C11orf58

General Information

Gene Name       : C11orf58
Gene ID             : ENSG00000110696.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C11orf58)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C11orf58ENSG00000110696.998.72141.90120.31ENCSR000AEF
HepG2C11orf58ENSG00000110696.9151.81145.68148.75ENCSR985KAT
K562C11orf58ENSG00000110696.9167.58163.38165.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C11orf58 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C11orf58 RNA is bound by 24 proteins.  







eCLIP assay for C11orf58 is not avaliable on ENCORE database.





24 proteins are bound to C11orf58 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr111677641516776452+3'-UTR,CDS,intron-Proximal3.0973412.09972K562ZNF622
chr111677645316776563+3'-UTR,CDS3.7535714.42323HepG2GRWD1
chr111677711316777182+3'-UTR3.7378013.20874K562FAM120A
chr111677644916776532+3'-UTR,CDS6.0606020.21564K562LIN28B
chr111677646416776593+3'-UTR,CDS3.740808.14124HepG2ZNF800
chr111677667316776712+3'-UTR4.8285712.35914K562PABPC4
chr111677641516776457+3'-UTR,CDS,intron-Proximal3.3069213.76394HepG2BCLAF1
chr111677739916777453+3'-UTR4.1854314.26407K562UPF1
chr111677741716777456+3'-UTR4.456097.76684K562FAM120A
chr111677735816777417+3'-UTR3.426645.98267K562FAM120A
chr111677737416777399+3'-UTR3.105217.72714K562UPF1
chr111677645716776614+3'-UTR,CDS3.8285522.00299HepG2BCLAF1
chr111677758716777629+3'-UTR4.002625.15345K562UPF1
chr111677641616776424+3'-UTR,CDS,intron-Proximal3.010558.43119K562UCHL5
chr111677671216776737+3'-UTR5.0788410.95110K562PABPC4
chr111677641416776466+3'-UTR,CDS,intron-Proximal3.661856.67248K562ZNF800
chr111677651416776594+3'-UTR,CDS3.3959910.29183K562ZNF800
chr111677641716776453+3'-UTR,CDS,intron-Proximal3.403536.42940HepG2GRWD1
chr111677645716776555+3'-UTR,CDS3.404494.42632HepG2UCHL5
chr111677760016777621+3'-UTR4.476834.36811K562FAM120A
chr111677646616776514+3'-UTR,CDS3.311349.17413K562ZNF800
chr111677645216776593+3'-UTR,CDS3.5532127.68311K562ZNF622
chr111677656316776673+3'-UTR,CDS3.244876.18987HepG2GRWD1
chr111677669416776727+3'-UTR3.456093.68882K562FAM120A
chr111676032016760366+5'-UTR,CDS,intron-Distal3.139917.29414K562GRWD1
chr111676027016760389+5'-UTR,CDS,intron-Distal,intron-Proximal3.155093.55519K562SRSF7
chr111676021516760359+5'-UTR,CDS,intron-Distal4.3178411.07420K562GEMIN5
chr111676614816766208+5'-UTR,CDS,intron-Distal3.289927.33138HepG2BCLAF1
chr111676023416760300+5'-UTR,intron-Distal3.104253.87595K562RBM15
chr111676036316760389+5'-UTR,CDS,intron-Distal,intron-Proximal3.073904.88466K562UCHL5
chr111676620816766232+5'-UTR,CDS,intron-Distal,intron-Proximal4.402277.53358HepG2BCLAF1
chr111676027716760361+5'-UTR,CDS,intron-Distal3.157746.12694HepG2RBM15
chr111676022116760343+5'-UTR,CDS,intron-Distal3.222654.51093K562NCBP2
chr111676022616760363+5'-UTR,CDS,intron-Distal3.4858622.45250K562UCHL5
chr111676620316766232+5'-UTR,CDS,intron-Distal,intron-Proximal3.334729.21267K562UCHL5
chr111676029816760320+5'-UTR,intron-Distal3.296568.27709K562GRWD1
chr111676614216766272+5'-UTR,CDS,intron-Distal,intron-Proximal3.626764.70265HepG2AQR
chr111676019916760292+5'-UTR,intron-Distal4.4166948.13989K562DDX3X
chr111676620416766233+5'-UTR,CDS,intron-Distal,intron-Proximal3.658814.88141HepG2GRWD1
chr111676029816760362+5'-UTR,CDS,intron-Distal3.7250637.09453K562DDX3X
chr111676028816760390+5'-UTR,CDS,intron-Distal,intron-Proximal3.4301122.27696HepG2GRWD1
chr111677433016774380+CDS,intron-Proximal3.603974.17990K562CPSF6
chr111677439816774442+CDS,intron-Proximal3.7427813.66720K562UCHL5
chr111676963916769675+CDS,intron-Distal,intron-Proximal3.448828.43208HepG2BCLAF1
chr111677432916774387+CDS,intron-Proximal3.229999.44659K562ZNF622
chr111676968816769705+CDS,intron-Distal,intron-Proximal3.184109.50920K562UCHL5
chr111677431216774384+CDS,intron-Proximal3.094783.73743HepG2TRA2A
chr111677441016774443+CDS,intron-Proximal3.5372811.47503HepG2BCLAF1
chr111677433016774341+CDS,intron-Proximal3.247956.72164K562UCHL5
chr111676964216769706+CDS,intron-Distal,intron-Proximal3.403066.90893HepG2GRWD1
chr111677432816774400+CDS,intron-Proximal3.423579.60326HepG2BCLAF1
chr111677434316774398+CDS4.0106511.94097K562UCHL5
chr111676965416769688+CDS,intron-Distal3.4395611.37435K562UCHL5
chr111676966016769708+CDS,intron-Distal,intron-Proximal3.3274210.89712K562ZNF622
chr111677432616774397+CDS,intron-Proximal3.628747.44851HepG2GRWD1
chr111676964216769660+CDS,intron-Distal,intron-Proximal3.775889.12722K562ZNF622
chr111676967716769705+CDS,intron-Distal,intron-Proximal3.111394.95190K562GRWD1
chr111676964216769654+CDS,intron-Distal,intron-Proximal3.774847.50303K562UCHL5
chr111676044916760509+intron-Distal,intron-Proximal3.293205.77728HepG2EFTUD2
chr111677798916778098+intron-Distal,intron-Proximal4.276495.36498HepG2UPF1
chr111677121216771266+intron-Distal3.589953.37821K562XRCC6
chr111676628716766367+intron-Distal,intron-Proximal4.131423.31283K562PRPF8
chr111676219616762259+intron-Distal3.196264.17082HepG2ILF3
chr111677808316778141+intron-Distal4.879583.78860K562AKAP1
chr111676043316760511+intron-Distal,intron-Proximal3.186413.29499HepG2PRPF4
chr111676045416760525+intron-Distal,intron-Proximal3.328743.26775HepG2TAF15
chr111677815516778212+intron-Distal3.376143.73678HepG2UPF1
chr111677794116778000+intron-Proximal4.607423.18753K562AKAP1
chr111677792716777987+intron-Proximal4.580753.45012HepG2UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C11orf58 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C11orf58 is not available on ENCORE database.

  • 74 RBPs can affect the levels of C11orf58.  








The Knockdown/knockout RNA-Seq assay for C11orf58 is not available on ENCORE database.





74 RBPs can affect the gene expression of C11orf58 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C11orf58ENSG00000110696.54431.906603462.527300.356002.489101.98220HepG2AKAP1
C11orf58ENSG00000110696.53714.402402864.924100.374503.160802.32050HepG2ASCC1
C11orf58ENSG00000110696.51330.521002463.85890-0.8889016.4900015.20680HepG2BOP1
C11orf58ENSG00000110696.52801.605902304.067300.282002.869402.08560HepG2CALR
C11orf58ENSG00000110696.54013.180702721.883700.560006.765005.58980HepG2CIRBP
C11orf58ENSG00000110696.51858.321702283.65150-0.297305.139804.28470HepG2CKAP4
C11orf58ENSG00000110696.51786.907302261.97860-0.340102.821002.12800HepG2CPSF6
C11orf58ENSG00000110696.51897.674801507.187900.332302.987801.87220HepG2CSTF2
C11orf58ENSG00000110696.52397.215801906.024800.330703.298702.29720HepG2DDX24
C11orf58ENSG00000110696.54940.764503316.782200.574806.616305.69050HepG2DDX3X
C11orf58ENSG00000110696.52656.002302185.198600.281404.011603.22580HepG2DKC1
C11orf58ENSG00000110696.51790.449002054.12790-0.198202.562101.93050HepG2DNAJC2
C11orf58ENSG00000110696.52685.810302033.430900.401303.727702.66910HepG2EEF2
C11orf58ENSG00000110696.52204.954802738.98610-0.312902.230401.69220HepG2EIF2S1
C11orf58ENSG00000110696.52043.984301650.777500.308102.257701.43320HepG2EIF3D
C11orf58ENSG00000110696.52280.079001839.674500.309502.948001.83730HepG2EIF3G
C11orf58ENSG00000110696.53762.485502947.173700.352301.982501.39320HepG2EIF4B
C11orf58ENSG00000110696.52061.482001580.855400.382903.839402.92240HepG2FUBP3
C11orf58ENSG00000110696.52125.109102833.06640-0.414803.301102.57850HepG2G3BP1
C11orf58ENSG00000110696.51918.577402327.21110-0.278602.243301.61240HepG2HNRNPC
C11orf58ENSG00000110696.52415.075002907.74620-0.267801.965001.35330HepG2HNRNPF
C11orf58ENSG00000110696.52411.062303168.35730-0.3941010.506809.27160HepG2HNRNPL
C11orf58ENSG00000110696.51959.205502447.04740-0.320802.412001.81880HepG2HNRNPLL
C11orf58ENSG00000110696.5871.972401816.74160-1.0590023.5504021.31230HepG2HNRNPM
C11orf58ENSG00000110696.52400.905802863.33100-0.254102.106601.46820HepG2IGF2BP1
C11orf58ENSG00000110696.52364.368501850.771400.353203.018702.17800HepG2PRPF8
C11orf58ENSG00000110696.53481.398302244.011900.633503.890503.05800HepG2RAVER1
C11orf58ENSG00000110696.55077.639603631.098900.4837011.0317010.14740HepG2RBM22
C11orf58ENSG00000110696.53385.892202613.179300.373604.508603.66480HepG2RBM25
C11orf58ENSG00000110696.51615.002102058.76410-0.350206.070705.17240HepG2SAFB2
C11orf58ENSG00000110696.51220.121801612.19560-0.402003.236802.21740HepG2SERBP1
C11orf58ENSG00000110696.54109.636102659.557300.627705.521604.54990HepG2SF3A3
C11orf58ENSG00000110696.53218.460102767.896900.217502.883102.28180HepG2SF3B4
C11orf58ENSG00000110696.54051.236602695.029900.588003.848202.91960HepG2SNRNP70
C11orf58ENSG00000110696.55043.028904101.272000.298106.224905.55650HepG2SRFBP1
C11orf58ENSG00000110696.54835.066602889.148600.7428031.1963029.98670HepG2SRSF1
C11orf58ENSG00000110696.52626.781702350.530900.160201.775701.31620HepG2SRSF9
C11orf58ENSG00000110696.54011.055803561.013900.171602.305401.82770HepG2SSB
C11orf58ENSG00000110696.53308.492303696.63830-0.160002.319401.74000HepG2SUCLG1
C11orf58ENSG00000110696.51872.862102384.95430-0.348702.989102.23910HepG2TARDBP
C11orf58ENSG00000110696.52811.728002386.153400.236702.206901.45750HepG2TIA1
C11orf58ENSG00000110696.51505.245902266.45560-0.5904014.4780013.33080HepG2TRIM56
C11orf58ENSG00000110696.53146.057102252.407700.482005.516004.64630HepG2U2AF1
C11orf58ENSG00000110696.51427.226102186.93140-0.615704.043902.81990HepG2UPF2
C11orf58ENSG00000110696.52740.505202277.155100.267103.838003.15070HepG2UTP3
C11orf58ENSG00000110696.52122.825101717.312900.305705.074104.21220HepG2ZC3H8
C11orf58ENSG00000110696.53079.110702594.031000.247204.533903.87840HepG2ZNF622
C11orf58ENSG00000110696.53229.042303809.79960-0.238601.899101.35380K562AKAP8L
C11orf58ENSG00000110696.52508.198103268.12270-0.381807.783106.14520K562BCLAF1
C11orf58ENSG00000110696.51780.578902728.93260-0.616007.785906.28950K562BOP1
C11orf58ENSG00000110696.51094.780601455.85480-0.411203.347202.16420K562CCAR1
C11orf58ENSG00000110696.52969.541504164.90210-0.488004.501702.58690K562CKAP4
C11orf58ENSG00000110696.52052.666202901.62950-0.499407.360306.07460K562CPSF6
C11orf58ENSG00000110696.51956.120102479.35800-0.342004.486103.09950K562CSTF2
C11orf58ENSG00000110696.52809.415103393.49330-0.272503.577002.19880K562DDX21
C11orf58ENSG00000110696.56403.482004977.445100.363407.923306.89800K562DDX47
C11orf58ENSG00000110696.51887.403002498.23090-0.404504.773203.05930K562EXOSC5
C11orf58ENSG00000110696.52318.623702952.35630-0.348603.059402.15580K562FMR1
C11orf58ENSG00000110696.52008.518102502.39580-0.317202.335101.50030K562FTO
C11orf58ENSG00000110696.53259.270702492.104800.387106.630905.75180K562FXR1
C11orf58ENSG00000110696.52167.807202770.33500-0.353803.491402.60310K562GPKOW
C11orf58ENSG00000110696.51988.303802904.61520-0.546803.684603.00870K562HNRNPC
C11orf58ENSG00000110696.51896.925002593.23470-0.451102.906401.73540K562HNRNPF
C11orf58ENSG00000110696.53606.724804498.14720-0.318603.423602.23160K562HNRNPL
C11orf58ENSG00000110696.51802.498603207.84440-0.8316011.764509.51420K562HNRNPM
C11orf58ENSG00000110696.51346.101402365.53920-0.813408.554206.80100K562KRR1
C11orf58ENSG00000110696.52012.071302704.15910-0.426505.139503.92580K562METAP2
C11orf58ENSG00000110696.53092.700303856.39940-0.318408.971507.73260K562NSUN2
C11orf58ENSG00000110696.52047.854602858.96400-0.481403.076201.55200K562NUSAP1
C11orf58ENSG00000110696.53462.990302588.547800.419804.570103.60610K562PRPF8
C11orf58ENSG00000110696.51714.334602604.12760-0.603204.190603.04390K562PSIP1
C11orf58ENSG00000110696.51549.526402375.13770-0.616204.389903.13890K562RCC2
C11orf58ENSG00000110696.53668.164302637.125700.476004.217503.20560K562RPS19
C11orf58ENSG00000110696.52069.424502634.71280-0.348402.483601.56440K562SF3B1
C11orf58ENSG00000110696.51573.549602251.64900-0.517002.403901.46510K562SRFBP1
C11orf58ENSG00000110696.52534.780703898.43730-0.6210023.7956021.49780K562SRPK2
C11orf58ENSG00000110696.51410.521901722.90000-0.288602.376001.41060K562SRSF4
C11orf58ENSG00000110696.52563.137903200.76130-0.320502.810001.75040K562SRSF5
C11orf58ENSG00000110696.52571.055703028.33110-0.236202.807801.63170K562SRSF7
C11orf58ENSG00000110696.52797.783303309.04800-0.242102.218501.49220K562TIA1
C11orf58ENSG00000110696.51919.061302504.83120-0.384302.188401.36560K562TIAL1
C11orf58ENSG00000110696.51734.849702660.17610-0.616704.764503.44380K562TRIM56
C11orf58ENSG00000110696.53198.578604089.01460-0.354307.630806.51120K562UPF1
C11orf58ENSG00000110696.52943.088203498.85280-0.249602.301501.50140K562WDR3
C11orf58ENSG00000110696.54490.879703638.317300.303606.323005.09340K562WDR43
C11orf58ENSG00000110696.52041.250802700.91270-0.404002.515801.37930K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C11orf58 is not available on ENCORE database.





4 RBPs can affect the splicing of C11orf58 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC11orf58ENSG00000110696.5chr11+167696431676970416766079167662311677433116774382-0.077000.000000.00000excludedK562AQR
MXEC11orf58ENSG00000110696.5chr11+16766147167662311676967116769704167601931676025316774331167743910.145000.000000.000001includedK562AQR
MXEC11orf58ENSG00000110696.5chr11+16766147167662311676967116769704167601931676029316774331167743910.141000.000000.000001includedK562AQR
MXEC11orf58ENSG00000110696.5chr11+1676614716766181167696711676970416760193167602931677641716776893-0.251000.008240.054132includedK562AQR
MXEC11orf58ENSG00000110696.5chr11+1676959516769704167743311677439116766147167662311677641716776893-0.486000.009130.058792includedK562AQR
MXEC11orf58ENSG00000110696.5chr11+1676959516769704167743311677438216766147167662311677641716776893-0.477000.007160.048332includedK562AQR
MXEC11orf58ENSG00000110696.5chr11+1676955316769704167743311677439116766147167662311677641716776893-0.486000.009130.058792includedK562AQR
MXEC11orf58ENSG00000110696.5chr11+1676955316769704167743311677438216766147167662311677641716776893-0.477000.007160.048332includedK562AQR
MXEC11orf58ENSG00000110696.5chr11+16766147167662311677433116774441167602041676038816776417167766140.107000.000580.022531includedHepG2XRN2
MXEC11orf58ENSG00000110696.5chr11+16766147167662311676967116769704167601931676025316774331167744410.058000.000110.003451includedK562HNRNPC
MXEC11orf58ENSG00000110696.5chr11+16766147167662311676967116769704167601931676025316774331167744410.053000.000210.005741includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C11orf58 is not avaliable on ENCORE database.