CSPP1

General Information

Gene Name       : CSPP1
Gene ID             : ENSG00000104218.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CSPP1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CSPP1ENSG00000104218.1410.257.899.07ENCSR000AEF
HepG2CSPP1ENSG00000104218.146.7210.008.36ENCSR985KAT
K562CSPP1ENSG00000104218.1415.2818.0716.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CSPP1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • CSPP1 RNA is bound by 22 proteins.  







eCLIP assay for CSPP1 is not avaliable on ENCORE database.





22 proteins are bound to CSPP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr86802430168024420+3'-UTR,intron-Distal,intron-Proximal4.4909814.89285K562KHSRP
chr86803099268031052+3'-UTR,CDS3.028925.41277K562UCHL5
chr86803100668031055+3'-UTR,CDS4.149356.94741K562ZNF622
chr86802604768026089+3'-UTR,CDS3.059404.03389K562ZNF622
chr86803048368030518+3'-UTR,CDS4.434834.16170K562UCHL5
chr86803055168030604+3'-UTR,CDS3.834308.37042K562ZNF622
chr86807071768070834+3'-UTR,CDS,intron-Proximal4.465104.29290K562TRA2A
chr86806635768066409+3'-UTR,CDS,intron-Proximal5.7511113.12143K562PRPF8
chr86803059468030646+3'-UTR,CDS,intron-Proximal3.184883.18246K562PRPF8
chr86810797868108049+3'-UTR6.571797.88033K562PUM2
chr86804969268049741+3'-UTR,CDS3.235134.59873K562UCHL5
chr86804424568044311+3'-UTR,CDS4.512874.78529HepG2BCLAF1
chr86804974968049832+3'-UTR,CDS3.247103.22545HepG2PPIG
chr86803053368030594+3'-UTR,CDS3.783793.14999HepG2GRWD1
chr86804977568049824+3'-UTR,CDS4.930565.68196HepG2BCLAF1
chr86804974168049833+3'-UTR,CDS5.1495715.52231K562UCHL5
chr86802830368028358+3'-UTR,CDS,intron-Proximal3.588265.91739K562UCHL5
chr86799826167998339+3'-UTR,5'-UTR,CDS3.760698.94096K562ZNF622
chr86804424568044288+3'-UTR,CDS3.755565.08507K562ZNF622
chr86804975568049818+3'-UTR,CDS5.5365010.17900K562ZNF622
chr86810829768108399+3'-UTR3.846073.25538K562KHSRP
chr86802824468028350+3'-UTR,CDS4.170599.42122K562ZNF622
chr86800775468007847+5'-UTR,CDS3.106887.10910K562UCHL5
chr86800775868007825+5'-UTR,CDS4.581609.88142K562ZNF622
chr86800784768007920+5'-UTR,CDS3.546357.21479K562UCHL5
chr86798650067986587+5'-UTR,CDS,intron-Proximal3.851493.25843K562SRSF1
chr86798652867986576+5'-UTR,CDS4.406384.34038HepG2BCLAF1
chr86798649867986566+5'-UTR,CDS3.730903.31827HepG2GRWD1
chr86800776968007837+5'-UTR,CDS4.630113.89826HepG2BCLAF1
chr86801535468015453+CDS,intron-Proximal4.939614.24111K562EFTUD2
chr86802420468024268+CDS,intron-Proximal3.287976.54511K562UCHL5
chr86807667668076712+CDS4.483404.90367K562ZNF622
chr86807132068071343+CDS4.255564.21675K562ZNF622
chr86800792768007965+CDS3.784185.14848K562ZNF622
chr86810292168102978+CDS3.173674.35477K562UCHL5
chr86801813868018175+CDS,intron-Proximal3.963085.47804K562ZNF622
chr86801534868015370+CDS4.498274.21675K562ZNF622
chr86800792068007977+CDS,intron-Proximal3.745537.10975K562UCHL5
chr86801817568018210+CDS5.070588.05035K562ZNF622
chr86807129068071374+CDS,intron-Proximal4.360904.56253K562TRA2A
chr86807597068075994+CDS3.872203.18234K562BUD13
chr86801817468018210+CDS4.758635.87202K562UCHL5
chr86802420668024261+CDS,intron-Proximal3.826265.35703HepG2BCLAF1
chr86807651568076636+CDS,intron-Distal,intron-Proximal3.271574.56724K562KHSRP
chr86802423868024297+CDS3.038915.12210K562ZNF622
chr86803342468033492+intron-Distal3.694063.26999K562KHSRP
chr86798897267989071+intron-Distal3.642287.01633K562KHSRP
chr86803508768035192+intron-Distal4.992667.51195K562TARDBP
chr86805541868055503+intron-Distal3.248634.41421K562PTBP1
chr86799495267995041+intron-Distal3.805263.42844K562KHSRP
chr86806192168061948+intron-Distal,intron-Proximal3.896563.45805K562KHSRP
chr86801441568014498+intron-Distal3.141716.92889K562KHSRP
chr86809953368099653+intron-Distal3.375564.95618K562SAFB2
chr86806194868062002+intron-Distal,intron-Proximal4.535325.62025K562KHSRP
chr86803013168030226+intron-Distal3.6460212.53363K562KHSRP
chr86802304868023113+intron-Distal4.546344.54401K562KHSRP
chr86801515268015214+intron-Distal,intron-Proximal3.539134.93120K562KHSRP
chr86807858068078699+intron-Distal5.4865412.72263K562KHSRP
chr86809658068096698+intron-Distal3.741183.10466K562SAFB2
chr86797696067977051+intron-Distal4.850097.24177K562CSTF2T
chr86803228368032343+intron-Distal3.346053.72952K562EXOSC5
chr86805744568057584+intron-Distal3.531855.78005K562KHSRP
chr86805584768055943+intron-Distal4.589425.41654K562KHSRP
chr86801074268010846+intron-Distal3.485564.57207HepG2KHSRP
chr86806079568060886+intron-Distal3.356816.80241K562KHSRP
chr86803034568030413+intron-Distal,intron-Proximal4.608797.00634K562KHSRP
chr86801085368010916+intron-Distal3.443046.80241K562KHSRP
chr86806164368061716+intron-Distal3.039014.35941K562KHSRP
chr86797693967977051+intron-Distal3.891523.48722HepG2PRPF4
chr86800718668007310+intron-Distal3.700719.96381K562KHSRP
chr86800982368009905+intron-Distal3.906577.99418K562KHSRP
chr86807678568076848+intron-Distal,intron-Proximal4.281204.22101K562PRPF8
chr86802313568023199+intron-Distal3.104073.17926K562KHSRP
chr86801449868014574+intron-Distal3.415737.19702K562KHSRP
chr86801075868010853+intron-Distal4.8971224.95653K562KHSRP
chr86803562068035687+intron-Distal4.038093.89294K562KHSRP
chr86807639768076498+intron-Distal3.793723.02234K562KHSRP
chr86803075368030870+intron-Distal3.882127.69621K562KHSRP
chr86802836968028490+intron-Distal,intron-Proximal4.896147.17304K562KHSRP
chr86797705167977172+intron-Distal4.276459.13279K562CSTF2T
chr86801438868014499+intron-Distal5.371867.27507HepG2U2AF2
chr86800970668009741+intron-Distal4.170167.90970K562KHSRP
chr86807229468072406+intron-Distal5.201425.43236K562PTBP1
chr86800974168009789+intron-Distal4.100919.20471K562KHSRP
chr86799382467993905+intron-Distal5.233566.36700K562QKI
chr86797679167976895+intron-Distal,intron-Proximal4.763574.84986K562GTF2F1
chr86798857167988663+intron-Distal,intron-Proximal3.242843.96958K562KHSRP
chr86802311668023135+intron-Distal3.649293.07751K562KHSRP
chr86803242168032512+intron-Distal4.788735.44433K562EXOSC5
chr86810301068103107+intron-Distal,intron-Proximal4.281204.22101K562PRPF8
chr86797678867976875+intron-Distal,intron-Proximal3.345033.15535K562EWSR1
chr86797700767977163+intron-Distal4.001885.54974K562EWSR1
chr86804409068044169+intron-Proximal4.431035.62025K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CSPP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CSPP1 is not available on ENCORE database.

  • 60 RBPs can affect the levels of CSPP1.  








The Knockdown/knockout RNA-Seq assay for CSPP1 is not available on ENCORE database.





60 RBPs can affect the gene expression of CSPP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CSPP1ENSG00000104218.9358.04030241.674000.567003.281402.54600HepG2DDX21
CSPP1ENSG00000104218.9167.45080224.39980-0.422301.941101.37710HepG2DNAJC2
CSPP1ENSG00000104218.9370.70500218.607800.761804.653803.82740HepG2EIF4A3
CSPP1ENSG00000104218.9315.08860217.136900.537102.568301.71260HepG2G3BP2
CSPP1ENSG00000104218.9276.72490375.67720-0.441002.683301.97580HepG2HNRNPF
CSPP1ENSG00000104218.9284.97080207.066000.460601.915401.32850HepG2HNRNPK
CSPP1ENSG00000104218.9229.11870330.15390-0.527003.646902.88020HepG2HNRNPL
CSPP1ENSG00000104218.9263.78070369.93790-0.487902.843102.10870HepG2IGF2BP1
CSPP1ENSG00000104218.9314.08860220.570900.509802.288301.69000HepG2MAGOH
CSPP1ENSG00000104218.9378.17690278.197900.442802.310701.56840HepG2MSI2
CSPP1ENSG00000104218.9338.02740227.051600.574002.227201.65640HepG2NCBP2
CSPP1ENSG00000104218.9279.89840192.468900.540203.285602.63540HepG2PCBP1
CSPP1ENSG00000104218.9342.35180237.621500.526703.656202.77790HepG2PRPF4
CSPP1ENSG00000104218.9255.38600195.860600.382801.973201.49720HepG2PTBP1
CSPP1ENSG00000104218.9242.90560343.05860-0.498102.714702.12340HepG2PUF60
CSPP1ENSG00000104218.9530.06680363.903200.542504.219703.40120HepG2PUM2
CSPP1ENSG00000104218.9487.23080217.960501.1604015.0555013.98290HepG2NELFE
CSPP1ENSG00000104218.9326.46430203.025200.685204.979004.18240HepG2RECQL
CSPP1ENSG00000104218.9280.31080203.886800.459202.367901.81520HepG2SF3B4
CSPP1ENSG00000104218.9256.78570328.92530-0.357201.968701.35880HepG2SLBP
CSPP1ENSG00000104218.9446.45440212.825701.0687012.2768011.43230HepG2SRSF1
CSPP1ENSG00000104218.9257.54010369.07980-0.519103.597702.81940HepG2SRSF7
CSPP1ENSG00000104218.9280.85280173.155400.697605.152204.44130HepG2SRSF9
CSPP1ENSG00000104218.9306.33680191.329300.679004.648803.95130HepG2TAF15
CSPP1ENSG00000104218.9310.44390445.06010-0.519703.039202.28270HepG2TARDBP
CSPP1ENSG00000104218.9445.62400294.035300.599702.215701.64730HepG2U2AF1
CSPP1ENSG00000104218.9325.94340234.502600.474903.004102.30980HepG2ZC3H8
CSPP1ENSG00000104218.9808.16650600.275400.428903.340002.02710K562AARS
CSPP1ENSG00000104218.9761.328301028.63220-0.434103.483502.85990K562AGGF1
CSPP1ENSG00000104218.9889.557901130.22730-0.345502.790001.80230K562AKAP8
CSPP1ENSG00000104218.9758.543001070.31770-0.496704.813603.94430K562AKAP8L
CSPP1ENSG00000104218.91865.910801431.639500.382103.681802.22710K562APOBEC3C
CSPP1ENSG00000104218.9830.983301122.98190-0.434405.224703.92580K562ATP5C1
CSPP1ENSG00000104218.9537.34680659.59610-0.295702.201001.34310K562BCLAF1
CSPP1ENSG00000104218.9969.959901244.96560-0.360103.379602.51030K562CPSF6
CSPP1ENSG00000104218.9738.83780941.02620-0.349003.251201.93350K562DDX21
CSPP1ENSG00000104218.92037.032101480.517600.460308.140707.10070K562DDX47
CSPP1ENSG00000104218.9937.33800641.838000.546303.729702.81560K562EIF3G
CSPP1ENSG00000104218.9693.84520476.694700.541404.502303.45510K562EIF4A3
CSPP1ENSG00000104218.9523.93190713.61340-0.445803.612102.13860K562EXOSC5
CSPP1ENSG00000104218.9806.52970495.739600.702009.558708.51510K562FXR1
CSPP1ENSG00000104218.9778.70730573.352900.441602.377001.72870K562G3BP2
CSPP1ENSG00000104218.9781.995201188.65310-0.604106.880205.62690K562GPKOW
CSPP1ENSG00000104218.91031.196301372.70540-0.412703.380102.54660K562GRSF1
CSPP1ENSG00000104218.91033.919001337.90530-0.371903.383402.19880K562HNRNPL
CSPP1ENSG00000104218.9677.857601003.28150-0.565702.963101.99720K562HNRNPM
CSPP1ENSG00000104218.91246.624001654.04570-0.408002.008801.32570K562HSPD1
CSPP1ENSG00000104218.9471.30570697.76560-0.566103.710802.45650K562IGF2BP2
CSPP1ENSG00000104218.9968.92040733.173500.402103.427902.48710K562MAGOH
CSPP1ENSG00000104218.9847.593901087.32210-0.359302.787201.70730K562MAK16
CSPP1ENSG00000104218.91019.195601272.53750-0.320302.698501.80440K562MBNL1
CSPP1ENSG00000104218.9876.167901160.25070-0.405203.523402.52850K562METAP2
CSPP1ENSG00000104218.9885.276901040.80470-0.233502.372301.67710K562NSUN2
CSPP1ENSG00000104218.9732.914601132.68570-0.628002.558401.61590K562PABPN1
CSPP1ENSG00000104218.9847.49760652.315400.377502.777701.79570K562PCBP2
CSPP1ENSG00000104218.91189.68560907.715600.390202.300301.54220K562PCBP3
CSPP1ENSG00000104218.9934.44700696.271100.424403.810102.86390K562POLR2G
CSPP1ENSG00000104218.9824.444501384.67880-0.748104.537803.44960K562PPIG
CSPP1ENSG00000104218.9817.177201347.20280-0.721202.874101.39180K562PPP1R8
CSPP1ENSG00000104218.9872.77660712.335200.293002.092401.50020K562PTBP1
CSPP1ENSG00000104218.9734.69310482.595700.606204.497703.18260K562RPS3
CSPP1ENSG00000104218.91257.879601052.102600.257602.693501.76800K562SRPK2
CSPP1ENSG00000104218.9954.49940698.342900.450704.235303.36810K562SRSF1
CSPP1ENSG00000104218.9682.06890839.78690-0.300102.513801.40130K562SRSF7
CSPP1ENSG00000104218.91014.64940698.347200.538906.224104.98530K562SYNCRIP
CSPP1ENSG00000104218.9415.00910601.77830-0.536104.090102.89330K562TRIM56
CSPP1ENSG00000104218.9905.088601158.50200-0.356104.004602.47560K562TROVE2
CSPP1ENSG00000104218.91341.27700981.922700.449807.331606.01750K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CSPP1 is not available on ENCORE database.





19 RBPs can affect the splicing of CSPP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECSPP1ENSG00000104218.9chr8+6810492368105038681028846810299468105698681058370.238000.000010.00036includedK562SRSF1
SECSPP1ENSG00000104218.9chr8+6800403768004118679982416799834568005777680058550.639000.000000.00000includedK562SRSF1
SECSPP1ENSG00000104218.9chr8+680850036808520868084746680847906808753068087671-0.152000.000040.00158excludedK562SRSF1
SECSPP1ENSG00000104218.9chr8+6808500368085208680847466808479068087530680876710.339000.000990.03131includedK562AKAP8L
SECSPP1ENSG00000104218.9chr8+681056986810583768102884681029946810761668108498-0.182000.000130.00637excludedK562AKAP8L
SECSPP1ENSG00000104218.9chr8+680620176806217068049690680498386806625868066371-0.117000.003500.08043excludedK562AKAP8L
SECSPP1ENSG00000104218.9chr8+680057776800587667998241679983456800752768007967-0.360000.000000.00004excludedK562AKAP8L
SECSPP1ENSG00000104218.9chr8+6807487268074997680740456807415068075966680760330.382000.000000.00042includedHepG2HNRNPM
SECSPP1ENSG00000104218.9chr8+680620176806217068049690680498386806625868066371-0.278000.009650.08878excludedHepG2U2AF2
SECSPP1ENSG00000104218.9chr8+681056986810583768102826681029946810761668108494-0.209000.000060.00110excludedK562AQR
SECSPP1ENSG00000104218.9chr8+680850036808520868084746680847906808753068087671-0.144000.003210.09287excludedK562FXR1
SECSPP1ENSG00000104218.9chr8+680620176806217068049690680498386807068168070831-0.170000.004260.05511excludedK562PUS1
SECSPP1ENSG00000104218.9chr8+680152716801537068007527680079676801813968018210-0.216000.000090.00228excludedK562PUS1
SECSPP1ENSG00000104218.9chr8+679887166798881667986477679865866799824167998345-0.205000.001450.02316excludedK562PUS1
SECSPP1ENSG00000104218.9chr8+680057776800587667998241679983456800752768007967-0.367000.000000.00000excludedK562PUS1
SECSPP1ENSG00000104218.9chr8+6798704067987158679864776798658667988716679887470.235000.002540.04828includedK562U2AF1
SECSPP1ENSG00000104218.9chr8+6798704067987158679864776798658667988716679888160.189000.000560.07119includedK562HNRNPM
SECSPP1ENSG00000104218.9chr8+6807487268074997680740456807415068075966680760330.402000.000000.00000includedK562HNRNPM
SECSPP1ENSG00000104218.9chr8+6808501268085208680846506808479068087530680876710.251000.000090.01626includedHepG2LARP4
SECSPP1ENSG00000104218.9chr8+680850036808520868084746680847906808753068087671-0.191000.002950.05926excludedHepG2SRSF1
SECSPP1ENSG00000104218.9chr8+6808500368085208680847466808479068087530680876710.314000.001020.06571includedK562HNRNPUL1
SECSPP1ENSG00000104218.9chr8+6798704067987158679864776798658667988716679888160.271000.002150.06032includedK562UTP18
SECSPP1ENSG00000104218.9chr8+680152716801537068007527680079676801813968018210-0.163000.002970.07605excludedK562UTP18
SECSPP1ENSG00000104218.9chr8+679887166798881667986477679865866799824167998345-0.261000.000060.00375excludedK562UTP18
SECSPP1ENSG00000104218.9chr8+681056986810583768102884681029946810761668108498-0.282000.001780.03191excludedK562U2AF2
SECSPP1ENSG00000104218.9chr8+681056986810583768102884681029946810761668108498-0.393000.000000.00004excludedK562HNRNPU
SECSPP1ENSG00000104218.9chr8+680620176806217068049690680498386806625868066371-0.248000.000610.02566excludedK562HNRNPU
SECSPP1ENSG00000104218.9chr8+681056986810583768102884681029946810761668108498-0.141000.001130.03004excludedK562RBM15
SECSPP1ENSG00000104218.9chr8+680152716801537068007527680079676801813968018210-0.182000.003510.07027excludedK562RBM15
SECSPP1ENSG00000104218.9chr8+679887166798881667986477679865866799824167998345-0.176000.002700.05760excludedK562RBM15
SECSPP1ENSG00000104218.9chr8+680057776800587667998241679983456800752768007967-0.367000.000000.00000excludedK562RBM15
SECSPP1ENSG00000104218.9chr8+6798704067987158679864776798658667988716679888160.242000.004690.08863includedK562AGGF1
SECSPP1ENSG00000104218.9chr8+6808500368085208680847466808479068087530680876710.351000.000220.00849includedK562AGGF1
SECSPP1ENSG00000104218.9chr8+680662586806637168062017680621706807068168070831-0.077000.004900.09167excludedK562AGGF1
SECSPP1ENSG00000104218.9chr8+679887166798881667986477679865866799824167998345-0.397000.000000.00002excludedK562AGGF1
SECSPP1ENSG00000104218.9chr8+6807487268074997680740456807415068075966680760330.091000.000390.04522includedK562CPSF6
SECSPP1ENSG00000104218.9chr8+6798704067987158679864776798658667988716679888160.185000.000130.02586includedK562ZC3H8
SECSPP1ENSG00000104218.9chr8+6810492368105038681028846810299468105698681058370.434000.004520.06420includedK562HNRNPC
SECSPP1ENSG00000104218.9chr8+6798704067987158679864776798658667988716679888160.775000.000000.00000includedK562HNRNPC
A3SSCSPP1ENSG00000104218.9chr8+6808462068084790680846506808479068076533680767430.088000.001760.01149longerK562AQR
MXECSPP1ENSG00000104218.9chr8+68007527680079676801527168015370679982416799834568018139680182100.318000.000020.001571includedK562RBM15
MXECSPP1ENSG00000104218.9chr8+6808991468089961681028846810299468087530680876716810761668107753-0.091000.000200.009442includedK562RBM15
MXECSPP1ENSG00000104218.9chr8+68062017680621706806625868066371680496906804983868070681680708310.130000.000620.013241includedK562DROSHA
MXECSPP1ENSG00000104218.9chr8+6804969068049838680620176806217068044185680443156806625868066371-0.192000.002500.034762includedK562DROSHA
MXECSPP1ENSG00000104218.9chr8+68007527680079676801527168015370679982416799834568018139680182100.424000.000000.000001includedK562PUS1
MXECSPP1ENSG00000104218.9chr8+6808991468089961681028846810299468087530680876716810761668107753-0.117000.000030.000352includedK562AQR
MXECSPP1ENSG00000104218.9chr8+6808991468089961681028266810299468087530680876716810761668107753-0.103000.000120.001452includedK562AQR
MXECSPP1ENSG00000104218.9chr8+68049690680498386806201768062170680441856804431568066258680663710.157000.001400.092761includedK562PUM1
MXECSPP1ENSG00000104218.9chr8+6808991468089961681028846810299468087530680876716810761668107753-0.151000.000790.034192includedK562HNRNPU
MXECSPP1ENSG00000104218.9chr8+68007527680079676801527168015370679982416799834568018139680182100.367000.000010.000961includedK562AKAP8L
MXECSPP1ENSG00000104218.9chr8+68005777680058766800752768007967679982416799834568015271680153700.179000.002590.042031includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CSPP1 is not avaliable on ENCORE database.