ECHDC1

General Information

Gene Name       : ECHDC1
Gene ID             : ENSG00000093144.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ECHDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ECHDC1ENSG00000093144.1877.9458.3668.15ENCSR000AEF
HepG2ECHDC1ENSG00000093144.1838.1170.6354.37ENCSR985KAT
K562ECHDC1ENSG00000093144.1863.8670.3567.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ECHDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ECHDC1 RNA is bound by 20 proteins.  







eCLIP assay for ECHDC1 is not avaliable on ENCORE database.





20 proteins are bound to ECHDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6127648202127648293-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.083208.08603HepG2BCLAF1
chr6127611247127611363-3'-UTR,CDS,intron-Distal,intron-Proximal4.451574.25741HepG2G3BP1
chr6127648134127648197-3'-UTR,CDS,intron-Distal,intron-Proximal3.867077.58784HepG2BCLAF1
chr6127648130127648198-3'-UTR,CDS,intron-Distal,intron-Proximal3.731226.62597HepG2GRWD1
chr6127611373127611430-3'-UTR,CDS,intron-Distal3.110733.69214K562SF3B4
chr6127648260127648321-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.372323.05068HepG2U2AF2
chr6127648198127648291-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.844616.62597HepG2GRWD1
chr6127610803127610855-3'-UTR,intron-Distal,intron-Proximal4.113713.76686K562IGF2BP1
chr6127637066127637129-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.079377.53537HepG2U2AF2
chr6127635926127636019-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.4173723.52517HepG2PRPF8
chr6127610157127610243-3'-UTR,intron-Distal5.0095232.23385K562QKI
chr6127664474127664539-5'-UTR,intron-Distal,intron-Proximal4.702325.86954K562UCHL5
chr6127664595127664655-5'-UTR,intron-Distal,intron-Proximal4.344554.72838K562UCHL5
chr6127651991127652176-5'-UTR,CDS,intron-Distal,intron-Proximal3.119915.44868K562ZNF622
chr6127652108127652176-5'-UTR,CDS,intron-Distal,intron-Proximal3.976638.96385K562DDX3X
chr6127664477127664614-5'-UTR,intron-Distal,intron-Proximal3.088324.66004K562GRWD1
chr6127636129127636293-CDS,intron-Distal,intron-Proximal4.6376514.15225K562KHSRP
chr6127652055127652149-CDS,intron-Distal,intron-Proximal3.518574.41784HepG2GRWD1
chr6127651932127652039-CDS,intron-Distal,intron-Proximal3.495385.15500HepG2BCLAF1
chr6127652076127652173-CDS,intron-Distal,intron-Proximal3.171313.34231K562RBM15
chr6127651972127652055-CDS,intron-Distal,intron-Proximal4.607956.03821HepG2GRWD1
chr6127651978127652063-CDS,intron-Distal,intron-Proximal4.267184.38106HepG2PPIG
chr6127647554127647651-CDS,intron-Distal,intron-Proximal3.987135.42334HepG2QKI
chr6127626186127626251-intron-Distal5.340548.95589HepG2MATR3
chr6127631033127631117-intron-Distal3.955606.26167HepG2ILF3
chr6127633722127633784-intron-Distal4.220304.02395HepG2KHSRP
chr6127625645127625702-intron-Distal3.481909.78248HepG2SUGP2
chr6127625313127625354-intron-Distal4.696986.25174HepG2MATR3
chr6127631217127631280-intron-Distal3.434623.12625HepG2QKI
chr6127626907127626956-intron-Distal3.201904.53157HepG2MATR3
chr6127621462127621546-intron-Distal4.173694.28663HepG2SUGP2
chr6127633894127633920-intron-Distal4.5888612.47010K562KHSRP
chr6127617047127617132-intron-Distal6.1636310.40229HepG2U2AF2
chr6127633826127633894-intron-Distal3.6353710.92900K562KHSRP
chr6127630275127630329-intron-Distal3.074273.53619HepG2HNRNPM
chr6127625644127625723-intron-Distal3.280326.98117HepG2MATR3
chr6127625423127625468-intron-Distal3.643373.68481HepG2HNRNPM
chr6127629195127629258-intron-Distal3.900325.80877K562EXOSC5
chr6127628042127628082-intron-Distal4.064763.30696K562EXOSC5
chr6127626896127626950-intron-Distal4.018915.54651HepG2SUGP2
chr6127633769127633816-intron-Distal3.759984.98593K562KHSRP
chr6127625457127625597-intron-Distal5.6856223.06295HepG2MATR3
chr6127627889127627921-intron-Distal4.014993.30687K562EXOSC5
chr6127626198127626252-intron-Distal4.254839.55684HepG2SUGP2
chr6127626252127626316-intron-Distal5.271139.75642HepG2SUGP2
chr6127627012127627051-intron-Distal4.394734.32882HepG2MATR3
chr6127630531127630577-intron-Distal5.5825711.99536K562EXOSC5
chr6127633835127633947-intron-Distal4.0165211.35090HepG2KHSRP
chr6127618867127618909-intron-Distal4.444053.35169HepG2U2AF2
chr6127638746127638821-intron-Distal5.205327.62903HepG2QKI
chr6127611430127611478-intron-Distal5.249156.40247K562SF3B4
chr6127625425127625527-intron-Distal4.658904.02846K562HNRNPM
chr6127625977127626037-intron-Distal3.396104.08242HepG2PTBP1
chr6127621244127621327-intron-Distal4.230684.53660HepG2KHSRP
chr6127625628127625714-intron-Distal3.512926.91468HepG2HNRNPM
chr6127625925127625974-intron-Distal4.764997.14375HepG2SUGP2
chr6127625962127626040-intron-Distal4.405713.98115K562MATR3
chr6127630582127630683-intron-Distal4.461134.27819HepG2EXOSC5
chr6127615382127615494-intron-Distal3.870743.20552HepG2KHSRP
chr6127641519127641619-intron-Distal4.818159.54872HepG2PTBP1
chr6127630360127630422-intron-Distal4.389893.86368HepG2HNRNPM
chr6127625541127625591-intron-Distal3.578649.69972HepG2SUGP2
chr6127626957127626994-intron-Distal3.553545.32485HepG2SUGP2
chr6127633920127633973-intron-Distal4.228839.41035K562KHSRP
chr6127625483127625605-intron-Distal4.758765.01208K562MATR3
chr6127625434127625541-intron-Distal4.2243917.13695HepG2SUGP2
chr6127626585127626600-intron-Distal3.978283.51329HepG2MATR3
chr6127618783127618842-intron-Distal3.056883.33947HepG2U2AF2
chr6127629290127629334-intron-Distal3.547504.35402HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ECHDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ECHDC1 is not available on ENCORE database.

  • 85 RBPs can affect the levels of ECHDC1.  








The Knockdown/knockout RNA-Seq assay for ECHDC1 is not available on ENCORE database.





85 RBPs can affect the gene expression of ECHDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ECHDC1ENSG00000093144.141584.288901938.40370-0.291003.969203.17440HepG2AUH
ECHDC1ENSG00000093144.141087.366701499.15370-0.463302.970401.99580HepG2BCCIP
ECHDC1ENSG00000093144.141497.085201081.682900.468803.310502.47630HepG2CALR
ECHDC1ENSG00000093144.141553.112601780.72260-0.197301.986901.42520HepG2CELF1
ECHDC1ENSG00000093144.141464.630601915.01630-0.386807.398206.27040HepG2DAZAP1
ECHDC1ENSG00000093144.141253.73780951.261000.398202.360501.52290HepG2DDX24
ECHDC1ENSG00000093144.14982.159301674.81120-0.770008.130107.12280HepG2DDX6
ECHDC1ENSG00000093144.14705.68390952.58920-0.432804.656603.76480HepG2DNAJC21
ECHDC1ENSG00000093144.14790.85230944.21800-0.255702.519201.89090HepG2DNAJC2
ECHDC1ENSG00000093144.141583.809002225.59480-0.490809.233508.24150HepG2ETF1
ECHDC1ENSG00000093144.14635.91710799.40280-0.330102.081701.39240HepG2FUBP3
ECHDC1ENSG00000093144.141413.809901795.25700-0.344602.443001.79130HepG2FXR1
ECHDC1ENSG00000093144.141311.066501665.57580-0.345302.203801.60690HepG2G3BP1
ECHDC1ENSG00000093144.14975.928101236.89470-0.341902.005001.45480HepG2GPKOW
ECHDC1ENSG00000093144.14828.440801198.77990-0.533106.179905.16620HepG2HNRNPF
ECHDC1ENSG00000093144.141114.703201686.05230-0.597006.769005.71310HepG2HNRNPK
ECHDC1ENSG00000093144.141328.746001744.52490-0.392806.441205.45410HepG2HNRNPL
ECHDC1ENSG00000093144.14580.504701062.67090-0.8723019.2082017.72330HepG2HNRNPU
ECHDC1ENSG00000093144.14874.258201180.47000-0.433203.814802.97520HepG2IGF2BP1
ECHDC1ENSG00000093144.141308.227001693.09670-0.372102.679902.01400HepG2IGF2BP2
ECHDC1ENSG00000093144.14857.940101025.55320-0.257502.640701.64210HepG2KIF1C
ECHDC1ENSG00000093144.141077.497601805.99880-0.745107.953706.92950HepG2MATR3
ECHDC1ENSG00000093144.141338.152701848.59340-0.466203.747803.01470HepG2NCBP2
ECHDC1ENSG00000093144.141422.111401898.91000-0.417103.651802.77500HepG2NOL12
ECHDC1ENSG00000093144.14870.437101353.27990-0.636603.040801.88950HepG2NONO
ECHDC1ENSG00000093144.142376.937401556.927000.6103015.2141013.97590HepG2PCBP1
ECHDC1ENSG00000093144.14768.26730947.81520-0.303002.604201.88750HepG2PPIL4
ECHDC1ENSG00000093144.142000.790001584.215800.336704.750104.07580HepG2PTBP1
ECHDC1ENSG00000093144.141476.013801812.59190-0.296302.596502.01660HepG2PUF60
ECHDC1ENSG00000093144.141317.100801922.70370-0.545808.766507.60460HepG2PUM2
ECHDC1ENSG00000093144.142052.143801142.649700.8446028.2545026.66800HepG2PUS1
ECHDC1ENSG00000093144.141339.222701715.77820-0.357504.083003.34420HepG2QKI
ECHDC1ENSG00000093144.142128.369101106.102100.944207.370806.25050HepG2RAVER1
ECHDC1ENSG00000093144.142675.796201860.175400.5244010.255309.39920HepG2RBM22
ECHDC1ENSG00000093144.141362.029801076.465800.339402.537901.52320HepG2RCC2
ECHDC1ENSG00000093144.141480.479201763.09310-0.252002.778102.23630HepG2NELFE
ECHDC1ENSG00000093144.141269.520701642.05790-0.371205.261904.44610HepG2RECQL
ECHDC1ENSG00000093144.14688.56410946.34750-0.458806.105305.20530HepG2SAFB2
ECHDC1ENSG00000093144.14857.58540659.285700.379302.456301.56800HepG2SERBP1
ECHDC1ENSG00000093144.14913.848801213.56430-0.409202.088501.50140HepG2SF3A3
ECHDC1ENSG00000093144.141313.379501737.79130-0.404005.202904.29040HepG2SLBP
ECHDC1ENSG00000093144.141428.266202100.98200-0.5568013.1997012.32200HepG2SRFBP1
ECHDC1ENSG00000093144.142663.347901721.606300.6294017.2745016.30730HepG2SRSF1
ECHDC1ENSG00000093144.14940.533501177.71330-0.324403.146502.40980HepG2SRSF7
ECHDC1ENSG00000093144.141023.696101400.60850-0.452307.515306.68740HepG2SRSF9
ECHDC1ENSG00000093144.141612.826301824.11890-0.177601.769901.33720HepG2SSB
ECHDC1ENSG00000093144.141754.877402035.31530-0.213902.813502.18800HepG2SUCLG1
ECHDC1ENSG00000093144.14995.607901467.34540-0.559604.228703.41760HepG2SUPV3L1
ECHDC1ENSG00000093144.14811.442501032.53280-0.347603.078802.55580HepG2TIAL1
ECHDC1ENSG00000093144.141350.14150957.775500.495304.648203.84450HepG2U2AF1
ECHDC1ENSG00000093144.141477.582701039.073700.507808.323807.37520HepG2UTP3
ECHDC1ENSG00000093144.141047.825001444.43880-0.463103.416302.61570HepG2XRN2
ECHDC1ENSG00000093144.14935.641901183.66480-0.339204.641003.97950HepG2ZNF622
ECHDC1ENSG00000093144.141468.687902131.27470-0.537202.701102.11860K562AQR
ECHDC1ENSG00000093144.14860.952401161.86730-0.432405.707204.31250K562BCLAF1
ECHDC1ENSG00000093144.14831.717901552.47910-0.900403.397302.19660K562CNOT7
ECHDC1ENSG00000093144.141227.493201571.46620-0.356404.109802.74290K562CPEB4
ECHDC1ENSG00000093144.14641.397201110.40520-0.791803.142502.30540K562CPSF6
ECHDC1ENSG00000093144.14623.90840881.44940-0.498504.848403.39420K562CSTF2
ECHDC1ENSG00000093144.14856.261301065.11020-0.314902.757701.54720K562DDX21
ECHDC1ENSG00000093144.14627.38860815.61690-0.378502.974401.89290K562DDX3X
ECHDC1ENSG00000093144.142389.037301626.051400.5550010.773709.58410K562DDX47
ECHDC1ENSG00000093144.14641.52380826.91130-0.366203.335801.86610K562DDX6
ECHDC1ENSG00000093144.14638.77180895.81420-0.487906.192204.35550K562EIF2S1
ECHDC1ENSG00000093144.141306.407601630.23840-0.319502.775602.05600K562EIF2S2
ECHDC1ENSG00000093144.14631.88710852.09200-0.431303.496902.57830K562EIF4A3
ECHDC1ENSG00000093144.14523.72220767.32990-0.551006.388004.50290K562EIF4B
ECHDC1ENSG00000093144.14555.44520743.77290-0.421203.514202.02980K562EWSR1
ECHDC1ENSG00000093144.14721.960901129.62800-0.645902.607101.77800K562FMR1
ECHDC1ENSG00000093144.141495.28250886.135400.7547014.3458013.07600K562FXR1
ECHDC1ENSG00000093144.141264.90250974.165200.376702.095001.49160K562G3BP2
ECHDC1ENSG00000093144.14597.18200988.02210-0.726403.090602.46400K562HNRNPC
ECHDC1ENSG00000093144.141794.521601288.726500.477603.493502.08800K562HNRNPK
ECHDC1ENSG00000093144.141920.824101048.838700.8728011.484609.25670K562HNRNPM
ECHDC1ENSG00000093144.14823.521901309.79300-0.6695011.347109.56850K562HNRNPU
ECHDC1ENSG00000093144.14752.157301289.53290-0.777707.771005.72750K562IGF2BP2
ECHDC1ENSG00000093144.14609.256901034.88000-0.764303.092802.16460K562METAP2
ECHDC1ENSG00000093144.14892.693901282.84620-0.523104.324403.41430K562NSUN2
ECHDC1ENSG00000093144.14483.881201125.16750-1.217403.445002.30480K562PABPN1
ECHDC1ENSG00000093144.141453.35360883.882500.717409.052507.69400K562PRPF8
ECHDC1ENSG00000093144.14536.49470885.78080-0.723402.983202.03880K562PSIP1
ECHDC1ENSG00000093144.141558.602901317.290100.242601.886901.31970K562PTBP1
ECHDC1ENSG00000093144.142914.176702408.308600.275002.241901.50820K562PUF60
ECHDC1ENSG00000093144.142009.729402509.88620-0.320603.780202.65480K562PUM2
ECHDC1ENSG00000093144.14492.25490807.75330-0.714503.161002.09490K562RCC2
ECHDC1ENSG00000093144.141492.06630900.485800.728405.801604.61310K562RPS19
ECHDC1ENSG00000093144.14811.501601265.63030-0.641205.404904.29470K562SF3A3
ECHDC1ENSG00000093144.14490.82840765.77070-0.641702.358201.42950K562SRFBP1
ECHDC1ENSG00000093144.14466.04360608.07450-0.383802.361201.40040K562SRSF4
ECHDC1ENSG00000093144.14839.412501219.36560-0.538702.544001.54570K562SRSF5
ECHDC1ENSG00000093144.14524.17430856.06100-0.707703.889002.66930K562SUPV3L1
ECHDC1ENSG00000093144.141115.71810679.854700.7146010.519508.91370K562SYNCRIP
ECHDC1ENSG00000093144.14848.544901307.04750-0.623205.164304.18320K562TARDBP
ECHDC1ENSG00000093144.14897.916901260.75370-0.489603.700302.73570K562TIA1
ECHDC1ENSG00000093144.14468.75030852.02240-0.862103.849802.73730K562TIAL1
ECHDC1ENSG00000093144.14537.10820904.70950-0.752203.340002.28160K562TRIM56
ECHDC1ENSG00000093144.142119.763902715.07630-0.357103.094001.60490K562UBE2L3
ECHDC1ENSG00000093144.141431.073402401.37490-0.746804.058302.97930K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ECHDC1 is not available on ENCORE database.





20 RBPs can affect the splicing of ECHDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEECHDC1ENSG00000093144.14chr6-1276375941276376471276360101276360411276481461276482890.188000.004590.07079includedK562SRSF1
SEECHDC1ENSG00000093144.14chr6-127651953127652175127648146127648289127664480127664504-0.101000.000230.00636excludedK562SRSF1
SEECHDC1ENSG00000093144.14chr6-127637594127637647127636010127636041127648146127648289-0.239000.000430.01945excludedK562PRPF8
SEECHDC1ENSG00000093144.14chr6-127651953127652175127648146127648289127664480127664504-0.051000.000320.02537excludedHepG2RBM22
SEECHDC1ENSG00000093144.14chr6-1276375941276376471276360101276360411276481461276482890.164000.000220.06061includedK562PUM1
SEECHDC1ENSG00000093144.14chr6-127637594127637647127636010127636041127648146127648289-0.198000.000760.02153excludedHepG2HNRNPK
SEECHDC1ENSG00000093144.14chr6-127651953127652175127648146127648289127664480127664504-0.133000.005700.05882excludedHepG2U2AF2
SEECHDC1ENSG00000093144.14chr6-1276370781276371191276359601276360411276375941276376470.116000.000180.00286includedK562AQR
SEECHDC1ENSG00000093144.14chr6-127652974127653012127651953127652175127664480127664504-0.086000.000370.00530excludedK562AQR
SEECHDC1ENSG00000093144.14chr6-127637594127637647127635960127636041127648146127648332-0.200000.000040.00079excludedK562AQR
SEECHDC1ENSG00000093144.14chr6-1276375941276376471276360101276360411276481461276482890.201000.001560.05567includedK562FXR1
SEECHDC1ENSG00000093144.14chr6-1276375941276376471276360101276360411276481461276482890.129000.000120.03980includedHepG2BCLAF1
SEECHDC1ENSG00000093144.14chr6-127637594127637647127636010127636041127648146127648289-0.157000.006200.07328excludedK562PUS1
SEECHDC1ENSG00000093144.14chr6-127637594127637647127636010127636041127648146127648289-0.291000.000110.00945excludedK562EFTUD2
SEECHDC1ENSG00000093144.14chr6-127637594127637647127636010127636041127648146127648289-0.250000.001230.02663excludedK562U2AF1
SEECHDC1ENSG00000093144.14chr6-1276375941276376471276360101276360411276481461276482890.169000.000240.03271includedHepG2LARP4
SEECHDC1ENSG00000093144.14chr6-1276375941276376471276360101276360411276481461276482890.140000.000040.00179includedHepG2SRSF1
SEECHDC1ENSG00000093144.14chr6-1276375941276376471276360101276360411276481461276482890.156000.000010.00134includedHepG2SUPV3L1
SEECHDC1ENSG00000093144.14chr6-1276375941276376471276360101276360411276481461276482890.208000.000950.03629includedK562HNRNPU
SEECHDC1ENSG00000093144.14chr6-127650966127651027127648146127648289127651953127652175-0.053000.002330.05163excludedK562RBM15
SEECHDC1ENSG00000093144.14chr6-127650966127651027127648146127648289127651953127652175-0.053000.003170.06630excludedK562AGGF1
SEECHDC1ENSG00000093144.14chr6-127637594127637647127636010127636041127648146127648289-0.237000.000190.00756excludedK562AGGF1
SEECHDC1ENSG00000093144.14chr6-1276529741276530121276519531276521751276644801276645040.117000.000170.03277includedHepG2KHSRP
SEECHDC1ENSG00000093144.14chr6-127637594127637647127636010127636041127648146127648289-0.245000.000620.01294excludedK562HNRNPC
MXEECHDC1ENSG00000093144.14chr6-127637594127637647127648142127648289127635960127636041127651953127652175-0.224000.000000.000012includedHepG2FTO
MXEECHDC1ENSG00000093144.14chr6-127637594127637647127648146127648289127635960127636041127651953127652175-0.202000.000630.015942includedHepG2FTO
MXEECHDC1ENSG00000093144.14chr6-1276359601276360411276481461276482891276104111276114221276644801276647070.055000.004380.059351includedK562SRSF1
MXEECHDC1ENSG00000093144.14chr6-127635960127636041127648146127648289127611132127611422127651953127652175-0.130000.002150.029292includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ECHDC1 is not avaliable on ENCORE database.