PRDM2

General Information

Gene Name       : PRDM2
Gene ID             : ENSG00000116731.22
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRDM2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRDM2ENSG00000116731.2225.3224.5724.95ENCSR000AEF
HepG2PRDM2ENSG00000116731.224.196.275.23ENCSR985KAT
K562PRDM2ENSG00000116731.2214.2514.2514.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRDM2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRDM2 RNA is bound by 21 proteins.  







eCLIP assay for PRDM2 is not avaliable on ENCORE database.





21 proteins are bound to PRDM2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11409958214099636+3'-UTR,5'-UTR,CDS,intron-Distal4.103353.71613K562UCHL5
chr11409963314099685+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.118983.73997K562ZNF622
chr11409965014099688+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.463303.73423K562UCHL5
chr11409542514095643+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.281004.13620K562KHSRP
chr11409853714098597+5'-UTR,intron-Distal3.338823.93901K562KHSRP
chr11410726714107310+CDS,intron-Distal4.431205.33971K562HNRNPK
chr11410723414107275+CDS,intron-Distal5.2529214.08485HepG2PCBP2
chr11410789714107943+CDS,intron-Distal3.428593.63681K562RBM15
chr11410748314107561+CDS,intron-Distal4.6384833.28350K562PTBP1
chr11410749014107549+CDS,intron-Distal5.489897.38423HepG2PCBP2
chr11410728114107424+CDS,intron-Distal4.9840415.63441HepG2HNRNPK
chr11410546014105520+CDS,intron-Distal4.048893.15006K562RBM15
chr11410715014107234+CDS,intron-Distal5.4138919.38064HepG2PCBP2
chr11410727514107334+CDS,intron-Distal5.1866024.79355HepG2PCBP2
chr11410511914105190+CDS,intron-Distal5.012846.29310K562ZNF622
chr11410527414105337+CDS,intron-Distal4.166787.79539K562UCHL5
chr11410744614107548+CDS,intron-Distal4.562399.21479HepG2PTBP1
chr11410492414104990+CDS,intron-Distal3.635406.14048K562ZNF622
chr11410744414107483+CDS,intron-Distal3.285416.52166K562PTBP1
chr11410510614105218+CDS,intron-Distal4.720589.77102K562UCHL5
chr11410723414107331+CDS,intron-Distal4.151938.39471HepG2DDX59
chr11410731014107423+CDS,intron-Distal3.9868913.08149K562HNRNPK
chr11410604814106122+CDS,intron-Distal5.168915.63231K562DDX6
chr11410508714105201+CDS,intron-Distal3.948893.46499K562TRA2A
chr11410538414105437+CDS,intron-Distal3.657606.14048K562ZNF622
chr11410929014109358+CDS,intron-Distal,intron-Proximal3.130403.94654HepG2PRPF8
chr11410537114105435+CDS,intron-Distal3.365833.63681K562RBM15
chr11410537314105428+CDS,intron-Distal3.539306.43326K562UCHL5
chr11410667114106739+CDS,intron-Distal3.693013.73423K562UCHL5
chr11410604914106144+CDS,intron-Distal5.4048912.79926K562LIN28B
chr11410527114105326+CDS,intron-Distal4.387076.61895K562ZNF622
chr11410725814107416+CDS,intron-Distal3.250506.79218K562PCBP1
chr11410636114106435+CDS,intron-Distal3.539304.89070K562UCHL5
chr11410735414107418+CDS,intron-Distal5.6880522.25505HepG2PCBP2
chr11409053214090581+intron-Distal3.609103.02234K562KHSRP
chr11407745514077566+intron-Distal4.466396.10779K562QKI
chr11407650814076597+intron-Distal3.652225.17507HepG2NKRF
chr11411458414114687+intron-Distal4.593987.41617HepG2CSTF2
chr11409019414090258+intron-Distal4.891375.61356K562FMR1
chr11410248914102595+intron-Distal4.961845.39854K562PTBP1
chr11411458214114679+intron-Distal3.694425.79195K562CSTF2T
chr11408989714090000+intron-Distal3.942366.83037K562KHSRP
chr11408119414081294+intron-Distal4.093613.62366HepG2HNRNPM
chr11409019514090281+intron-Distal4.989838.58840K562CSTF2T
chr11410414814104231+intron-Distal4.638904.79321K562RBFOX2
chr11407701714077092+intron-Distal3.831493.66668K562KHSRP
chr11410283014102894+intron-Distal3.239323.46325HepG2SUGP2
chr11411284714112970+intron-Distal,intron-Proximal3.695456.48117K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRDM2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRDM2 is not available on ENCORE database.

  • 67 RBPs can affect the levels of PRDM2.  








The Knockdown/knockout RNA-Seq assay for PRDM2 is not available on ENCORE database.





67 RBPs can affect the gene expression of PRDM2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRDM2ENSG00000116731.18458.46540368.446300.315302.036201.49980HepG2ACO1
PRDM2ENSG00000116731.18455.03670295.044000.625003.774003.05490HepG2DDX3X
PRDM2ENSG00000116731.18379.75540246.802700.621603.788802.74050HepG2EIF3D
PRDM2ENSG00000116731.18465.20290269.233000.788905.398904.50790HepG2EIF4A3
PRDM2ENSG00000116731.18462.16520262.180800.817704.764603.87710HepG2EIF4B
PRDM2ENSG00000116731.18315.50840449.76000-0.511502.822402.00180HepG2EIF4G2
PRDM2ENSG00000116731.18706.67990527.933500.420603.920003.22540HepG2ETF1
PRDM2ENSG00000116731.181020.18760585.670400.800607.729706.51180HepG2FIP1L1
PRDM2ENSG00000116731.18269.65280165.140500.707303.940503.00990HepG2FUBP3
PRDM2ENSG00000116731.18405.78010271.715600.578503.207602.46430HepG2FXR1
PRDM2ENSG00000116731.18370.75190252.018800.556802.908802.22710HepG2G3BP1
PRDM2ENSG00000116731.18365.03020219.744900.732104.491703.34160HepG2GEMIN5
PRDM2ENSG00000116731.18402.22720671.31480-0.739005.764104.86280HepG2GPKOW
PRDM2ENSG00000116731.18442.20480296.756700.575303.602502.87800HepG2HNRNPA1
PRDM2ENSG00000116731.18370.22900255.278800.536202.794802.09290HepG2HNRNPK
PRDM2ENSG00000116731.18433.81880256.158400.760002.801902.12300HepG2IGF2BP2
PRDM2ENSG00000116731.18507.04690240.446901.076304.030202.84680HepG2IGF2BP3
PRDM2ENSG00000116731.18402.82430281.594600.516403.273002.04000HepG2LARP7
PRDM2ENSG00000116731.18505.04490271.810800.893707.395706.33710HepG2MAGOH
PRDM2ENSG00000116731.18433.88770273.320600.666603.800103.07040HepG2MATR3
PRDM2ENSG00000116731.18444.46470258.298700.782903.198402.06710HepG2METAP2
PRDM2ENSG00000116731.18589.05520279.749401.0742010.562109.36420HepG2NCBP2
PRDM2ENSG00000116731.18391.62000234.500800.739806.756905.87330HepG2PCBP1
PRDM2ENSG00000116731.18511.43220360.216300.505602.384701.41730HepG2PCBP2
PRDM2ENSG00000116731.18452.36060238.613900.9227010.467709.53560HepG2PTBP1
PRDM2ENSG00000116731.18672.94390478.195200.492806.201505.38730HepG2PUM1
PRDM2ENSG00000116731.18735.12900477.821500.621407.157906.09720HepG2PUM2
PRDM2ENSG00000116731.18533.78640375.300400.508104.867004.09150HepG2PUS1
PRDM2ENSG00000116731.18518.16040347.576200.576002.379501.72250HepG2RAVER1
PRDM2ENSG00000116731.18743.64430441.250500.752909.768308.93010HepG2RBM22
PRDM2ENSG00000116731.18382.97700234.536500.707305.146104.25250HepG2RBM25
PRDM2ENSG00000116731.18479.32340265.553900.851908.777507.91250HepG2NELFE
PRDM2ENSG00000116731.18360.31080247.328100.542703.336702.66790HepG2RECQL
PRDM2ENSG00000116731.18383.79340240.154400.676304.705503.92690HepG2RPS19
PRDM2ENSG00000116731.18398.51370277.491300.522102.663601.89050HepG2RRP9
PRDM2ENSG00000116731.18351.45730241.025200.544103.014902.03130HepG2SERBP1
PRDM2ENSG00000116731.18933.52410558.740600.740402.532501.88740HepG2SF3A3
PRDM2ENSG00000116731.18381.94560248.426900.620404.565903.83430HepG2SF3B4
PRDM2ENSG00000116731.18458.17270340.539600.428003.477302.76910HepG2SMN1
PRDM2ENSG00000116731.18653.77830498.368800.391503.405702.86730HepG2SRFBP1
PRDM2ENSG00000116731.18404.68670259.304300.642105.063004.47340HepG2SRSF1
PRDM2ENSG00000116731.18352.22120210.958200.739406.644705.85590HepG2SRSF9
PRDM2ENSG00000116731.18609.56780505.803200.269102.232601.66310HepG2SUCLG1
PRDM2ENSG00000116731.18326.57590214.162000.608603.996602.99860HepG2TIA1
PRDM2ENSG00000116731.181494.28910501.048001.5763034.3580032.08230HepG2U2AF1
PRDM2ENSG00000116731.18992.02110472.040201.071403.391202.29470HepG2U2AF2
PRDM2ENSG00000116731.18730.39770478.403000.610407.643206.72850HepG2UTP3
PRDM2ENSG00000116731.18237.55740356.27830-0.584702.680801.96760HepG2XRN2
PRDM2ENSG00000116731.18945.95710544.974600.7955014.9436013.92320HepG2ZNF622
PRDM2ENSG00000116731.182953.932001815.869400.7019010.536409.50180K562AQR
PRDM2ENSG00000116731.181399.178601713.27370-0.292203.260401.94020K562DDX21
PRDM2ENSG00000116731.181975.005402486.76070-0.332405.130704.28130K562DDX47
PRDM2ENSG00000116731.181317.183301009.382900.383903.132702.15760K562EFTUD2
PRDM2ENSG00000116731.182084.738302573.35070-0.303803.896702.78440K562EIF4G2
PRDM2ENSG00000116731.181453.30520972.479900.579509.775508.71940K562FXR1
PRDM2ENSG00000116731.181554.911701892.75890-0.283702.245301.52920K562GPKOW
PRDM2ENSG00000116731.181677.542702073.06160-0.305402.721501.97060K562GRSF1
PRDM2ENSG00000116731.181833.756002247.26540-0.293402.639101.61010K562HNRNPL
PRDM2ENSG00000116731.181750.505102566.99290-0.552306.910005.66200K562HSPD1
PRDM2ENSG00000116731.181880.849801466.824800.358602.065801.32710K562NAA15
PRDM2ENSG00000116731.181203.52440933.769300.366003.442802.06250K562NCBP2
PRDM2ENSG00000116731.181650.185101108.410400.574007.094905.50480K562PCBP2
PRDM2ENSG00000116731.182777.524001799.797900.625907.077205.74480K562PCBP3
PRDM2ENSG00000116731.182168.218801380.482400.6512011.6032010.02180K562POLR2G
PRDM2ENSG00000116731.181476.118702149.25570-0.542006.312004.98680K562PPIG
PRDM2ENSG00000116731.181411.54150982.243600.523005.092304.07630K562PRPF8
PRDM2ENSG00000116731.181438.449501210.354300.249001.906601.33660K562PTBP1
PRDM2ENSG00000116731.183654.323602807.734700.380103.692802.75270K562PUF60
PRDM2ENSG00000116731.183479.910902986.360800.220602.256601.30360K562PUM1
PRDM2ENSG00000116731.182384.751401745.674400.450004.630903.95180K562PUS1
PRDM2ENSG00000116731.181611.213601230.118300.389303.766702.49820K562SAFB
PRDM2ENSG00000116731.182629.101901634.168000.685903.002401.70450K562SNRNP200
PRDM2ENSG00000116731.182509.912301965.662700.352506.938505.53210K562SRPK2
PRDM2ENSG00000116731.181953.761201571.294500.314203.324901.65510K562SRSF9
PRDM2ENSG00000116731.181646.667001384.692900.249902.090601.37620K562SYNCRIP
PRDM2ENSG00000116731.181333.93540892.962800.578905.086203.51500K562U2AF1
PRDM2ENSG00000116731.181342.39440922.114700.541707.279205.98380K562U2AF2
PRDM2ENSG00000116731.181802.787902061.65920-0.193602.185601.54180K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRDM2 is not available on ENCORE database.





15 RBPs can affect the splicing of PRDM2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRDM2ENSG00000116731.18chr1+140956121409566814075855140759821409957214099621-0.084000.002460.04314excludedK562SRSF1
SEPRDM2ENSG00000116731.18chr1+1410491214109326140995721409968314142921141430650.358000.000060.00183includedHepG2U2AF1
SEPRDM2ENSG00000116731.18chr1+141049121410932614099572140996831411300914114574-0.289000.000000.00029excludedK562AKAP8L
SEPRDM2ENSG00000116731.18chr1+1410491214109326140995721409968314113009141145740.243000.000070.00448includedK562FXR1
SEPRDM2ENSG00000116731.18chr1+140995721409968314075855140759821414292114143065-0.126000.001680.02615excludedK562PUS1
SEPRDM2ENSG00000116731.18chr1+141049121410932614099572140996831414292114143065-0.244000.000820.09125excludedK562LARP4
SEPRDM2ENSG00000116731.18chr1+1410491214109326140995721409968314113009141145740.315000.000680.01658includedK562U2AF1
SEPRDM2ENSG00000116731.18chr1+140956121409566814075855140759821409957214099621-0.152000.000010.01393excludedK562ZRANB2
SEPRDM2ENSG00000116731.18chr1+140956121409566814075855140759821409957214099621-0.143000.000060.05106excludedK562HLTF
SEPRDM2ENSG00000116731.18chr1+141049121410932614099572140996831411300914114574-0.291000.000000.00011excludedK562UTP18
SEPRDM2ENSG00000116731.18chr1+1410491214109326140995721409968314113009141145740.312000.000470.01066includedK562U2AF2
SEPRDM2ENSG00000116731.18chr1+141049121410932614099572140996831411300914114574-0.459000.000000.00000excludedK562RBM15
SEPRDM2ENSG00000116731.18chr1+141049121410932614099572140996831411300914114574-0.400000.000000.00000excludedK562AGGF1
SEPRDM2ENSG00000116731.18chr1+1410491214109326140995721409968314113009141145740.298000.000020.00844includedK562SAFB
SEPRDM2ENSG00000116731.18chr1+1409561214095668140758551407598214099572140996830.242000.000080.00562includedK562PTBP1
SEPRDM2ENSG00000116731.18chr1+141049121410932614099572140996831411300914114574-0.370000.000000.00001excludedK562HNRNPC
MXEPRDM2ENSG00000116731.18chr1+14076914140769811409561214095668140758551407598214099572140996830.690000.008190.094191includedK562SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRDM2 is not avaliable on ENCORE database.