CCNE1

General Information

Gene Name       : CCNE1
Gene ID             : ENSG00000105173.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCNE1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCNE1ENSG00000105173.1327.2229.3328.27ENCSR000AEF
HepG2CCNE1ENSG00000105173.1330.7135.3933.05ENCSR985KAT
K562CCNE1ENSG00000105173.1329.2827.5628.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCNE1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCNE1 RNA is bound by 2 proteins.  







eCLIP assay for CCNE1 is not avaliable on ENCORE database.





2 proteins are bound to CCNE1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193030354030303603+5'-UTR,CDS,intron-Proximal3.388647.02084HepG2PRPF8
chr193030388030303952+CDS,intron-Proximal3.299455.30777HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCNE1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCNE1 is not available on ENCORE database.

  • 111 RBPs can affect the levels of CCNE1.  








The Knockdown/knockout RNA-Seq assay for CCNE1 is not available on ENCORE database.





111 RBPs can affect the gene expression of CCNE1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCNE1ENSG00000105173.9640.24850423.241700.597103.554502.96130HepG2AKAP1
CCNE1ENSG00000105173.9587.92460480.192200.291902.033801.36290HepG2AKAP8L
CCNE1ENSG00000105173.9529.50530803.37490-0.601407.995606.92670HepG2AUH
CCNE1ENSG00000105173.9277.84040448.08640-0.689504.981003.80580HepG2BCLAF1
CCNE1ENSG00000105173.9250.42360720.31700-1.5243024.8273023.32480HepG2BOP1
CCNE1ENSG00000105173.9432.56180597.22550-0.465403.707502.83270HepG2CALR
CCNE1ENSG00000105173.9203.53590332.72890-0.709102.342801.62630HepG2CIRBP
CCNE1ENSG00000105173.9347.23590661.30210-0.929409.863308.64380HepG2CPSF6
CCNE1ENSG00000105173.9469.74830736.19410-0.648209.303908.07070HepG2DAZAP1
CCNE1ENSG00000105173.9290.54670397.37440-0.451702.612801.72650HepG2DDX24
CCNE1ENSG00000105173.9115.65700186.53770-0.689602.980501.63650HepG2DDX47
CCNE1ENSG00000105173.9361.79710507.13420-0.487202.797802.02090HepG2DDX55
CCNE1ENSG00000105173.9413.97780750.95320-0.859205.030303.72640HepG2DDX59
CCNE1ENSG00000105173.9420.36270589.90140-0.488803.377802.26960HepG2DDX5
CCNE1ENSG00000105173.9213.34840348.18540-0.706602.254601.69160HepG2DDX6
CCNE1ENSG00000105173.9184.48190389.68470-1.0788010.319408.56780HepG2DHX30
CCNE1ENSG00000105173.9214.30950373.93710-0.803104.959003.47150HepG2AGO1
CCNE1ENSG00000105173.978.77380334.86030-2.087809.144908.10500HepG2EIF2S1
CCNE1ENSG00000105173.9387.15160553.37230-0.515404.036602.62930HepG2EIF2S2
CCNE1ENSG00000105173.9112.46540197.68380-0.813703.202701.32590HepG2EIF3H
CCNE1ENSG00000105173.9225.48030360.24150-0.676001.935901.35380HepG2EIF4B
CCNE1ENSG00000105173.9425.46000726.35540-0.771705.003103.93240HepG2EIF4G1
CCNE1ENSG00000105173.9421.55680695.79210-0.722906.724305.48070HepG2EIF4G2
CCNE1ENSG00000105173.9699.01400922.36510-0.400004.410003.68220HepG2ETF1
CCNE1ENSG00000105173.9247.69880386.98620-0.643704.438303.04280HepG2FASTKD2
CCNE1ENSG00000105173.9366.93060662.41080-0.852203.372902.24620HepG2FTO
CCNE1ENSG00000105173.9179.27650262.97070-0.552702.740701.95890HepG2FUBP3
CCNE1ENSG00000105173.9682.25570373.237200.870108.467907.31230HepG2FXR1
CCNE1ENSG00000105173.9235.21870456.27870-0.955908.686906.87510HepG2GNB2L1
CCNE1ENSG00000105173.9258.66250749.67020-1.5352020.9957019.40720HepG2GPKOW
CCNE1ENSG00000105173.9260.10160128.661601.015405.419203.85660HepG2GRSF1
CCNE1ENSG00000105173.9479.16420676.61410-0.497804.712103.54400HepG2HNRNPA2B1
CCNE1ENSG00000105173.9507.35430725.99050-0.517005.958704.95930HepG2HNRNPF
CCNE1ENSG00000105173.9222.55470715.42110-1.6846026.1104024.49860HepG2HNRNPLL
CCNE1ENSG00000105173.9478.60160714.89170-0.578905.948404.92740HepG2IGF2BP1
CCNE1ENSG00000105173.9190.84690352.08670-0.883502.368001.73720HepG2IGF2BP2
CCNE1ENSG00000105173.9295.93750436.90200-0.562005.225803.83340HepG2KIF1C
CCNE1ENSG00000105173.9980.39910699.349200.487302.941302.08410HepG2LARP4
CCNE1ENSG00000105173.9641.65210375.489900.772905.358704.50550HepG2MATR3
CCNE1ENSG00000105173.9863.33950596.127800.534204.844203.79490HepG2MSI2
CCNE1ENSG00000105173.9432.51900729.56510-0.754304.483203.22860HepG2MTPAP
CCNE1ENSG00000105173.9325.64740634.33390-0.961909.682308.34390HepG2NSUN2
CCNE1ENSG00000105173.956.25260127.03010-1.175204.152603.04960HepG2PABPC1
CCNE1ENSG00000105173.9190.02440342.42510-0.849603.011702.25990HepG2PABPC4
CCNE1ENSG00000105173.9298.71910508.39890-0.767204.685103.36070HepG2PCBP2
CCNE1ENSG00000105173.9483.03890340.624100.503903.932103.30520HepG2PTBP1
CCNE1ENSG00000105173.9402.25560696.87790-0.792808.592607.61840HepG2PUF60
CCNE1ENSG00000105173.9372.52320739.78720-0.9898019.5856018.29760HepG2PUM1
CCNE1ENSG00000105173.9316.12440490.50600-0.633802.640701.95160HepG2RAVER1
CCNE1ENSG00000105173.9480.16610741.42670-0.626806.839005.57110HepG2RBM15
CCNE1ENSG00000105173.9454.48050770.93000-0.7624010.456209.59230HepG2RBM22
CCNE1ENSG00000105173.9220.49900334.81470-0.602603.702702.92990HepG2RBM25
CCNE1ENSG00000105173.9861.06670379.089501.1835023.5317022.26150HepG2NELFE
CCNE1ENSG00000105173.9558.72590353.056500.662106.801005.89630HepG2RECQL
CCNE1ENSG00000105173.9283.41260782.09560-1.4644025.4505023.81640HepG2RPLP0
CCNE1ENSG00000105173.9266.06730482.02850-0.857305.321404.03510HepG2RPS10
CCNE1ENSG00000105173.9465.29800328.634100.501603.228302.57130HepG2RPS19
CCNE1ENSG00000105173.9178.37690386.78330-1.116609.114307.80220HepG2RRP9
CCNE1ENSG00000105173.9290.14210401.37020-0.468202.766002.12160HepG2SAFB2
CCNE1ENSG00000105173.9295.78300708.14440-1.2595017.6057015.99300HepG2SF3B1
CCNE1ENSG00000105173.9509.50740354.650100.522604.256603.54810HepG2SF3B4
CCNE1ENSG00000105173.9363.72490668.23950-0.8775013.9713012.60500HepG2SLBP
CCNE1ENSG00000105173.9417.46150787.92810-0.916406.602605.38710HepG2SNRNP70
CCNE1ENSG00000105173.9632.71460870.74330-0.460705.354404.72030HepG2SRFBP1
CCNE1ENSG00000105173.9874.92390370.171201.2409026.8733025.73130HepG2SRSF1
CCNE1ENSG00000105173.9558.28070761.91220-0.448602.343001.43130HepG2SRSF3
CCNE1ENSG00000105173.9381.57360713.26770-0.9025015.0679013.66930HepG2SRSF7
CCNE1ENSG00000105173.9187.19150301.14820-0.686005.224204.50830HepG2SRSF9
CCNE1ENSG00000105173.9536.73340756.02210-0.494205.670604.98700HepG2SSB
CCNE1ENSG00000105173.91109.18700782.526800.503208.230207.25320HepG2SUCLG1
CCNE1ENSG00000105173.9335.32030497.36210-0.568804.309303.14860HepG2SUPT6H
CCNE1ENSG00000105173.9425.94840332.705600.356302.055201.55900HepG2TAF15
CCNE1ENSG00000105173.9534.67090697.22750-0.383002.337501.66390HepG2TARDBP
CCNE1ENSG00000105173.9235.54470338.30870-0.522302.861301.84920HepG2TFIP11
CCNE1ENSG00000105173.9203.78480437.88120-1.1035012.8866011.94400HepG2TIAL1
CCNE1ENSG00000105173.9196.65680441.87350-1.1680016.7249015.49480HepG2TRIM56
CCNE1ENSG00000105173.9884.33480630.126900.488903.469002.77060HepG2U2AF1
CCNE1ENSG00000105173.9213.65060298.15660-0.480802.509101.78670HepG2UCHL5
CCNE1ENSG00000105173.972.97320124.98450-0.776302.566601.51850HepG2XPO5
CCNE1ENSG00000105173.9307.50840496.91110-0.692405.378204.37760HepG2XRN2
CCNE1ENSG00000105173.9435.50230592.53610-0.444204.260403.45510HepG2ZC3H8
CCNE1ENSG00000105173.9271.05550634.21330-1.2264023.0287021.83190HepG2ZNF622
CCNE1ENSG00000105173.9795.57400541.745000.554306.582305.76160K562AGGF1
CCNE1ENSG00000105173.9535.16530757.20500-0.500702.440201.88280K562AQR
CCNE1ENSG00000105173.9201.18890481.14720-1.2579011.634209.80930K562BOP1
CCNE1ENSG00000105173.9390.66110634.65650-0.700105.489403.41630K562BUD13
CCNE1ENSG00000105173.9295.36140445.42760-0.592704.138302.56010K562CIRBP
CCNE1ENSG00000105173.9291.01290624.60170-1.101907.627905.81420K562CNOT7
CCNE1ENSG00000105173.9261.35330511.62340-0.969108.362306.98600K562CPSF6
CCNE1ENSG00000105173.9247.38740357.03050-0.529303.059401.94380K562CSTF2
CCNE1ENSG00000105173.9455.07410613.74920-0.431503.321001.99110K562DDX21
CCNE1ENSG00000105173.9215.39980307.12110-0.511802.751201.71250K562DDX3X
CCNE1ENSG00000105173.9447.61200801.15000-0.8398014.0141012.65880K562DDX47
CCNE1ENSG00000105173.9927.88570606.622200.613008.334706.66430K562DKC1
CCNE1ENSG00000105173.9256.75150416.05870-0.696404.781103.56670K562EFTUD2
CCNE1ENSG00000105173.9244.91920337.36520-0.462002.855901.62400K562EIF2S1
CCNE1ENSG00000105173.9323.62180724.25940-1.1622021.8209020.09530K562EIF2S2
CCNE1ENSG00000105173.9199.00770324.32750-0.704602.324901.41100K562EIF3A
CCNE1ENSG00000105173.9785.364001009.27490-0.361903.260602.24340K562EIF4G2
CCNE1ENSG00000105173.9449.68110696.42500-0.631103.607101.70570K562ESF1
CCNE1ENSG00000105173.9283.71040520.51450-0.875508.037006.53160K562FMR1
CCNE1ENSG00000105173.9183.96580441.16120-1.2619012.3106010.26280K562FTO
CCNE1ENSG00000105173.9578.64000333.695600.794009.592608.54620K562FXR1
CCNE1ENSG00000105173.9189.44170488.49520-1.3666013.8130012.02140K562GPKOW
CCNE1ENSG00000105173.9705.25250965.12700-0.452603.930103.03270K562GRSF1
CCNE1ENSG00000105173.9431.84990567.95590-0.395202.713301.65120K562HNRNPA1
CCNE1ENSG00000105173.9468.13390629.00340-0.426103.464202.46700K562HNRNPU
CCNE1ENSG00000105173.9282.96790415.70040-0.554902.934801.86950K562IGF2BP2
CCNE1ENSG00000105173.9213.48060417.05960-0.966106.423504.93640K562KRR1
CCNE1ENSG00000105173.9561.31650436.785200.361802.392801.60840K562MAGOH
CCNE1ENSG00000105173.9928.10980670.189900.469604.178903.02470K562MBNL1
CCNE1ENSG00000105173.9520.41410671.57430-0.367903.036802.19180K562MTPAP
CCNE1ENSG00000105173.9531.72840746.16530-0.488806.048905.00500K562NSUN2
CCNE1ENSG00000105173.9646.79660424.371600.607906.086205.13330K562PTBP1
CCNE1ENSG00000105173.9829.608401101.18120-0.408503.483102.57070K562PUF60
CCNE1ENSG00000105173.9884.172101171.37720-0.405804.148202.82430K562PUM1
CCNE1ENSG00000105173.9791.364901147.61750-0.536207.246705.66340K562PUM2
CCNE1ENSG00000105173.9955.63520559.081000.773308.508807.60480K562PUS1
CCNE1ENSG00000105173.9253.23900361.88350-0.515003.319001.34360K562QKI
CCNE1ENSG00000105173.9688.21750544.706500.337302.382401.82530K562RBM15
CCNE1ENSG00000105173.9245.82560412.43640-0.746504.456703.41650K562RPS19
CCNE1ENSG00000105173.9665.85050440.410800.596205.270003.77450K562SAFB
CCNE1ENSG00000105173.9497.22620736.29560-0.566406.500105.29470K562SF3A3
CCNE1ENSG00000105173.9313.17510464.50070-0.568703.180402.13510K562SF3B1
CCNE1ENSG00000105173.9451.64700336.286100.425402.828801.96400K562SF3B4
CCNE1ENSG00000105173.9971.16580754.352700.364404.147603.02570K562SRPK2
CCNE1ENSG00000105173.9558.93670416.036800.425902.846602.13110K562SRSF1
CCNE1ENSG00000105173.9513.14760785.97760-0.615104.895503.15370K562STAU1
CCNE1ENSG00000105173.9227.64300392.05500-0.784305.021503.61860K562SUPV3L1
CCNE1ENSG00000105173.9880.14170495.778800.8279012.0502010.33520K562SYNCRIP
CCNE1ENSG00000105173.9315.05600421.03230-0.418302.206301.56990K562TARDBP
CCNE1ENSG00000105173.9225.73090430.39640-0.931103.557002.49200K562TIAL1
CCNE1ENSG00000105173.9240.68820414.91620-0.785705.524104.03790K562UCHL5
CCNE1ENSG00000105173.9442.85380791.17600-0.8372011.5305010.18800K562UPF1
CCNE1ENSG00000105173.9461.33830676.98250-0.553305.004803.81260K562WDR3
CCNE1ENSG00000105173.9455.10160703.99570-0.629408.739807.32050K562WDR43
CCNE1ENSG00000105173.9249.68180422.46010-0.758705.482203.56510K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCNE1 is not available on ENCORE database.





6 RBPs can affect the splicing of CCNE1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCNE1ENSG00000105173.9chr19+3031290230313037303126283031272430313146303132580.114000.001270.02551includedK562SRSF1
SECCNE1ENSG00000105173.9chr19+303129023031303730312628303127243031314630313258-0.267000.000010.00027excludedK562AQR
SECCNE1ENSG00000105173.9chr19+303116083031175530308312303084483031262830312724-0.067000.004140.05384excludedK562PUS1
SECCNE1ENSG00000105173.9chr19+303129023031303730312628303127243031314630313258-0.302000.000610.03511excludedK562EFTUD2
A3SSCCNE1ENSG00000105173.9chr19+3030387530303944303038843030394430303595303036830.362000.000160.03961longerHepG2PTBP1
A3SSCCNE1ENSG00000105173.9chr19+3030387530303944303038843030394430303595303036830.341000.000020.00343longerHepG2SRSF1
A3SSCCNE1ENSG00000105173.9chr19+3031312630313258303131463031325830312902303130370.213000.000000.00003longerK562AQR
MXECCNE1ENSG00000105173.9chr19+30312540303127243031296230313037303083123030844830313146303132580.290000.001290.011411includedK562AQR
MXECCNE1ENSG00000105173.9chr19+30312628303127243031296230313037303083123030844830313146303132580.286000.002390.019371includedK562AQR
MXECCNE1ENSG00000105173.9chr19+30303438303034853030359530303683303029103030305930303875303039440.220000.003770.024121includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCNE1 is not avaliable on ENCORE database.