GUCD1

General Information

Gene Name       : GUCD1
Gene ID             : ENSG00000138867.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GUCD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GUCD1ENSG00000138867.1641.0460.7950.91ENCSR000AEF
HepG2GUCD1ENSG00000138867.16112.6467.5190.08ENCSR985KAT
K562GUCD1ENSG00000138867.1642.0133.8037.91ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GUCD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GUCD1 RNA is bound by 11 proteins.  







eCLIP assay for GUCD1 is not avaliable on ENCORE database.





11 proteins are bound to GUCD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr222493708824937153-3'-UTR,intron-Distal3.549656.06342K562UPF1
chr222493721724937287-3'-UTR,intron-Distal3.5025711.71665HepG2UPF1
chr222493819424938230-3'-UTR,intron-Distal4.307804.25109HepG2AKAP1
chr222493686224936999-3'-UTR,intron-Distal4.3986715.01187K562UPF1
chr222493755524937601-3'-UTR,intron-Distal4.409536.86851K562FAM120A
chr222493806824938119-3'-UTR,intron-Distal3.590374.51787HepG2AKAP1
chr222493719824937292-3'-UTR,intron-Distal4.312019.56196HepG2AKAP1
chr222493783624937878-3'-UTR,intron-Distal4.4030912.42207K562UPF1
chr222493700524937134-3'-UTR,intron-Distal3.904597.93263HepG2AKAP1
chr222493824224938273-3'-UTR,intron-Distal,intron-Proximal4.227573.72123HepG2AKAP1
chr222493789724937915-3'-UTR,intron-Distal3.717704.87320K562UPF1
chr222493770424937759-3'-UTR,intron-Distal3.764188.76110HepG2UPF1
chr222493685524936900-3'-UTR,intron-Distal3.663523.77005HepG2AKAP1
chr222493701024937056-3'-UTR,intron-Distal3.778206.84689K562UPF1
chr222493735524937428-3'-UTR,intron-Distal4.9490513.02031K562UPF1
chr222493683924936914-3'-UTR,intron-Distal4.138018.42654HepG2UPF1
chr222493817924938368-3'-UTR,intron-Distal,intron-Proximal5.5269535.57758HepG2UPF1
chr222493781824937895-3'-UTR,intron-Distal3.739616.30427K562FAM120A
chr222493850724938580-3'-UTR,intron-Distal,intron-Proximal3.297675.33003HepG2UPF1
chr222493874224938806-3'-UTR,intron-Distal,intron-Proximal3.545375.05294K562UPF1
chr222493728724937336-3'-UTR,intron-Distal3.913929.53397HepG2UPF1
chr222493756124937593-3'-UTR,intron-Distal5.360409.60749K562UPF1
chr222493700024937088-3'-UTR,intron-Distal6.0078216.02117HepG2UPF1
chr222493806124938146-3'-UTR,intron-Distal6.1296717.22118HepG2UPF1
chr222493887824938976-3'-UTR,intron-Distal,intron-Proximal3.9514912.37558HepG2UPF1
chr222493819324938251-3'-UTR,intron-Distal4.387628.85840K562UPF1
chr222493728124937333-3'-UTR,intron-Distal5.8224212.33273K562UPF1
chr222493825124938335-3'-UTR,intron-Distal,intron-Proximal4.8402312.67045K562UPF1
chr222495091624950998-5'-UTR,CDS,intron-Distal,intron-Proximal3.953436.67587HepG2DDX3X
chr222493989024939980-CDS,intron-Distal,intron-Proximal3.829025.37252K562YBX3
chr222493980924939875-CDS,intron-Distal,intron-Proximal3.105703.89258HepG2YBX3
chr222494483524944891-CDS,intron-Distal,intron-Proximal3.255576.46344HepG2PRPF8
chr222494488124944942-CDS,intron-Distal,intron-Proximal3.424795.32728HepG2DDX3X
chr222494381424943899-CDS,intron-Distal,intron-Proximal4.831153.62536K562AQR
chr222493981124939890-CDS,intron-Distal3.220275.79072K562YBX3
chr222494483924944910-CDS,intron-Distal,intron-Proximal5.425218.52745HepG2AQR
chr222494396824944043-CDS,intron-Distal,intron-Proximal3.533076.27275HepG2DDX3X
chr222494494224944970-CDS,intron-Distal,intron-Proximal4.105274.82666HepG2DDX3X
chr222493995124940021-CDS,intron-Distal,intron-Proximal3.929243.72981HepG2BUD13
chr222494266724942709-intron-Distal3.891514.09469HepG2XPO5
chr222494306524943119-intron-Distal,intron-Proximal4.472706.35159HepG2RBFOX2
chr222493963524939735-intron-Distal,intron-Proximal3.139635.37989HepG2HNRNPK
chr222494383924943856-intron-Distal,intron-Proximal5.468786.38747HepG2AQR
chr222493947624939611-intron-Distal5.4648712.41855HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GUCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GUCD1 is not available on ENCORE database.

  • 98 RBPs can affect the levels of GUCD1.  








The Knockdown/knockout RNA-Seq assay for GUCD1 is not available on ENCORE database.





98 RBPs can affect the gene expression of GUCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GUCD1ENSG00000138867.121491.079302119.24220-0.507206.013704.49470HepG2AATF
GUCD1ENSG00000138867.121597.117302620.09060-0.7141023.9246022.53480HepG2ACO1
GUCD1ENSG00000138867.121194.698905818.90390-2.2841070.8605068.76380HepG2AKAP1
GUCD1ENSG00000138867.122987.078504049.21490-0.438909.936708.76970HepG2AUH
GUCD1ENSG00000138867.121806.578901439.814900.327302.152801.61990HepG2BOP1
GUCD1ENSG00000138867.121699.288502190.05850-0.366004.113303.19720HepG2CALR
GUCD1ENSG00000138867.121926.562804574.22240-1.2475029.2858027.16310HepG2CIRBP
GUCD1ENSG00000138867.121765.332402619.41900-0.5693017.4385016.08120HepG2CKAP4
GUCD1ENSG00000138867.121854.366303095.74340-0.739404.032903.10350HepG2CNOT7
GUCD1ENSG00000138867.121802.048501321.783900.447104.073203.25350HepG2CPSF6
GUCD1ENSG00000138867.123634.141202865.784200.342603.573402.31980HepG2CPSF7
GUCD1ENSG00000138867.122362.665001889.011700.322704.240402.97960HepG2YBX3
GUCD1ENSG00000138867.122478.534702886.00780-0.219602.406001.79930HepG2CELF1
GUCD1ENSG00000138867.123000.234102423.161500.308104.077403.08750HepG2DDX19B
GUCD1ENSG00000138867.121840.426002337.85800-0.345103.236502.50660HepG2DDX21
GUCD1ENSG00000138867.123351.651805573.96460-0.7338010.379309.23820HepG2DDX3X
GUCD1ENSG00000138867.125739.152904301.051100.416004.838103.15430HepG2DDX47
GUCD1ENSG00000138867.123825.576704788.39850-0.323902.158101.60600HepG2DDX6
GUCD1ENSG00000138867.122281.051301788.949400.350503.321202.25170HepG2DHX30
GUCD1ENSG00000138867.122075.144802506.69030-0.272603.738002.97360HepG2DKC1
GUCD1ENSG00000138867.122358.647901838.540300.359306.605405.65800HepG2DNAJC2
GUCD1ENSG00000138867.122732.543504602.95790-0.7523010.871609.74440HepG2EIF2S1
GUCD1ENSG00000138867.122029.820204952.83410-1.2869019.6739017.95570HepG2EIF4B
GUCD1ENSG00000138867.123917.834103061.451500.355707.048305.82350HepG2EIF4G1
GUCD1ENSG00000138867.123798.517802932.658400.373103.656002.72720HepG2EIF4G2
GUCD1ENSG00000138867.123960.140904649.21090-0.231403.835103.14740HepG2ETF1
GUCD1ENSG00000138867.122537.806903514.19090-0.469604.110803.18740HepG2FIP1L1
GUCD1ENSG00000138867.122698.882803772.94120-0.483306.833905.63200HepG2FUBP3
GUCD1ENSG00000138867.121817.372902527.87020-0.476103.003901.84200HepG2FUS
GUCD1ENSG00000138867.123468.234805132.61750-0.565506.749805.69860HepG2FXR1
GUCD1ENSG00000138867.123866.072404761.06600-0.300402.052101.47580HepG2G3BP1
GUCD1ENSG00000138867.121901.572901498.222900.343802.222101.64480HepG2GPKOW
GUCD1ENSG00000138867.122985.802902501.374500.255303.513402.42330HepG2HDGF
GUCD1ENSG00000138867.123826.478502681.669600.512803.709301.94080HepG2HNRNPD
GUCD1ENSG00000138867.123357.554901919.250100.8068026.9514025.06010HepG2HNRNPF
GUCD1ENSG00000138867.121972.512504821.45260-1.2894035.3411033.14030HepG2HNRNPK
GUCD1ENSG00000138867.122273.319101429.792800.668904.640403.84650HepG2HNRNPLL
GUCD1ENSG00000138867.121520.186202424.45950-0.6734011.7683010.04910HepG2HNRNPM
GUCD1ENSG00000138867.122924.586604197.26610-0.521204.355302.80520HepG2HSPD1
GUCD1ENSG00000138867.123825.298001889.896201.0172016.0120014.42530HepG2IGF2BP1
GUCD1ENSG00000138867.123925.318004839.45220-0.302002.281101.66170HepG2IGF2BP2
GUCD1ENSG00000138867.122509.119304541.88820-0.856103.697302.55940HepG2IGF2BP3
GUCD1ENSG00000138867.122367.001402113.528100.163302.113901.46340HepG2ILF2
GUCD1ENSG00000138867.123623.598204867.78790-0.425802.981901.93500HepG2KHSRP
GUCD1ENSG00000138867.123298.137802395.027800.4615013.5973011.55390HepG2KIF1C
GUCD1ENSG00000138867.121917.511702349.53120-0.293102.521301.44200HepG2LARP7
GUCD1ENSG00000138867.123674.422305163.08910-0.490704.508803.72110HepG2MATR3
GUCD1ENSG00000138867.122218.160301458.469800.604804.319303.09450HepG2MTPAP
GUCD1ENSG00000138867.123644.250005284.66120-0.536205.698104.80460HepG2NCBP2
GUCD1ENSG00000138867.122515.541701267.873400.9884019.1908017.44900HepG2NSUN2
GUCD1ENSG00000138867.121774.076702048.00710-0.207202.140401.38780HepG2PARN
GUCD1ENSG00000138867.123530.629804960.11160-0.4904010.190209.14150HepG2PCBP1
GUCD1ENSG00000138867.122000.875101614.290000.309603.265701.92530HepG2PKM
GUCD1ENSG00000138867.122842.913201845.480000.6233010.288308.91320HepG2PPIL4
GUCD1ENSG00000138867.122080.230602572.40590-0.306404.423303.47080HepG2PRPF4
GUCD1ENSG00000138867.121085.328101400.06900-0.367402.636301.84680HepG2PRPF8
GUCD1ENSG00000138867.124164.263005046.88580-0.277302.283701.77680HepG2PTBP1
GUCD1ENSG00000138867.124646.902302668.717300.8000036.8601035.10360HepG2PUS1
GUCD1ENSG00000138867.122713.331505466.35630-1.0105031.6638029.91300HepG2QKI
GUCD1ENSG00000138867.123973.299203379.620400.233402.224401.44550HepG2RBM15
GUCD1ENSG00000138867.121680.018103885.84450-1.2098053.1943051.48420HepG2RBM22
GUCD1ENSG00000138867.123656.619204960.89800-0.440106.512305.51740HepG2RBM25
GUCD1ENSG00000138867.122213.982902833.18220-0.355803.131102.07250HepG2RBM27
GUCD1ENSG00000138867.122787.835005616.87650-1.0106026.7014025.37280HepG2NELFE
GUCD1ENSG00000138867.124001.149505231.03580-0.386707.174606.25060HepG2RECQL
GUCD1ENSG00000138867.123194.183402067.761600.627308.871707.75640HepG2RPLP0
GUCD1ENSG00000138867.121354.053701899.43660-0.488306.056305.18810HepG2RPS19
GUCD1ENSG00000138867.121799.708702612.89480-0.537906.428905.24040HepG2RPS2
GUCD1ENSG00000138867.122064.156302667.25230-0.369803.415602.21980HepG2RPS5
GUCD1ENSG00000138867.122520.741701842.610900.4520010.646809.51010HepG2SAFB2
GUCD1ENSG00000138867.123233.019001415.141901.1918029.3710027.34710HepG2SF3B1
GUCD1ENSG00000138867.123644.551605254.84190-0.527909.170808.19090HepG2SF3B4
GUCD1ENSG00000138867.123672.583102816.473300.3828010.102408.89210HepG2SLBP
GUCD1ENSG00000138867.121764.267202148.74240-0.284403.292502.60130HepG2SMN1
GUCD1ENSG00000138867.122207.399404388.85550-0.9915054.2560052.77330HepG2SRFBP1
GUCD1ENSG00000138867.122124.052205484.76120-1.3686050.1473048.68610HepG2SRSF1
GUCD1ENSG00000138867.122015.437601522.898000.404202.673401.69180HepG2SRSF3
GUCD1ENSG00000138867.123076.008001885.659700.7059020.6037019.02660HepG2SRSF7
GUCD1ENSG00000138867.122926.476304462.01100-0.6085014.8225013.72700HepG2SRSF9
GUCD1ENSG00000138867.122858.228303298.27680-0.206603.033402.38760HepG2SUCLG1
GUCD1ENSG00000138867.122357.362104929.48430-1.0643038.0080036.23800HepG2TAF15
GUCD1ENSG00000138867.122038.912501393.929100.548505.805304.81120HepG2TARDBP
GUCD1ENSG00000138867.122644.823602028.522100.382607.080406.25100HepG2TRIM56
GUCD1ENSG00000138867.123618.299002869.663800.334303.850102.80050HepG2TUFM
GUCD1ENSG00000138867.12730.288401067.57470-0.547804.021303.10670HepG2UCHL5
GUCD1ENSG00000138867.122363.756503024.22920-0.355506.948106.07270HepG2UTP3
GUCD1ENSG00000138867.121609.144402539.28630-0.658105.261403.82350HepG2XRCC6
GUCD1ENSG00000138867.123835.130703445.064300.154602.260001.75050HepG2ZNF622
GUCD1ENSG00000138867.12608.94550909.38010-0.578605.641203.88680K562AARS
GUCD1ENSG00000138867.12554.68080744.40300-0.424403.060301.70650K562CIRBP
GUCD1ENSG00000138867.121223.694301516.56810-0.309603.846703.09650K562DDX47
GUCD1ENSG00000138867.12957.14780676.948500.499604.427603.38920K562EIF4A3
GUCD1ENSG00000138867.121315.35770992.005700.406903.481502.52150K562FIP1L1
GUCD1ENSG00000138867.12517.49000863.81270-0.739207.063705.13420K562FKBP4
GUCD1ENSG00000138867.12983.05800703.990200.481605.525904.71170K562FXR1
GUCD1ENSG00000138867.12222.14210395.11350-0.830805.245704.20100K562G3BP2
GUCD1ENSG00000138867.12964.324901310.33800-0.442304.612903.23640K562HNRNPA1
GUCD1ENSG00000138867.12786.94670995.14260-0.338602.483501.91440K562HNRNPC
GUCD1ENSG00000138867.12512.11670693.63470-0.437702.719401.49980K562HNRNPK
GUCD1ENSG00000138867.12389.13090591.41750-0.603903.548202.47720K562KRR1
GUCD1ENSG00000138867.12895.10180728.443300.297102.107801.31190K562MATR3
GUCD1ENSG00000138867.12979.21710709.222600.465304.690303.84780K562PTBP1
GUCD1ENSG00000138867.121107.43730695.971200.670002.664801.39460K562SFPQ
GUCD1ENSG00000138867.12224.88630387.84070-0.786303.573201.82850K562TAF15
GUCD1ENSG00000138867.12927.12690703.631200.397802.839402.12300K562TARDBP
GUCD1ENSG00000138867.12841.73180678.747700.310402.133101.42240K562TIA1
GUCD1ENSG00000138867.121137.755201320.86580-0.215302.248501.47830K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GUCD1 is not available on ENCORE database.





6 RBPs can affect the splicing of GUCD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGUCD1ENSG00000138867.12chr22-249509162495110424944884249449692495158224951827-0.396000.000000.01140excludedHepG2BUD13
SEGUCD1ENSG00000138867.12chr22-249448842494496924943875249440412495158224951903-0.397000.000000.00000excludedHepG2U2AF1
SEGUCD1ENSG00000138867.12chr22-249398092494005124938365249390652494288124942973-0.081000.000050.00215excludedHepG2HNRNPK
SEGUCD1ENSG00000138867.12chr22-2495091624951104249448842494496924951582249518270.317000.000030.00389includedHepG2NCBP2
SEGUCD1ENSG00000138867.12chr22-249398092494005124936405249390682494288124942973-0.110000.000520.03534excludedHepG2NCBP2
SEGUCD1ENSG00000138867.12chr22-2495091624951104249448842494496924951582249518270.452000.000000.00000includedHepG2MATR3
SEGUCD1ENSG00000138867.12chr22-249509162495110424944884249449692495158224951827-0.219000.004190.07736excludedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GUCD1 is not avaliable on ENCORE database.