CCDC97

General Information

Gene Name       : CCDC97
Gene ID             : ENSG00000142039.3
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC97)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC97ENSG00000142039.36.9213.1710.04ENCSR000AEF
HepG2CCDC97ENSG00000142039.310.907.339.12ENCSR985KAT
K562CCDC97ENSG00000142039.39.536.618.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC97 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC97 RNA is bound by 12 proteins.  







eCLIP assay for CCDC97 is not avaliable on ENCORE database.





12 proteins are bound to CCDC97 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194182892841829003+3'-UTR4.0522012.54292HepG2PCBP2
chr194182938541829461+3'-UTR4.622964.63331HepG2XRN2
chr194182954341829614+3'-UTR3.926996.58753K562ILF3
chr194183036941830458+3'-UTR5.388457.56505HepG2LIN28B
chr194182880741828837+3'-UTR3.893084.69074K562PTBP1
chr194182951641829640+3'-UTR4.6029714.32541HepG2PCBP2
chr194182893641829033+3'-UTR4.337308.55453HepG2UPF1
chr194182919841829331+3'-UTR4.9108124.01054K562PTBP1
chr194182956541829623+3'-UTR3.281343.74491K562CSTF2T
chr194182919641829264+3'-UTR3.967363.08342HepG2AKAP1
chr194182949641829563+3'-UTR4.065763.82414HepG2HNRNPK
chr194182900341829043+3'-UTR4.810664.57427HepG2PCBP2
chr194182918941829361+3'-UTR3.5409213.35166K562UPF1
chr194182919141829292+3'-UTR4.5004019.08588HepG2PTBP1
chr194182913041829181+3'-UTR4.936828.54663K562PTBP1
chr194182893241829009+3'-UTR3.8702917.34431HepG2PTBP1
chr194182881341828932+3'-UTR4.6541124.91126HepG2PTBP1
chr194183037241830456+3'-UTR4.6049812.30997K562LIN28B
chr194182888941828925+3'-UTR4.246995.37650K562PTBP1
chr194182926441829348+3'-UTR4.297894.66439HepG2AKAP1
chr194182908741829134+3'-UTR5.187636.97910HepG2PCBP2
chr194182939441829485+3'-UTR3.429114.37279HepG2CSTF2T
chr194182888741829001+3'-UTR3.535083.20150HepG2AKAP1
chr194182929241829340+3'-UTR4.1201310.66089HepG2PTBP1
chr194182880641828853+3'-UTR4.171427.31085HepG2PCBP2
chr194182929541829339+3'-UTR3.010243.20756HepG2UPF1
chr194182955041829680+3'-UTR3.296624.34904K562UPF1
chr194182893441829011+3'-UTR5.0156217.19564K562PTBP1
chr194182884441829012+3'-UTR3.777157.56487K562MATR3
chr194182925541829318+3'-UTR5.431786.75862K562PCBP1
chr194181643941816539+intron-Distal5.057636.17200HepG2PCBP2
chr194181908441819171+intron-Distal3.724634.62831HepG2PCBP2
chr194181647041816597+intron-Distal5.9395614.82211HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC97 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC97 is not available on ENCORE database.

  • 97 RBPs can affect the levels of CCDC97.  








The Knockdown/knockout RNA-Seq assay for CCDC97 is not available on ENCORE database.





97 RBPs can affect the gene expression of CCDC97 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC97ENSG00000142039.3410.73020277.954300.563203.474002.36850HepG2ADAR
CCDC97ENSG00000142039.3572.63580430.976000.409902.156501.46860HepG2AKAP8L
CCDC97ENSG00000142039.3447.11080632.95770-0.501503.440102.68910HepG2AUH
CCDC97ENSG00000142039.3814.34220619.413400.394602.770902.17210HepG2BOP1
CCDC97ENSG00000142039.3265.32840481.06340-0.858404.977703.98010HepG2CALR
CCDC97ENSG00000142039.3381.66480568.65580-0.575203.922103.11700HepG2CPSF6
CCDC97ENSG00000142039.3488.28990396.755500.299402.143201.40200HepG2DDX19B
CCDC97ENSG00000142039.3428.79230310.393500.466102.748902.07210HepG2DDX21
CCDC97ENSG00000142039.3631.11940410.448600.620606.900705.92200HepG2DKC1
CCDC97ENSG00000142039.3464.24470279.891200.729907.272006.17450HepG2DNAJC21
CCDC97ENSG00000142039.3421.70100277.408900.604105.889804.99160HepG2DNAJC2
CCDC97ENSG00000142039.3553.47720342.033900.694304.900603.70460HepG2EEF2
CCDC97ENSG00000142039.3155.26790286.08990-0.881704.121502.75620HepG2AGO1
CCDC97ENSG00000142039.3677.44390462.141200.551703.490202.77390HepG2EIF4A3
CCDC97ENSG00000142039.3576.04330432.670600.412802.154001.56440HepG2G3BP1
CCDC97ENSG00000142039.3419.08200247.193300.761505.682804.39600HepG2GEMIN5
CCDC97ENSG00000142039.3470.15070282.572500.734405.846104.95330HepG2HNRNPA1
CCDC97ENSG00000142039.3546.91890314.306100.799107.031105.96740HepG2HNRNPC
CCDC97ENSG00000142039.3298.36130438.50510-0.555502.079001.46800HepG2HNRNPK
CCDC97ENSG00000142039.3530.45910390.624100.441402.961602.26620HepG2HNRNPL
CCDC97ENSG00000142039.3421.03820312.228400.431203.116702.47610HepG2HNRNPU
CCDC97ENSG00000142039.3443.73800634.70890-0.516402.884601.62320HepG2HSPD1
CCDC97ENSG00000142039.3639.06960439.741300.539203.582302.82440HepG2IGF2BP2
CCDC97ENSG00000142039.3440.74310318.931600.466604.158603.27760HepG2ILF2
CCDC97ENSG00000142039.3892.95360613.233900.542003.426502.50120HepG2LARP4
CCDC97ENSG00000142039.3641.16700480.335100.416602.176501.61260HepG2NCBP2
CCDC97ENSG00000142039.3557.56880425.253800.390703.068602.26610HepG2NOL12
CCDC97ENSG00000142039.3410.29710309.057100.408702.665101.83070HepG2PARN
CCDC97ENSG00000142039.3396.65850229.601500.788706.738404.87580HepG2PKM
CCDC97ENSG00000142039.3421.74360278.483400.598704.987504.02590HepG2PPIL4
CCDC97ENSG00000142039.3365.92520532.62550-0.541605.129804.11080HepG2PRPF4
CCDC97ENSG00000142039.3481.49800322.707100.577202.769201.55130HepG2PRPF6
CCDC97ENSG00000142039.3559.06710405.967000.461602.823302.22150HepG2PUF60
CCDC97ENSG00000142039.3608.99720430.981200.498706.034205.22770HepG2PUM1
CCDC97ENSG00000142039.3619.70110436.988900.503905.378904.57130HepG2PUS1
CCDC97ENSG00000142039.3375.32810484.06160-0.367002.043901.45860HepG2RBM25
CCDC97ENSG00000142039.3776.08660625.945600.310101.918301.33740HepG2RPLP0
CCDC97ENSG00000142039.3613.16670270.172001.1823013.7331012.49650HepG2RPS19
CCDC97ENSG00000142039.3509.75230340.394600.582502.628701.84700HepG2RPS2
CCDC97ENSG00000142039.3368.42170278.055300.405902.573101.94760HepG2SAFB2
CCDC97ENSG00000142039.3443.99370271.128100.711505.027303.77040HepG2SERBP1
CCDC97ENSG00000142039.3674.83600245.943301.456105.408803.37880HepG2SF1
CCDC97ENSG00000142039.3428.47830608.89750-0.507003.451202.67150HepG2SF3B1
CCDC97ENSG00000142039.3615.71560239.112501.364504.441202.53680HepG2SFPQ
CCDC97ENSG00000142039.3443.12800324.263000.450503.618602.89920HepG2SMN1
CCDC97ENSG00000142039.3331.85080435.40650-0.391802.713202.16570HepG2SRSF9
CCDC97ENSG00000142039.3761.69490595.617100.354702.710102.20090HepG2SSB
CCDC97ENSG00000142039.3643.98610455.867700.498305.827004.98460HepG2SUCLG1
CCDC97ENSG00000142039.3430.62660303.401700.505101.819101.39610HepG2TIAL1
CCDC97ENSG00000142039.31075.72430575.319600.9028019.9810018.59160HepG2UTP3
CCDC97ENSG00000142039.3307.86920758.72770-1.3013024.9788023.38340K562AGGF1
CCDC97ENSG00000142039.3608.59050833.64190-0.454003.910802.69820K562AKAP8
CCDC97ENSG00000142039.3344.46390789.46960-1.1965018.7075016.71600K562AKAP8L
CCDC97ENSG00000142039.3991.12140350.017901.5015027.5383025.88670K562AQR
CCDC97ENSG00000142039.3577.57690828.30410-0.520106.067004.64690K562ATP5C1
CCDC97ENSG00000142039.3561.78180369.236900.605404.254903.16460K562BOP1
CCDC97ENSG00000142039.3452.23450253.546500.834703.144602.00390K562CCAR1
CCDC97ENSG00000142039.3688.83370439.808200.647203.320402.13640K562CNOT7
CCDC97ENSG00000142039.3805.30420494.568800.7033010.457809.28310K562DDX47
CCDC97ENSG00000142039.3431.18250283.856700.603003.981502.33810K562DHX30
CCDC97ENSG00000142039.3548.78550849.65720-0.630608.783007.05520K562DKC1
CCDC97ENSG00000142039.3381.23070272.643500.483502.696401.37260K562DNAJC21
CCDC97ENSG00000142039.3650.58710424.083400.617306.854305.79630K562EIF2S2
CCDC97ENSG00000142039.3556.92950257.895901.110607.504605.80390K562EIF3A
CCDC97ENSG00000142039.3316.72110147.467001.102704.119103.11930K562EIF4A3
CCDC97ENSG00000142039.3600.42410449.879700.416303.227402.21540K562EIF4G2
CCDC97ENSG00000142039.3597.01960428.353600.478903.304902.37350K562FIP1L1
CCDC97ENSG00000142039.3406.24130153.355001.4054011.7496010.59220K562FXR1
CCDC97ENSG00000142039.3752.52210565.116500.413102.930802.15430K562GRSF1
CCDC97ENSG00000142039.3443.97400313.435100.502203.529702.30960K562HNRNPA1
CCDC97ENSG00000142039.3640.79370246.204101.3799020.7286019.16810K562HNRNPC
CCDC97ENSG00000142039.384.96580165.50440-0.961904.211702.64610K562HNRNPK
CCDC97ENSG00000142039.3607.42600446.933200.442503.249802.09590K562HNRNPL
CCDC97ENSG00000142039.3555.20610352.300200.656104.528403.31520K562HNRNPM
CCDC97ENSG00000142039.3773.85020580.794000.413902.724001.93510K562HSPD1
CCDC97ENSG00000142039.3389.53760837.89800-1.105006.310404.94770K562KIF1C
CCDC97ENSG00000142039.3381.61650249.697700.611803.713501.95880K562LIN28B
CCDC97ENSG00000142039.3273.19230173.799300.652403.964902.84640K562MATR3
CCDC97ENSG00000142039.3536.13150938.64720-0.8080010.043708.10640K562MBNL1
CCDC97ENSG00000142039.3594.89310379.511900.648406.781305.56310K562MTPAP
CCDC97ENSG00000142039.3269.87840657.91720-1.285605.121003.79650K562NAA15
CCDC97ENSG00000142039.3535.58200421.695800.344802.572201.84890K562NSUN2
CCDC97ENSG00000142039.3640.47260422.527100.600003.282601.92030K562PABPC1
CCDC97ENSG00000142039.3263.30910491.85620-0.901503.890302.66090K562PABPN1
CCDC97ENSG00000142039.3106.42390170.22340-0.677602.980901.57800K562PCBP1
CCDC97ENSG00000142039.387.80060154.95350-0.819503.157802.11310K562PCBP2
CCDC97ENSG00000142039.3339.34490240.368300.497402.990301.50080K562PHF6
CCDC97ENSG00000142039.3292.45520169.196500.789405.770704.83960K562PTBP1
CCDC97ENSG00000142039.31148.43150490.858401.2262019.4450017.20620K562PUF60
CCDC97ENSG00000142039.3662.94970511.561100.373902.942201.95440K562PUM2
CCDC97ENSG00000142039.3221.15420783.08710-1.8241031.7994029.93940K562PUS1
CCDC97ENSG00000142039.3326.65580762.87620-1.2237021.7094019.98630K562RBM15
CCDC97ENSG00000142039.3257.54920162.248300.666503.745502.75480K562RBM22
CCDC97ENSG00000142039.3438.57640201.396701.1227012.1032010.01370K562RCC2
CCDC97ENSG00000142039.3644.81180329.302800.9694011.819709.70000K562SAFB
CCDC97ENSG00000142039.3250.48760449.92790-0.845003.176501.86220K562SF1
CCDC97ENSG00000142039.3541.76000416.070400.380702.551201.76660K562SF3A3
CCDC97ENSG00000142039.3303.91270516.53920-0.765202.775201.54370K562SNRNP200
CCDC97ENSG00000142039.3320.88590190.919300.749004.676303.24520K562SRFBP1
CCDC97ENSG00000142039.3245.45460165.867100.565302.699802.00020K562SRSF1
CCDC97ENSG00000142039.3387.12900233.738000.727804.933303.46110K562SRSF4
CCDC97ENSG00000142039.3273.94170156.644400.806305.191303.67180K562SRSF5
CCDC97ENSG00000142039.3678.61750370.651000.8724011.334309.68470K562SYNCRIP
CCDC97ENSG00000142039.3241.69360167.872400.525702.339501.68620K562TARDBP
CCDC97ENSG00000142039.3283.14130161.930800.806005.310204.12480K562TIA1
CCDC97ENSG00000142039.3382.55950212.322000.849305.980904.55110K562TIAL1
CCDC97ENSG00000142039.3324.72170225.558100.525602.803701.84950K562TRIM56
CCDC97ENSG00000142039.3624.01040447.131100.480804.661203.75360K562UPF1
CCDC97ENSG00000142039.3482.39440793.81710-0.718603.379301.89790K562UTP18
CCDC97ENSG00000142039.3559.33600382.599100.547804.467903.34260K562WDR3
CCDC97ENSG00000142039.3523.76140394.297700.409502.557601.73400K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC97 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CCDC97 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CCDC97 is not avaliable on ENCORE database.