.71850765.924200.398604.425903.69730HepG2ETF1
PRKRIP1ENSG00000128563.9711.77680457.127100.638704.540403.69700HepG2G3BP1
PRKRIP1ENSG00000128563.9587.83390483.515500.281702.030501.40920HepG2HNRNPF
PRKRIP1ENSG00000128563.9682.41370463.138400.559104.175803.33300HepG2HNRNPK
PRKRIP1ENSG00000128563.9752.21010572.249200.394404.727303.86270HepG2HNRNPL
PRKRIP1ENSG00000128563.9524.20120723.88260-0.465602.553201.37600HepG2HSPD1
PRKRIP1ENSG00000128563.9429.55560343.489300.322502.041501.40030HepG2ILF2
PRKRIP1ENSG00000128563.9990.59530721.875500.456402.633101.82360HepG2LARP4
PRKRIP1ENSG00000128563.9945.46940493.072600.9391010.682209.41930HepG2MAGOH
PRKRIP1ENSG00000128563.9612.11140451.790500.438002.537901.84390HepG2PABPC4
PRKRIP1ENSG00000128563.9726.15580475.666600.610204.627603.87710HepG2PCBP1
PRKRIP1ENSG00000128563.9406.27470299.926100.437702.947302.18910HepG2PPIL4
PRKRIP1ENSG00000128563.9758.22560630.879600.265201.906501.34390HepG2PUM2
PRKRIP1ENSG00000128563.9749.63120475.732300.655906.236305.26070HepG2RBM25
PRKRIP1ENSG00000128563.9472.40430299.456400.657606.861505.91470HepG2SAFB2
PRKRIP1ENSG00000128563.9675.02450570.332400.243002.045301.42480HepG2SLBP
PRKRIP1ENSG00000128563.9869.92710723.057400.266702.161701.70170HepG2SRFBP1
PRKRIP1ENSG00000128563.9379.66920525.97610-0.470302.252701.81460HepG2SRSF1
PRKRIP1ENSG00000128563.9643.52870475.028700.437904.355403.51310HepG2SRSF7
PRKRIP1ENSG00000128563.9642.23250427.938600.585607.339206.51750HepG2SRSF9
PRKRIP1ENSG00000128563.9879.49270627.793400.486306.226205.51350HepG2SSB
PRKRIP1ENSG00000128563.9617.44510336.042000.877605.928504.99580HepG2SUPV3L1
PRKRIP1ENSG00000128563.9566.78660434.396000.383702.775301.93850HepG2TIA1
PRKRIP1ENSG00000128563.9482.02830326.688800.561104.582003.97270HepG2TIAL1
PRKRIP1ENSG00000128563.9584.00980329.677500.8248011.6965010.65350HepG2TRIM56
PRKRIP1ENSG00000128563.9732.20600581.087500.333402.460601.63940HepG2TUFM
PRKRIP1ENSG00000128563.9451.86260198.476401.1868011.328309.81090HepG2UCHL5
PRKRIP1ENSG00000128563.9562.34100307.580500.870404.788703.45250HepG2UPF2
PRKRIP1ENSG00000128563.9615.63840330.798000.896006.736805.62100HepG2XRN2
PRKRIP1ENSG00000128563.92471.540001275.084200.9547018.1537016.81750K562AQR
PRKRIP1ENSG00000128563.92306.032301287.428800.8408025.9538024.15100K562DDX47
PRKRIP1ENSG00000128563.9681.65400479.723700.506703.818002.22150K562DNAJC21
PRKRIP1ENSG00000128563.9826.19800586.313800.494702.854701.80420K562EIF3D
PRKRIP1ENSG00000128563.9672.16920443.966100.598306.672005.44840K562EIF3G
PRKRIP1ENSG00000128563.9992.07430519.978200.9319013.5669011.68130K562EIF4A3
PRKRIP1ENSG00000128563.92109.722101608.905800.390905.937304.58060K562EIF4G2
PRKRIP1ENSG00000128563.91090.25810826.728200.399102.992902.10170K562FMR1
PRKRIP1ENSG00000128563.9939.88660700.723500.423502.902101.96530K562FTO
PRKRIP1ENSG00000128563.9920.17040540.753100.7668012.1344010.96020K562FXR1
PRKRIP1ENSG00000128563.9783.62710549.244000.512603.377701.78470K562GEMIN5
PRKRIP1ENSG00000128563.91053.64770775.774700.441603.789402.86600K562GPKOW
PRKRIP1ENSG00000128563.91725.291901359.992700.343103.155702.35100K562GRSF1
PRKRIP1ENSG00000128563.9987.36360609.553400.695708.388807.40050K562HNRNPC
PRKRIP1ENSG00000128563.91293.42070737.423300.810509.254507.35640K562HNRNPM
PRKRIP1ENSG00000128563.9861.30650501.049100.7815010.053908.38370K562MAGOH
PRKRIP1ENSG00000128563.9631.37190500.017500.336402.201101.38710K562MATR3
PRKRIP1ENSG00000128563.91278.208801064.243900.264202.452801.69050K562MTPAP
PRKRIP1ENSG00000128563.9620.36090486.807900.349702.387401.76320K562PTBP1
PRKRIP1ENSG00000128563.9860.165401121.66120-0.383002.127301.59450K562RBM15
PRKRIP1ENSG00000128563.9767.42970466.736600.717307.722906.22730K562RBM22
PRKRIP1ENSG00000128563.9875.27020542.848000.689105.259904.13070K562RPS19
PRKRIP1ENSG00000128563.9682.88220438.836800.637904.711303.35670K562RPS3
PRKRIP1ENSG00000128563.9595.04920450.749700.400602.506501.51430K562SRSF5
PRKRIP1ENSG00000128563.9858.06850515.851100.734004.707703.35420K562SUPV3L1
PRKRIP1ENSG00000128563.9945.15950482.979300.968509.756108.29780K562TARDBP
PRKRIP1ENSG00000128563.9738.08560465.894400.663707.172005.75430K562TIA1
PRKRIP1ENSG00000128563.9227.21720328.10250-0.530103.226402.36100K562U2AF2
PRKRIP1ENSG00000128563.91629.809301253.821900.378305.631104.64580K562UPF1
PRKRIP1ENSG00000128563.91273.18120881.521300.530304.293202.78860K562UTP3
PRKRIP1ENSG00000128563.91726.163101115.627700.6296011.021509.46860K562WDR43
PRKRIP1ENSG00000128563.9777.60890556.331000.483003.071201.77650K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRKRIP1 is not available on ENCORE database.





28 RBPs can affect the splicing of PRKRIP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRKRIP1ENSG00000128563.9chr7+102036423102036984102016658102016769102038066102038145-0.359000.000060.00981excludedHepG2G3BP1
SEPRKRIP1ENSG00000128563.9chr7+1020364231020369841020166581020167691020380661020381450.246000.000130.05171includedK562IGF2BP2
SEPRKRIP1ENSG00000128563.9chr7+102036423102036984102016658102016769102038066102038145-0.165000.000070.05026excludedK562UTP3
SEPRKRIP1ENSG00000128563.9chr7+102036423102036984102016658102016769102038066102038145-0.548000.000000.00000excludedHepG2HNRNPK
SEPRKRIP1ENSG00000128563.9chr7+102036423102036984102016658102016769102038066102038145-0.247000.000000.00110excludedHepG2TBRG4
SEPRKRIP1ENSG00000128563.9chr7+1020364231020369841020166581020167691020380661020381450.165000.000460.00731includedHepG2U2AF2
SEPRKRIP1ENSG00000128563.9chr7+102036423102036984102016658102016769102038066102038145-0.255000.000660.04301excludedHepG2AKAP1
SEPRKRIP1ENSG00000128563.9chr7+102038066102038145102016546102016769102039994102040095-0.106000.000910.01128excludedK562AQR
SEPRKRIP1ENSG00000128563.9chr7+102044998102045130102039970102040095102047880102047945-0.072000.002140.02319excludedK562AQR
SEPRKRIP1ENSG00000128563.9chr7+102020931102021064102016658102016769102038066102038145-0.199000.000070.00971excludedK562SUPV3L1
SEPRKRIP1ENSG00000128563.9chr7+102036423102036984102016658102016769102038066102038145-0.229000.001890.08992excludedHepG2NCBP2
SEPRKRIP1ENSG00000128563.9chr7+102020931102021064102016658102016769102036423102036984-0.119000.000000.00009excludedK562LARP4
SEPRKRIP1ENSG00000128563.9chr7+102036423102036984102016658102016769102039994102040095-0.416000.000490.02474excludedHepG2MATR3
SEPRKRIP1ENSG00000128563.9chr7+1020209311020210641020166581020167691020364231020369840.256000.000010.00205includedHepG2HNRNPL
SEPRKRIP1ENSG00000128563.9chr7+1020209311020210641020166651020167691020364231020369840.096000.001170.07160includedK562HNRNPL
SEPRKRIP1ENSG00000128563.9chr7+102036423102036984102016658102016769102038066102038145-0.323000.000190.01958excludedHepG2IGF2BP3
SEPRKRIP1ENSG00000128563.9chr7+1020364231020369841020166581020167691020380661020381450.229000.000380.05217includedK562RBM22
SEPRKRIP1ENSG00000128563.9chr7+102020931102021064102016658102016769102038066102038145-0.266000.000160.00836excludedK562UTP18
SEPRKRIP1ENSG00000128563.9chr7+102038066102038145102016658102016769102039994102040095-0.241000.000140.00787excludedK562HNRNPU
SEPRKRIP1ENSG00000128563.9chr7+1020209311020210641020166651020167691020364231020369840.301000.000080.05525includedK562AARS
SEPRKRIP1ENSG00000128563.9chr7+102038066102038145102016658102016769102039994102040095-0.424000.000030.00250excludedHepG2HNRNPU
SEPRKRIP1ENSG00000128563.9chr7+102036423102036984102016658102016769102038066102038145-0.325000.000040.01049excludedHepG2KHSRP
A3SSPRKRIP1ENSG00000128563.9chr7+102006420102006523102006464102006523102004341102004858-0.452000.000010.00357shorterK562FXR1
A3SSPRKRIP1ENSG00000128563.9chr7+1020478451020479451020478801020479451020449981020451300.073000.000000.00001longerK562AQR
A5SSPRKRIP1ENSG00000128563.9chr7+102004341102004858102004341102004357102006464102006523-0.595000.000070.00966shorterK562RBM15
MXEPRKRIP1ENSG00000128563.9chr7+102020931102021064102036423102036984102016658102016769102038066102038145-0.084000.000000.000472includedK562LARP4
MXEPRKRIP1ENSG00000128563.9chr7+102020931102021064102036423102036984102016658102016769102039994102040095-0.185000.000000.000112includedK562LARP4
MXEPRKRIP1ENSG00000128563.9chr7+102020931102021064102038066102038145102016658102016769102039994102040095-0.114000.000090.017232includedK562LARP4
MXEPRKRIP1ENSG00000128563.9chr7+102020931102021064102036423102036984102016658102016769102038066102038145-0.087000.001350.040022includedK562RBM15
MXEPRKRIP1ENSG00000128563.9chr7+102036423102036984102038066102038145102016658102016769102039994102040095-0.357000.000000.000262includedHepG2EFTUD2
MXEPRKRIP1ENSG00000128563.9chr7+102036423102036984102038066102038145102016658102016769102039994102040095-0.149000.001240.061312includedK562UTP18
MXEPRKRIP1ENSG00000128563.9chr7+102020931102021064102036423102036984102016658102016769102038066102038145-0.123000.000900.059952includedHepG2NOLC1
MXEPRKRIP1ENSG00000128563.9chr7+102036423102036984102038066102038145102016658102016769102039994102040095-0.171000.002640.070342includedHepG2SF3A3
MXEPRKRIP1ENSG00000128563.9chr7+102020931102021064102036423102036984102016658102016769102038066102038145-0.193000.000020.001012includedK562TARDBP
MXEPRKRIP1ENSG00000128563.9chr7+1020399941020400951020450441020451301020166651020167691020478801020479450.059000.002340.055211includedK562SBDS
MXEPRKRIP1ENSG00000128563.9chr7+1020209311020210641020364231020369841020166581020167691020380661020381450.189000.000030.002571includedHepG2HNRNPL
MXEPRKRIP1ENSG00000128563.9chr7+102036423102036984102038066102038145102016658102016769102039994102040095-0.218000.000070.012212includedHepG2SSB
MXEPRKRIP1ENSG00000128563.9chr7+102020931102021064102036423102036984102016658102016769102038066102038145-0.161000.000680.017452includedK562PRPF8
MXEPRKRIP1ENSG00000128563.9chr7+102020931102021064102036423102036984102016658102016769102038066102038145-0.175000.000020.001342includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRKRIP1 is not avaliable on ENCORE database.