FCHSD1

General Information

Gene Name       : FCHSD1
Gene ID             : ENSG00000197948.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FCHSD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FCHSD1ENSG00000197948.102.006.084.04ENCSR000AEF
HepG2FCHSD1ENSG00000197948.109.544.467.00ENCSR985KAT
K562FCHSD1ENSG00000197948.1014.919.1612.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FCHSD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FCHSD1 RNA is bound by 9 proteins.  







eCLIP assay for FCHSD1 is not avaliable on ENCORE database.





9 proteins are bound to FCHSD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5141023932141024069-3'-UTR,CDS,intron-Distal,intron-Proximal4.845628.08215HepG2EFTUD2
chr5141020409141020466-3'-UTR,intron-Distal,intron-Proximal3.595144.50550K562UPF1
chr5141018912141018969-3'-UTR,intron-Distal4.302664.07810K562UPF1
chr5141019297141019349-3'-UTR,intron-Distal4.543407.12356K562XRCC6
chr5141027054141027120-CDS,intron-Distal,intron-Proximal3.907157.16374K562AQR
chr5141028788141028876-CDS,intron-Distal,intron-Proximal4.531788.09084HepG2PPIG
chr5141029367141029456-CDS,intron-Distal,intron-Proximal4.512858.52787K562AQR
chr5141025700141025784-CDS,intron-Distal,intron-Proximal4.278257.40437K562DDX24
chr5141027056141027093-CDS,intron-Distal,intron-Proximal4.296994.67299K562DDX24
chr5141027055141027136-CDS,intron-Distal,intron-Proximal3.440953.99381K562BUD13
chr5141025358141025435-CDS,intron-Distal,intron-Proximal4.655754.97342HepG2PPIG
chr5141026116141026181-CDS,intron-Distal,intron-Proximal5.116076.83960K562AQR
chr5141029088141029155-CDS,intron-Distal,intron-Proximal5.170015.40008K562SF3B4
chr5141025674141025758-CDS,intron-Distal3.395833.43213K562UCHL5
chr5141026969141027039-CDS,intron-Distal4.324214.46002K562DDX24
chr5141025729141025801-CDS,intron-Distal,intron-Proximal5.278567.63570K562AQR
chr5141028961141029015-CDS,intron-Distal,intron-Proximal4.960776.16445HepG2PPIG
chr5141024620141024697-CDS,intron-Distal4.051066.22817K562DDX24
chr5141029064141029131-CDS,intron-Distal,intron-Proximal5.266336.22530K562AQR
chr5141024016141024100-intron-Distal,intron-Proximal5.019435.58150K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FCHSD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FCHSD1 is not available on ENCORE database.

  • 86 RBPs can affect the levels of FCHSD1.  








The Knockdown/knockout RNA-Seq assay for FCHSD1 is not available on ENCORE database.





86 RBPs can affect the gene expression of FCHSD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FCHSD1ENSG00000197948.6476.99010631.55630-0.405002.167401.33090HepG2ABCF1
FCHSD1ENSG00000197948.6580.32650471.930000.298202.185601.63180HepG2ACO1
FCHSD1ENSG00000197948.6859.84730618.417200.475403.002901.92170HepG2AKAP8
FCHSD1ENSG00000197948.6592.45350474.174600.321202.361801.64750HepG2AKAP8L
FCHSD1ENSG00000197948.6491.93000372.860400.399701.993201.32220HepG2ASCC1
FCHSD1ENSG00000197948.6750.40520527.800000.507605.817104.88310HepG2AUH
FCHSD1ENSG00000197948.6508.01840271.973700.901305.777704.40190HepG2BCCIP
FCHSD1ENSG00000197948.6774.28760556.366200.476702.634701.68680HepG2CCAR1
FCHSD1ENSG00000197948.6224.39760315.38250-0.491002.491601.62810HepG2DDX24
FCHSD1ENSG00000197948.6603.22680431.653900.482702.844802.21080HepG2DDX3X
FCHSD1ENSG00000197948.6519.98880267.424800.959206.555305.42550HepG2DDX55
FCHSD1ENSG00000197948.6662.54790370.890300.836906.921305.97940HepG2DDX6
FCHSD1ENSG00000197948.6352.43630451.51760-0.357402.249401.62850HepG2DKC1
FCHSD1ENSG00000197948.6464.38680297.486800.642405.927204.93050HepG2DNAJC21
FCHSD1ENSG00000197948.6427.20680294.885100.534704.879504.05290HepG2DNAJC2
FCHSD1ENSG00000197948.6496.72500356.455800.478602.615602.03920HepG2EIF2S1
FCHSD1ENSG00000197948.6599.65540393.882000.606303.983703.22080HepG2EIF4A3
FCHSD1ENSG00000197948.6889.40870606.004800.553406.786705.91420HepG2ETF1
FCHSD1ENSG00000197948.6584.78150461.189100.342402.072501.35110HepG2EWSR1
FCHSD1ENSG00000197948.6396.13990272.866100.537702.945401.73640HepG2FAM120A
FCHSD1ENSG00000197948.6866.67420637.681800.442602.437601.71220HepG2FIP1L1
FCHSD1ENSG00000197948.6514.49100381.157200.432702.563501.80570HepG2FUBP3
FCHSD1ENSG00000197948.6578.68270368.709400.650204.602303.75300HepG2G3BP1
FCHSD1ENSG00000197948.6544.03980443.690000.294102.185601.34500HepG2HNRNPA2B1
FCHSD1ENSG00000197948.6506.18910334.077800.599404.182503.34290HepG2HNRNPC
FCHSD1ENSG00000197948.6578.90540412.098900.490204.839103.92440HepG2HNRNPF
FCHSD1ENSG00000197948.6602.15010373.513500.688905.554504.59130HepG2HNRNPK
FCHSD1ENSG00000197948.6615.04350439.673400.484204.357203.52490HepG2HNRNPL
FCHSD1ENSG00000197948.6517.24480405.802500.350002.333001.66590HepG2IGF2BP1
FCHSD1ENSG00000197948.6575.69740374.760400.619204.254103.43330HepG2IGF2BP2
FCHSD1ENSG00000197948.6486.62570338.991300.521505.082004.11340HepG2ILF2
FCHSD1ENSG00000197948.6641.28990409.288100.647803.834103.09410HepG2NCBP2
FCHSD1ENSG00000197948.6665.20740478.663200.474702.275701.58430HepG2NOL12
FCHSD1ENSG00000197948.6622.39250407.426800.611202.893701.98430HepG2PABPC1
FCHSD1ENSG00000197948.6491.38850364.417700.431202.258501.60060HepG2PABPC4
FCHSD1ENSG00000197948.6504.91170295.998700.770308.611807.35960HepG2PPIL4
FCHSD1ENSG00000197948.6424.11570334.982000.340302.089801.40940HepG2PRPF4
FCHSD1ENSG00000197948.6762.19680484.747900.652807.958806.84730HepG2PUM2
FCHSD1ENSG00000197948.6920.79510608.322000.597907.066005.78060HepG2RBM15
FCHSD1ENSG00000197948.6691.89700506.503800.449904.011403.41750HepG2RBM22
FCHSD1ENSG00000197948.6534.74500389.265100.458003.057202.35220HepG2RBM25
FCHSD1ENSG00000197948.6644.62340443.890300.538204.482803.64280HepG2RPLP0
FCHSD1ENSG00000197948.6417.50130296.999600.491202.114301.56970HepG2RPS19
FCHSD1ENSG00000197948.6298.43820203.964200.549002.020101.33880HepG2RRP9
FCHSD1ENSG00000197948.6440.70660295.538600.576405.231304.39610HepG2SAFB2
FCHSD1ENSG00000197948.6438.24090321.518100.446702.466401.79760HepG2SF3B1
FCHSD1ENSG00000197948.6537.67850438.244200.294902.413601.75230HepG2SLBP
FCHSD1ENSG00000197948.6441.96500344.639700.358702.506301.88960HepG2SMN1
FCHSD1ENSG00000197948.6542.47910357.748200.600502.843702.05240HepG2SNRNP70
FCHSD1ENSG00000197948.61424.98800572.070101.3166045.5879044.20110HepG2SRFBP1
FCHSD1ENSG00000197948.6279.36400430.37160-0.623405.146104.55250HepG2SRSF1
FCHSD1ENSG00000197948.6572.88470451.235600.344302.956602.31090HepG2SRSF5
FCHSD1ENSG00000197948.6573.64120404.864000.502605.030704.13590HepG2SRSF7
FCHSD1ENSG00000197948.6517.45410350.123600.563505.575204.83910HepG2SRSF9
FCHSD1ENSG00000197948.6314.43570496.67960-0.659606.854206.11590HepG2SSB
FCHSD1ENSG00000197948.6441.72930266.189100.730603.715002.94780HepG2SUPV3L1
FCHSD1ENSG00000197948.6412.78560322.440800.356302.046201.60290HepG2TIAL1
FCHSD1ENSG00000197948.6473.23150325.357000.540404.951904.24140HepG2TRIM56
FCHSD1ENSG00000197948.6294.11920157.226800.903505.638404.54710HepG2UCHL5
FCHSD1ENSG00000197948.6398.58680262.034800.605002.778502.05220HepG2XRN2
FCHSD1ENSG00000197948.6691.37980531.292800.379903.883903.26530HepG2ZNF622
FCHSD1ENSG00000197948.6731.172001033.17570-0.498804.005903.32490K562AQR
FCHSD1ENSG00000197948.6846.80400622.933200.442903.798102.87950K562CPSF6
FCHSD1ENSG00000197948.6746.93760550.493300.440202.480901.49760K562DDX3X
FCHSD1ENSG00000197948.6639.22280469.313600.445702.774501.86070K562EFTUD2
FCHSD1ENSG00000197948.61124.17490703.971300.6752010.937909.65310K562EIF2S2
FCHSD1ENSG00000197948.6723.80910554.595100.384102.069301.33190K562FIP1L1
FCHSD1ENSG00000197948.6707.75490537.267800.397502.460101.59920K562FTO
FCHSD1ENSG00000197948.6455.56080598.12910-0.392802.959502.33670K562FXR1
FCHSD1ENSG00000197948.6221.52450338.96970-0.613703.001702.26030K562G3BP2
FCHSD1ENSG00000197948.6745.89190594.732300.326602.046301.35990K562GPKOW
FCHSD1ENSG00000197948.6900.93670607.011000.569605.672304.84790K562HNRNPC
FCHSD1ENSG00000197948.6840.06980542.121700.631806.590504.74240K562HNRNPF
FCHSD1ENSG00000197948.6752.80460495.578700.603104.061402.71970K562IGF2BP2
FCHSD1ENSG00000197948.6907.05480615.775100.558704.658502.65510K562LIN28B
FCHSD1ENSG00000197948.6728.14960541.400600.427403.233001.54710K562LSM11
FCHSD1ENSG00000197948.6732.29610580.531700.335002.095701.33290K562METAP2
FCHSD1ENSG00000197948.6966.06550597.752700.692506.258203.84940K562NUSAP1
FCHSD1ENSG00000197948.6826.32670592.677400.479403.915302.17670K562PHF6
FCHSD1ENSG00000197948.61146.41660841.495800.446003.367001.62080K562PKM
FCHSD1ENSG00000197948.6797.49550629.624100.340902.225501.49180K562PPIG
FCHSD1ENSG00000197948.61036.29020544.265700.9289014.1789011.80510K562PSIP1
FCHSD1ENSG00000197948.61126.902001473.49970-0.386903.705502.76390K562PUF60
FCHSD1ENSG00000197948.61261.650301567.64610-0.313303.268302.10470K562PUM1
FCHSD1ENSG00000197948.6659.84950496.652500.409803.076602.02430K562RCC2
FCHSD1ENSG00000197948.61455.797801011.986100.524508.390307.02950K562SF3A3
FCHSD1ENSG00000197948.6695.01700470.804900.561804.509703.11190K562SRFBP1
FCHSD1ENSG00000197948.6485.88510673.17160-0.470404.040103.04300K562SYNCRIP
FCHSD1ENSG00000197948.61001.62040501.636600.997506.588905.45460K562TARDBP
FCHSD1ENSG00000197948.6698.97100483.911400.530404.765103.64630K562TIA1
FCHSD1ENSG00000197948.6772.43300523.482800.561204.261903.08060K562TIAL1
FCHSD1ENSG00000197948.6633.80140475.096900.415702.737101.65260K562TRA2A
FCHSD1ENSG00000197948.6802.84310556.222600.529404.525903.24980K562TRIM56
FCHSD1ENSG00000197948.61134.57910930.396000.286102.187301.40970K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FCHSD1 is not available on ENCORE database.





22 RBPs can affect the splicing of FCHSD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFCHSD1ENSG00000197948.6chr5-141021963141022070141021268141021324141022567141022655-0.646000.000010.00032excludedK562SRSF1
SEFCHSD1ENSG00000197948.6chr5-141028031141028102141027534141027663141028523141028587-0.235000.005270.07696excludedK562SF3B4
SEFCHSD1ENSG00000197948.6chr5-141024425141024509141024139141024257141024586141024715-0.227000.001640.03115excludedHepG2U2AF1
SEFCHSD1ENSG00000197948.6chr5-141021963141022070141021268141021324141022567141022655-0.518000.000170.04766excludedK562PCBP1
SEFCHSD1ENSG00000197948.6chr5-141021963141022070141021268141021324141022567141022655-0.269000.009700.07931excludedK562AQR
SEFCHSD1ENSG00000197948.6chr5-141021963141022070141021268141021324141022567141022655-0.304000.000040.01490excludedK562DROSHA
SEFCHSD1ENSG00000197948.6chr5-141027875141027993141027534141027663141028523141028587-0.153000.000450.06618excludedK562LARP4
SEFCHSD1ENSG00000197948.6chr5-1410219631410220701410212681410213241410225671410226550.455000.000010.01200includedK562ZRANB2
SEFCHSD1ENSG00000197948.6chr5-141027875141027993141027534141027663141028523141028587-0.149000.000050.00730excludedK562HNRNPUL1
SEFCHSD1ENSG00000197948.6chr5-141021963141022070141021268141021324141022567141022655-0.185000.001710.09916excludedHepG2TIAL1
SEFCHSD1ENSG00000197948.6chr5-141021963141022070141021268141021324141022567141022655-0.203000.000400.06405excludedK562EIF4G2
SEFCHSD1ENSG00000197948.6chr5-141021963141022070141021268141021324141022567141022655-0.578000.000220.03634excludedK562RBM22
SEFCHSD1ENSG00000197948.6chr5-141021963141022070141021268141021324141022567141022655-0.171000.000580.05946excludedK562CPSF6
SEFCHSD1ENSG00000197948.6chr5-141021963141022070141021268141021324141022567141022655-0.296000.000120.02383excludedK562ZC3H8
SEFCHSD1ENSG00000197948.6chr5-141028031141028102141027534141027663141028523141028587-0.120000.001940.03312excludedK562HNRNPC
A3SSFCHSD1ENSG00000197948.6chr5-1410225671410227471410225671410226551410237841410240050.122000.005840.03314longerK562AQR
RIFCHSD1ENSG00000197948.6chr5-141025653141026289141025653141025758141026169141026289-0.157000.006640.09011excludedHepG2PCBP2
RIFCHSD1ENSG00000197948.6chr5-1410256531410262891410256531410257581410261691410262890.220000.010320.09679includedHepG2PCBP1
RIFCHSD1ENSG00000197948.6chr5-141025653141026289141025653141025758141026169141026289-0.422000.000150.01478excludedK562EIF3G
RIFCHSD1ENSG00000197948.6chr5-1410256531410262891410256531410257581410261691410262890.317000.000000.00010includedHepG2RBM22
MXEFCHSD1ENSG00000197948.6chr5-1410289611410290971410299251410299711410287381410288751410305861410306840.159000.001570.024771includedK562DROSHA
MXEFCHSD1ENSG00000197948.6chr5-141027534141027663141027875141027993141026964141027087141028523141028587-0.122000.000020.000972includedK562DROSHA
MXEFCHSD1ENSG00000197948.6chr5-141027534141027663141027875141028102141026964141027087141028523141028587-0.076000.009010.082082includedK562DROSHA
MXEFCHSD1ENSG00000197948.6chr5-1410219631410220701410225671410226551410212681410213241410237841410240050.282000.001310.023311includedK562SRSF1
MXEFCHSD1ENSG00000197948.6chr5-1410219631410220701410225671410227471410212681410213241410237841410240050.314000.011050.068571includedK562AQR
MXEFCHSD1ENSG00000197948.6chr5-1410219631410220701410225671410226551410212681410213241410237841410240050.270000.000700.073951includedK562PCBP1
MXEFCHSD1ENSG00000197948.6chr5-1410278751410279931410280311410281021410275341410276631410285231410285870.142000.000010.030171includedK562SLBP
MXEFCHSD1ENSG00000197948.6chr5-1410219631410220701410225671410226551410212681410213241410237841410240050.245000.001150.068351includedK562TRA2A
MXEFCHSD1ENSG00000197948.6chr5-141021963141022070141022567141022655141021268141021324141023784141024005-0.269000.000010.027872includedK562ZRANB2
MXEFCHSD1ENSG00000197948.6chr5-1410219631410220701410225671410226551410212681410213241410237841410240050.156000.003570.098931includedK562SAFB
MXEFCHSD1ENSG00000197948.6chr5-1410219631410220701410225671410226841410212681410213241410237841410240050.300000.000920.044261includedK562SAFB
MXEFCHSD1ENSG00000197948.6chr5-1410219631410220701410225671410226551410212681410213241410237841410240050.293000.000300.029951includedK562RBM22
MXEFCHSD1ENSG00000197948.6chr5-1410219631410220701410225671410226551410212681410213241410237841410240050.494000.000690.078501includedK562TBRG4
MXEFCHSD1ENSG00000197948.6chr5-141026169141026289141026701141026797141025653141025758141026964141027087-0.218000.002970.092742includedK562HNRNPU
MXEFCHSD1ENSG00000197948.6chr5-1410219631410220701410225671410226551410212681410213241410237841410240050.189000.000090.015501includedK562CPSF6
MXEFCHSD1ENSG00000197948.6chr5-1410289611410290971410299251410299711410287381410288751410305861410306840.128000.008410.086691includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FCHSD1 is not avaliable on ENCORE database.