LSM3

General Information

Gene Name       : LSM3
Gene ID             : ENSG00000170860.3
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: LSM3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LSM3ENSG00000170860.321.3618.9220.14ENCSR000AEF
HepG2LSM3ENSG00000170860.310.6220.9215.77ENCSR985KAT
K562LSM3ENSG00000170860.335.1437.1336.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LSM3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LSM3 RNA is bound by 15 proteins.  







eCLIP assay for LSM3 is not avaliable on ENCORE database.





15 proteins are bound to LSM3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr31423965214239722+3'-UTR4.705726.05696K562IGF2BP1
chr31423971514239728+3'-UTR3.5905221.21324K562PABPC4
chr31423968114239715+3'-UTR3.964339.52223K562PABPC4
chr31423963614239681+3'-UTR4.416975.77902K562PABPC4
chr31423972214239784+3'-UTR3.851795.48238K562IGF2BP1
chr31423953414239651+3'-UTR,CDS,intron-Proximal3.8985014.14620K562PUM1
chr31423972814239775+3'-UTR3.3248918.10282K562PABPC4
chr31423962014239693+3'-UTR3.094934.26844K562DDX55
chr31423971414239793+3'-UTR3.8782510.01865HepG2SUB1
chr31423955014239608+CDS3.899663.80299HepG2GRWD1
chr31422544914225499+CDS4.1710542.78550K562PABPC4
chr31422552114225579+CDS,intron-Proximal3.768386.42898K562AQR
chr31422305814223171+CDS,intron-Proximal3.761605.96568HepG2GRWD1
chr31422312314223170+CDS3.5327427.13868K562ZNF622
chr31422544514225512+CDS3.562934.91547HepG2GRWD1
chr31423953414239604+CDS,intron-Proximal4.220396.22576HepG2BCLAF1
chr31422547814225512+CDS3.5506514.09305K562GRWD1
chr31422550914225534+CDS,intron-Proximal3.592296.51943K562PUM1
chr31422551214225533+CDS,intron-Proximal4.246413.31827HepG2GRWD1
chr31422543614225508+CDS,intron-Proximal3.024488.24652K562ZNF800
chr31423953314239595+CDS,intron-Proximal3.548549.43153K562NIPBL
chr31422308114223123+CDS3.3609831.29943K562ZNF622
chr31422305914223129+CDS,intron-Proximal3.1318522.30541K562UCHL5
chr31422544414225539+CDS,intron-Proximal3.256605.63425HepG2BCLAF1
chr31422543614225522+CDS,intron-Proximal3.122064.20283K562APOBEC3C
chr31422551214225525+CDS4.008977.97054K562GRWD1
chr31423953414239550+CDS,intron-Proximal4.184343.34184HepG2GRWD1
chr31423954514239613+CDS3.205719.48063K562GRWD1
chr31423872414238841+intron-Distal4.953844.99795K562QKI
chr31423252914232599+intron-Distal3.775054.31658K562EXOSC5
chr31423879014238854+intron-Distal4.333803.80778HepG2QKI
chr31423375714233822+intron-Distal4.607845.12361K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LSM3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LSM3 is not available on ENCORE database.

  • 119 RBPs can affect the levels of LSM3.  








The Knockdown/knockout RNA-Seq assay for LSM3 is not available on ENCORE database.





119 RBPs can affect the gene expression of LSM3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LSM3ENSG00000170860.3395.41950578.88660-0.549903.171202.16090HepG2ABCF1
LSM3ENSG00000170860.3398.95720549.10170-0.460804.059703.14450HepG2AKAP8L
LSM3ENSG00000170860.3370.63750591.13550-0.673502.729601.94990HepG2ASCC1
LSM3ENSG00000170860.3358.53770669.75600-0.901507.857206.43770HepG2BCLAF1
LSM3ENSG00000170860.3560.53830707.09030-0.335102.000401.48420HepG2BOP1
LSM3ENSG00000170860.3626.75390869.13380-0.471702.687501.73010HepG2CCAR1
LSM3ENSG00000170860.3451.04540546.42200-0.276701.940201.37010HepG2CKAP4
LSM3ENSG00000170860.3364.70740649.14370-0.831807.996106.87940HepG2CPSF6
LSM3ENSG00000170860.3325.61180476.79110-0.550203.678902.40690HepG2CPSF7
LSM3ENSG00000170860.3723.992901055.61270-0.544007.780406.80500HepG2CELF1
LSM3ENSG00000170860.3937.841201135.15440-0.275503.307102.50910HepG2DAZAP1
LSM3ENSG00000170860.3454.77100684.41390-0.589702.099801.54680HepG2DDX3X
LSM3ENSG00000170860.3537.67320757.74350-0.495002.586401.83470HepG2DDX55
LSM3ENSG00000170860.3492.19810737.15160-0.582702.676701.71740HepG2DDX59
LSM3ENSG00000170860.3199.08010587.72840-1.561808.923307.87860HepG2DDX6
LSM3ENSG00000170860.3285.31390448.27430-0.651805.833904.84680HepG2DNAJC21
LSM3ENSG00000170860.3335.91620444.28360-0.403403.190502.49830HepG2DNAJC2
LSM3ENSG00000170860.3268.82650491.17500-0.869606.309104.65060HepG2AGO1
LSM3ENSG00000170860.3314.40090565.19340-0.846104.049303.34170HepG2EIF2S1
LSM3ENSG00000170860.3805.531601119.80330-0.475206.832505.62270HepG2EIF4G1
LSM3ENSG00000170860.3612.411401072.71720-0.8087010.406408.87670HepG2EIF4G2
LSM3ENSG00000170860.3626.33160944.36040-0.592406.171705.33410HepG2ETF1
LSM3ENSG00000170860.3277.04420650.26420-1.230906.206804.68760HepG2FTO
LSM3ENSG00000170860.3410.00000735.84460-0.843806.248205.31200HepG2GPKOW
LSM3ENSG00000170860.3458.56250719.08860-0.649103.743201.92170HepG2GTF2F1
LSM3ENSG00000170860.3359.90130521.77620-0.535805.189903.89910HepG2HDGF
LSM3ENSG00000170860.3754.119901043.18560-0.468106.027304.74310HepG2HNRNPA2B1
LSM3ENSG00000170860.3347.56240503.38810-0.534403.487402.71510HepG2HNRNPC
LSM3ENSG00000170860.3458.07150757.01810-0.724809.937008.68410HepG2HNRNPF
LSM3ENSG00000170860.3646.891801034.07260-0.6767013.5029012.11990HepG2HNRNPL
LSM3ENSG00000170860.3457.78310702.23100-0.617304.814604.00800HepG2HNRNPLL
LSM3ENSG00000170860.3500.74280745.45650-0.574105.340704.36780HepG2IGF2BP1
LSM3ENSG00000170860.3351.28390594.26320-0.758503.456202.71000HepG2IGF2BP2
LSM3ENSG00000170860.3335.20980499.59520-0.575706.053304.57120HepG2KIF1C
LSM3ENSG00000170860.3399.08720648.76940-0.701003.179002.50260HepG2NCBP2
LSM3ENSG00000170860.3650.143501125.61080-0.791909.155607.79690HepG2NOL12
LSM3ENSG00000170860.3410.89600622.66960-0.599704.475603.52910HepG2NSUN2
LSM3ENSG00000170860.3336.55830577.94560-0.780103.506902.69970HepG2PABPC4
LSM3ENSG00000170860.3335.88290556.88370-0.729408.571007.60010HepG2PCBP1
LSM3ENSG00000170860.3467.79720722.20980-0.626503.716502.52010HepG2PCBP2
LSM3ENSG00000170860.3335.35000446.01620-0.411402.809202.06720HepG2PPIL4
LSM3ENSG00000170860.3241.26710566.66490-1.2319020.2205019.00240HepG2PTBP1
LSM3ENSG00000170860.3618.250501074.46300-0.797408.101507.15360HepG2PUF60
LSM3ENSG00000170860.3829.714801140.55360-0.459007.880206.98540HepG2PUM1
LSM3ENSG00000170860.3698.338201139.74310-0.7067010.684409.41490HepG2PUM2
LSM3ENSG00000170860.3171.92560556.65260-1.6950036.6457034.89130HepG2PUS1
LSM3ENSG00000170860.3425.58470613.68020-0.528004.498603.72920HepG2QKI
LSM3ENSG00000170860.3404.49780696.88600-0.784804.207103.34700HepG2RAVER1
LSM3ENSG00000170860.3526.76040710.47640-0.431603.662802.69120HepG2RBM15
LSM3ENSG00000170860.3406.68650556.96630-0.453703.104402.39440HepG2RBM25
LSM3ENSG00000170860.3517.47580630.63120-0.285301.794501.33870HepG2NELFE
LSM3ENSG00000170860.3453.63870587.36970-0.372702.748802.13400HepG2RECQL
LSM3ENSG00000170860.3491.68360815.34740-0.729707.324006.29160HepG2RPLP0
LSM3ENSG00000170860.3342.90750684.66980-0.997607.756306.24470HepG2RPS10
LSM3ENSG00000170860.3302.50760426.70570-0.496303.138602.48970HepG2RPS19
LSM3ENSG00000170860.3419.67000578.42060-0.462902.191301.48370HepG2RRP9
LSM3ENSG00000170860.31045.21150593.038100.817506.282305.24130HepG2SF3A3
LSM3ENSG00000170860.3419.97250695.06400-0.726907.023305.94230HepG2SF3B1
LSM3ENSG00000170860.3463.90790589.94450-0.346702.430001.87090HepG2SF3B4
LSM3ENSG00000170860.3655.212801030.16800-0.6528012.3806011.07890HepG2SLBP
LSM3ENSG00000170860.3483.21670710.89870-0.557003.319802.26050HepG2SMNDC1
LSM3ENSG00000170860.3444.14840678.49750-0.611303.872401.95780HepG2SND1
LSM3ENSG00000170860.3298.99710773.38270-1.3711013.0427011.36110HepG2SNRNP70
LSM3ENSG00000170860.3562.78460891.54180-0.663703.606003.05730HepG2SRFBP1
LSM3ENSG00000170860.31229.01010615.785300.9969024.4459023.34530HepG2SRSF1
LSM3ENSG00000170860.3664.808001060.83220-0.6742011.9107010.73880HepG2SRSF5
LSM3ENSG00000170860.3450.84900743.71140-0.722105.646904.71040HepG2SRSF7
LSM3ENSG00000170860.3260.97190500.98350-0.9409012.7958011.76450HepG2SRSF9
LSM3ENSG00000170860.3372.66310651.27390-0.805404.797803.20880HepG2SUB1
LSM3ENSG00000170860.3859.475501206.49570-0.489308.335107.35300HepG2SUCLG1
LSM3ENSG00000170860.3476.82400754.37310-0.661804.336303.51730HepG2SUPV3L1
LSM3ENSG00000170860.3429.18780553.52210-0.367002.514101.97640HepG2TAF15
LSM3ENSG00000170860.3346.33220684.48520-0.9829011.289609.97590HepG2TARDBP
LSM3ENSG00000170860.3355.08770202.117900.812903.179602.03770HepG2TBRG4
LSM3ENSG00000170860.3330.65720508.57930-0.621105.311204.16540HepG2TIA1
LSM3ENSG00000170860.3467.28210699.84690-0.582703.174901.60380HepG2TRA2A
LSM3ENSG00000170860.3667.475601049.64560-0.653108.181006.55030HepG2TUFM
LSM3ENSG00000170860.3698.86600500.077600.482803.171102.50120HepG2U2AF1
LSM3ENSG00000170860.3615.800401110.99430-0.851308.664207.15260HepG2UBE2L3
LSM3ENSG00000170860.3278.49420445.66630-0.678304.447003.48360HepG2UCHL5
LSM3ENSG00000170860.3344.99170525.93170-0.608305.962604.99950HepG2UPF1
LSM3ENSG00000170860.3369.43880578.42760-0.646808.291607.47630HepG2ZNF622
LSM3ENSG00000170860.3389.66780696.36100-0.837606.601804.49290HepG2ZRANB2
LSM3ENSG00000170860.32153.203503179.65640-0.562403.910702.43240K562ABCF1
LSM3ENSG00000170860.33165.704302212.392700.5168012.9890011.85680K562AGGF1
LSM3ENSG00000170860.33217.595002431.128500.404304.569803.23350K562AKAP8
LSM3ENSG00000170860.33557.204102302.105600.6277010.131608.77880K562AKAP8L
LSM3ENSG00000170860.33339.790902415.483100.467308.724806.97790K562ATP5C1
LSM3ENSG00000170860.31923.455002248.30910-0.225102.592301.66680K562BCLAF1
LSM3ENSG00000170860.3675.08010928.60600-0.460003.660602.41050K562CCAR1
LSM3ENSG00000170860.32339.381803595.69250-0.620103.594902.35640K562CNOT7
LSM3ENSG00000170860.31411.227701705.67720-0.273402.569201.55650K562CSTF2
LSM3ENSG00000170860.33367.281602477.163500.442808.441706.75760K562DKC1
LSM3ENSG00000170860.32270.628102730.55490-0.266102.596901.89520K562EIF2S2
LSM3ENSG00000170860.31912.106102225.99820-0.219302.249501.52660K562EIF3G
LSM3ENSG00000170860.31478.833201790.93790-0.276302.762001.60970K562EIF4B
LSM3ENSG00000170860.31354.502001729.36210-0.352503.460402.02260K562EXOSC5
LSM3ENSG00000170860.32929.999702285.363300.358402.653101.82200K562FIP1L1
LSM3ENSG00000170860.31380.718901956.56720-0.502906.326805.45980K562HNRNPC
LSM3ENSG00000170860.31372.140701747.19190-0.348603.189901.95880K562HNRNPF
LSM3ENSG00000170860.33393.750702607.808000.379902.730101.50650K562HNRNPK
LSM3ENSG00000170860.33542.819901879.589800.9144014.0252011.51760K562HNRNPM
LSM3ENSG00000170860.32081.519402534.93540-0.284303.106402.16290K562HNRNPU
LSM3ENSG00000170860.33904.248803098.683800.333302.419301.67170K562HSPD1
LSM3ENSG00000170860.33671.778202443.072000.5877010.056008.20830K562KIF1C
LSM3ENSG00000170860.31513.069902108.88340-0.479002.391401.53240K562KRR1
LSM3ENSG00000170860.31377.722901744.58300-0.340603.305601.59160K562LSM11
LSM3ENSG00000170860.33074.144002338.651400.394404.329002.89720K562MAK16
LSM3ENSG00000170860.33669.193902736.862900.422805.153303.83380K562MBNL1
LSM3ENSG00000170860.31858.423302333.23230-0.328305.431404.32130K562MTPAP
LSM3ENSG00000170860.33256.841401918.346000.763508.123206.29990K562NAA15
LSM3ENSG00000170860.31937.119202592.45110-0.4204011.4852010.10780K562NSUN2
LSM3ENSG00000170860.32460.862903454.39720-0.489302.857401.60170K562PABPC1
LSM3ENSG00000170860.33477.850602594.117000.422904.234403.19020K562PPIG
LSM3ENSG00000170860.32941.654501654.576500.8301010.494209.02620K562PRPF8
LSM3ENSG00000170860.31293.405301754.26050-0.439704.330903.16170K562PSIP1
LSM3ENSG00000170860.31453.172202665.80570-0.8754020.0386018.32630K562PTBP1
LSM3ENSG00000170860.33397.432402224.484000.6109013.7757012.44810K562RBM15
LSM3ENSG00000170860.31231.079601600.50170-0.378603.982002.78990K562RCC2
LSM3ENSG00000170860.32070.105002690.31970-0.378103.308502.10080K562NELFE
LSM3ENSG00000170860.31909.935403065.57920-0.682602.935301.57500K562SFPQ
LSM3ENSG00000170860.31047.268501517.23630-0.534805.805604.16420K562SRFBP1
LSM3ENSG00000170860.32099.625502620.78210-0.319905.946704.64030K562SRPK2
LSM3ENSG00000170860.32031.863201692.386000.263602.464101.69100K562SYNCRIP
LSM3ENSG00000170860.32123.267302551.35950-0.265002.489301.71910K562TIA1
LSM3ENSG00000170860.31059.359801687.30930-0.671507.538705.93060K562TIAL1
LSM3ENSG00000170860.31227.257201792.51030-0.546506.647405.03380K562TRIM56
LSM3ENSG00000170860.33506.912702391.665800.552105.576003.91330K562U2AF1
LSM3ENSG00000170860.33524.542702469.647000.513008.884207.43530K562U2AF2
LSM3ENSG00000170860.32282.547202748.82930-0.268203.861003.02440K562UPF1
LSM3ENSG00000170860.33374.107402314.781700.543502.676401.41280K562UTP18
LSM3ENSG00000170860.31722.776802352.08900-0.449205.754604.47030K562WDR3
LSM3ENSG00000170860.32762.909202445.881500.175702.139801.38840K562WDR43
LSM3ENSG00000170860.33392.934304301.00240-0.342103.578502.57300K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LSM3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LSM3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LSM3 is not avaliable on ENCORE database.