PDLIM2

General Information

Gene Name       : PDLIM2
Gene ID             : ENSG00000120913.23
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDLIM2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDLIM2ENSG00000120913.231.032.161.60ENCSR000AEF
HepG2PDLIM2ENSG00000120913.2340.353.2321.79ENCSR985KAT
K562PDLIM2ENSG00000120913.230.660.330.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDLIM2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDLIM2 RNA is bound by 7 proteins.  







eCLIP assay for PDLIM2 is not avaliable on ENCORE database.





7 proteins are bound to PDLIM2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr82244710722447159+3'-UTR,5'-UTR,CDS,intron-Proximal5.690236.02643HepG2DDX3X
chr82245534322455411+3'-UTR,intron-Distal4.125273.94684HepG2CSTF2T
chr82245152722451663+3'-UTR,intron-Distal4.672065.67997HepG2UPF1
chr82245501922455098+3'-UTR,intron-Distal4.833215.41835HepG2DDX59
chr82245133922451453+3'-UTR,CDS,intron-Distal,intron-Proximal3.005556.06364HepG2LARP4
chr82244682722446889+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.140469.76063HepG2DDX3X
chr82244923322449294+intron-Distal,intron-Proximal4.845628.08215HepG2EFTUD2
chr82244314822443245+intron-Distal5.378517.04496HepG2DDX59
chr82244315422443223+intron-Distal4.460444.17937HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDLIM2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDLIM2 is not available on ENCORE database.

  • 98 RBPs can affect the levels of PDLIM2.  








The Knockdown/knockout RNA-Seq assay for PDLIM2 is not available on ENCORE database.





98 RBPs can affect the gene expression of PDLIM2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDLIM2ENSG00000120913.1973.30430242.10290-1.723702.599101.55590HepG2AATF
PDLIM2ENSG00000120913.19276.28290595.66200-1.108306.594305.73710HepG2ACO1
PDLIM2ENSG00000120913.1970.55900140.54290-0.994104.192702.99330HepG2ADAR
PDLIM2ENSG00000120913.19385.481701195.44360-1.632804.436103.78420HepG2AKAP1
PDLIM2ENSG00000120913.19200.28670393.78650-0.975302.956201.88470HepG2AKAP8
PDLIM2ENSG00000120913.19433.69400598.33600-0.464302.349901.63700HepG2AKAP8L
PDLIM2ENSG00000120913.19609.19250187.362701.7010020.1920018.12380HepG2BCLAF1
PDLIM2ENSG00000120913.19250.00400140.684400.829403.040402.41610HepG2BOP1
PDLIM2ENSG00000120913.19249.05480595.38270-1.2574010.173909.06180HepG2CKAP4
PDLIM2ENSG00000120913.19297.08180144.129101.043409.128107.30900HepG2YBX3
PDLIM2ENSG00000120913.1976.53810133.16030-0.798902.678401.61700HepG2CSTF2
PDLIM2ENSG00000120913.19422.24040301.432800.486104.107303.23280HepG2DAZAP1
PDLIM2ENSG00000120913.19280.55550550.83310-0.973307.525706.26400HepG2DDX19B
PDLIM2ENSG00000120913.1969.01440146.66070-1.087503.673102.54890HepG2DDX59
PDLIM2ENSG00000120913.19674.65870358.820100.910803.844102.66020HepG2DDX5
PDLIM2ENSG00000120913.19414.79110136.492801.603504.091402.91500HepG2DHX30
PDLIM2ENSG00000120913.19441.95670569.84840-0.366702.187101.57390HepG2DKC1
PDLIM2ENSG00000120913.19549.29360141.512901.9565011.5609010.20510HepG2DNAJC21
PDLIM2ENSG00000120913.19259.24640140.279400.885907.460206.46070HepG2DNAJC2
PDLIM2ENSG00000120913.19120.59840225.06870-0.900202.977602.04480HepG2EIF3D
PDLIM2ENSG00000120913.19183.023701017.54120-2.475006.992805.92840HepG2EIF4B
PDLIM2ENSG00000120913.19549.61370284.897600.947906.109104.92090HepG2EIF4G2
PDLIM2ENSG00000120913.19415.38500599.50500-0.529305.377304.58740HepG2ETF1
PDLIM2ENSG00000120913.19345.51810581.93520-0.752103.765202.79070HepG2EWSR1
PDLIM2ENSG00000120913.19160.62310465.54100-1.535202.139501.45880HepG2FIP1L1
PDLIM2ENSG00000120913.19516.93710833.37030-0.689003.354102.49260HepG2FUBP3
PDLIM2ENSG00000120913.19378.07360977.95450-1.371103.368902.63890HepG2G3BP1
PDLIM2ENSG00000120913.19543.073601038.90810-0.935802.316601.50540HepG2G3BP2
PDLIM2ENSG00000120913.19362.52950228.214300.667603.755902.56480HepG2GNB2L1
PDLIM2ENSG00000120913.19400.08220146.382601.4505013.4515012.14110HepG2GPKOW
PDLIM2ENSG00000120913.1956.29290208.11180-1.886302.925001.50510HepG2HLTF
PDLIM2ENSG00000120913.19174.27420277.04320-0.668804.053502.95620HepG2HNRNPA2B1
PDLIM2ENSG00000120913.19285.17190126.046401.1778010.812909.51700HepG2HNRNPF
PDLIM2ENSG00000120913.19618.08450139.697202.145409.469708.38370HepG2HNRNPLL
PDLIM2ENSG00000120913.19460.08670124.117601.8901019.7809018.03740HepG2IGF2BP1
PDLIM2ENSG00000120913.19132.63890933.46650-2.815108.061706.45460HepG2IGF2BP3
PDLIM2ENSG00000120913.19187.74750428.30560-1.189804.044002.52560HepG2KRR1
PDLIM2ENSG00000120913.19500.169701060.91250-1.084802.767202.13610HepG2MATR3
PDLIM2ENSG00000120913.1960.24860235.52030-1.966905.746404.27540HepG2METAP2
PDLIM2ENSG00000120913.19695.80550376.306000.886702.674401.87940HepG2MSI2
PDLIM2ENSG00000120913.19333.22270142.512901.225302.741001.77760HepG2MTPAP
PDLIM2ENSG00000120913.19334.10880202.177900.724604.660402.80970HepG2NIP7
PDLIM2ENSG00000120913.19417.31240298.902100.481403.425402.57790HepG2NOL12
PDLIM2ENSG00000120913.19258.09390123.881601.058806.354905.24870HepG2NSUN2
PDLIM2ENSG00000120913.19681.40930229.448901.570208.862007.23430HepG2PABPC1
PDLIM2ENSG00000120913.1967.35630156.25700-1.214006.942005.69670HepG2PARN
PDLIM2ENSG00000120913.19237.08230972.54510-2.0364069.0720066.78380HepG2PCBP1
PDLIM2ENSG00000120913.19617.43950140.805902.1325019.5049017.68450HepG2PPIL4
PDLIM2ENSG00000120913.19439.56070989.62350-1.1708020.6884019.45910HepG2PTBP1
PDLIM2ENSG00000120913.19857.09790285.338501.5867032.6364030.86690HepG2PUF60
PDLIM2ENSG00000120913.19159.14700302.91130-0.928508.414207.49740HepG2PUM1
PDLIM2ENSG00000120913.19396.48380302.682600.389402.236501.63080HepG2PUM2
PDLIM2ENSG00000120913.19827.56040606.698500.447804.741303.97580HepG2PUS1
PDLIM2ENSG00000120913.19670.876201071.73880-0.675803.901403.17640HepG2QKI
PDLIM2ENSG00000120913.1960.58940197.57690-1.705302.711002.01310HepG2RAVER1
PDLIM2ENSG00000120913.19321.08970520.27220-0.696307.196905.90290HepG2RBM15
PDLIM2ENSG00000120913.19180.44220501.07400-1.4735021.9736020.79580HepG2RBM22
PDLIM2ENSG00000120913.19638.12690972.68990-0.608106.782705.76800HepG2RBM25
PDLIM2ENSG00000120913.19443.36580218.954401.017807.279705.57440HepG2RCC2
PDLIM2ENSG00000120913.19282.386501101.33730-1.9635065.8331064.04800HepG2NELFE
PDLIM2ENSG00000120913.19292.975601025.77990-1.8079056.8157054.80220HepG2RECQL
PDLIM2ENSG00000120913.19367.45060135.814701.435803.065502.35230HepG2RPLP0
PDLIM2ENSG00000120913.19120.74280219.05020-0.859303.062602.42010HepG2RPS19
PDLIM2ENSG00000120913.1956.01330161.70410-1.529507.386106.17520HepG2RRP9
PDLIM2ENSG00000120913.19403.11690140.586501.5196023.2242021.60120HepG2SAFB2
PDLIM2ENSG00000120913.19348.52850543.85340-0.641903.716802.93120HepG2SF3A3
PDLIM2ENSG00000120913.19274.58020138.262100.989706.386205.35150HepG2SF3B1
PDLIM2ENSG00000120913.19591.077901030.28550-0.8016014.5836013.39040HepG2SF3B4
PDLIM2ENSG00000120913.19792.00360273.619601.5332043.0153040.95630HepG2SLBP
PDLIM2ENSG00000120913.1979.97930153.84460-0.943803.124102.29270HepG2SNRNP70
PDLIM2ENSG00000120913.19315.35930565.94230-0.8437010.9211010.10420HepG2SRFBP1
PDLIM2ENSG00000120913.19212.948301075.41150-2.3363086.7376084.94430HepG2SRSF1
PDLIM2ENSG00000120913.1974.72120148.80050-0.993803.407402.28580HepG2SRSF3
PDLIM2ENSG00000120913.19396.79520874.91870-1.1408026.7363025.35340HepG2SRSF9
PDLIM2ENSG00000120913.19198.89830427.22960-1.103003.776102.29750HepG2SSRP1
PDLIM2ENSG00000120913.19176.97270966.66740-2.4495079.1625076.70000HepG2TAF15
PDLIM2ENSG00000120913.19654.53500888.18720-0.440404.123003.10980HepG2TIA1
PDLIM2ENSG00000120913.19367.67410153.379601.261203.949603.37450HepG2TIAL1
PDLIM2ENSG00000120913.19306.09010154.772200.983709.374608.43040HepG2TRIM56
PDLIM2ENSG00000120913.1975.96560124.67020-0.714702.620401.88260HepG2UCHL5
PDLIM2ENSG00000120913.191015.22140482.316001.0736027.0545025.33370HepG2UPF1
PDLIM2ENSG00000120913.19404.08230193.197001.064504.886003.53100HepG2UPF2
PDLIM2ENSG00000120913.19446.67340226.068400.982403.581702.32740HepG2XPO5
PDLIM2ENSG00000120913.19330.17050207.790100.668002.721302.00210HepG2XRN2
PDLIM2ENSG00000120913.19143.11350208.65570-0.544002.541301.89280HepG2ZC3H8
PDLIM2ENSG00000120913.191037.34960530.453600.9675025.6364024.39620HepG2ZNF622
PDLIM2ENSG00000120913.1949.5143010.168202.283705.781505.00890K562AGGF1
PDLIM2ENSG00000120913.1938.1560010.580701.850403.142002.44460K562AKAP8L
PDLIM2ENSG00000120913.1918.420603.103902.569102.514401.60190K562BCLAF1
PDLIM2ENSG00000120913.1914.411302.408802.580701.982001.30950K562CPSF6
PDLIM2ENSG00000120913.1944.8390010.199502.136105.130903.65090K562DDX3X
PDLIM2ENSG00000120913.1939.5241010.341201.934204.116402.42630K562DDX6
PDLIM2ENSG00000120913.1920.974904.178902.327402.497401.63310K562EFTUD2
PDLIM2ENSG00000120913.1936.105901.116105.015608.966407.78510K562EIF2S2
PDLIM2ENSG00000120913.1919.185702.446902.970902.897102.02200K562FMR1
PDLIM2ENSG00000120913.1921.636502.072203.384103.897602.79700K562FTO
PDLIM2ENSG00000120913.1928.996602.301503.655105.223504.13890K562GPKOW
PDLIM2ENSG00000120913.1936.157901.487504.603306.617205.44250K562GRSF1
PDLIM2ENSG00000120913.1925.647406.904101.893202.421701.48060K562IGF2BP2
PDLIM2ENSG00000120913.1936.1992012.578101.524902.601101.72400K562MBNL1
PDLIM2ENSG00000120913.1934.7631010.640501.707902.834601.58980K562NCBP2
PDLIM2ENSG00000120913.1943.9282015.083401.542102.308701.43030K562PUM2
PDLIM2ENSG00000120913.1936.0877010.491101.782202.757302.21490K562PUS1
PDLIM2ENSG00000120913.1920.788404.144802.326302.379701.62390K562RPS19
PDLIM2ENSG00000120913.1913.445501.839102.870002.216601.38800K562TIAL1
PDLIM2ENSG00000120913.1920.759204.169702.315602.526401.55910K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDLIM2 is not available on ENCORE database.





4 RBPs can affect the splicing of PDLIM2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPDLIM2ENSG00000120913.19chr8+2244906322449181224470642244725422451245224518110.106000.000000.00001includedHepG2HNRNPK
SEPDLIM2ENSG00000120913.19chr8+2244906322449181224471082244725422451245224518110.096000.000280.04958includedHepG2TIA1
SEPDLIM2ENSG00000120913.19chr8+224490632244918122447064224472542245124522451811-0.115000.002160.07430excludedHepG2MATR3
SEPDLIM2ENSG00000120913.19chr8+2244906322449181224471082244725422451245224518110.145000.000020.01353includedHepG2SLTM

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PDLIM2 is not avaliable on ENCORE database.