BARD1

General Information

Gene Name       : BARD1
Gene ID             : ENSG00000138376.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BARD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BARD1ENSG00000138376.1017.3915.7916.59ENCSR000AEF
HepG2BARD1ENSG00000138376.1012.698.1210.40ENCSR985KAT
K562BARD1ENSG00000138376.104.604.254.42ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq BARD1-BGKcLV23-K562ENCSR427KVGBARD1K562ReleasedENCSR877JEM   CRISPRKD% = 63.9,61.1
knockdown followed by RNA-seq BARD1-BGHcLV25-HepG2ENCSR104RTMBARD1HepG2ReleasedENCSR953VMB   CRISPRKD% = 76.4,70.8






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
BARD1ENCAB064JSLPA5-85707UK2890668DBGKcLV23-21, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
BARD1K562CRISPRBGKcLV23-19,BGKcLV23-20BGKcLV23-1,BGKcLV23-257.0,45.3NotSatisfiedENCODE4
BARD1K562CRISPRENCSR427KVGENCSR877JEMBARD1-BGKcLV23-21,BARD1-BGKcLV23-22NT-BGKcLV23-1,NT-BGKcLV23-263.9,61.1ReleasedENCODE4
BARD1HepG2CRISPRBGHcLV24-15,BGHcLV24-16BGHcLV24-1,BGHcLV24-2NotSatisfiedENCODE4
BARD1HepG2CRISPRBGHcLV24-17,BGHcLV24-18BGHcLV24-1,BGHcLV24-2NotSatisfiedENCODE4
BARD1HepG2CRISPRBGHcLV25-23,BGHcLV25-24BGHcLV25-1,BGHcLV25-242.3,58.2NotSatisfiedENCODE4
BARD1HepG2CRISPRBGHcLV25-25,BGHcLV25-26BGHcLV25-1,BGHcLV25-20.0,0.0NotSatisfiedENCODE4
BARD1HepG2CRISPRENCSR104RTMENCSR953VMBBARD1-BGHcLV25-27,BARD1-BGHcLV25-28NT-BGHcLV25-1,NT-BGHcLV25-276.4,70.8ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
BARD1Product_ID: PA5-85707
Lot_ID: UK2890668D
Source: Thermo Fisher
Target Name: BARD1-human		 BARD1-K562-CRISPR-PA5-85707.png<br>Caption: Western blot following CRISPR against BARD1 in K562 whole cell lysate using BARD1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against BARD1. BARD1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for BARD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BARD1 RNA is bound by 9 proteins.  







eCLIP assay for BARD1 is not avaliable on ENCORE database.





9 proteins are bound to BARD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2215646078215646219-5'-UTR,CDS,intron-Distal4.811365.17013K562RBM15
chr2215674266215674357-5'-UTR,CDS,intron-Distal3.950083.14999HepG2GRWD1
chr2215645697215645780-5'-UTR,CDS,intron-Distal4.754074.37348HepG2BCLAF1
chr2215645894215646027-5'-UTR,CDS,intron-Distal3.568366.74842K562ZNF622
chr2215661745215661812-5'-UTR,CDS,intron-Distal,intron-Proximal4.999846.35567HepG2PRPF8
chr2215674260215674363-5'-UTR,CDS,intron-Distal5.428599.68097K562RBM15
chr2215661593215661757-intron-Distal,intron-Proximal3.668798.04002K562KHSRP
chr2215637955215638027-intron-Distal3.723513.24603K562KHSRP
chr2215657222215657315-intron-Distal,intron-Proximal4.007033.24603K562KHSRP
chr2215638301215638362-intron-Distal3.891244.31191HepG2CSTF2
chr2215609169215609329-intron-Distal4.431035.25174K562KHSRP
chr2215656129215656237-intron-Distal3.784945.14864K562KHSRP
chr2215646873215646924-intron-Distal3.940583.02234K562KHSRP
chr2215664863215664933-intron-Distal3.381543.35377HepG2QKI
chr2215622141215622250-intron-Distal4.280733.71677HepG2HNRNPL
chr2215646417215646535-intron-Distal3.632513.90146K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BARD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BARD1 is not available on ENCORE database.

  • 102 RBPs can affect the levels of BARD1.  








The Knockdown/knockout RNA-Seq assay for BARD1 is not available on ENCORE database.





102 RBPs can affect the gene expression of BARD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BARD1ENSG00000138376.6193.46110341.26220-0.818807.690806.77950HepG2ACO1
BARD1ENSG00000138376.6195.48080315.98820-0.692803.305302.73090HepG2AKAP1
BARD1ENSG00000138376.6250.33900342.91310-0.454002.861302.08280HepG2AKAP8L
BARD1ENSG00000138376.6130.13500261.44590-1.006506.105604.96090HepG2ASCC1
BARD1ENSG00000138376.6254.22730434.69010-0.773907.525506.48340HepG2AUH
BARD1ENSG00000138376.6190.58980344.63180-0.854603.175302.17110HepG2BCCIP
BARD1ENSG00000138376.6160.37740299.51570-0.901202.926002.00010HepG2BCLAF1
BARD1ENSG00000138376.641.37500289.99110-2.8092031.9262030.27740HepG2BOP1
BARD1ENSG00000138376.6212.23480413.50230-0.962209.397108.10020HepG2CALR
BARD1ENSG00000138376.6166.90880248.39410-0.573602.414501.68730HepG2CIRBP
BARD1ENSG00000138376.6107.87540341.24520-1.6614023.7663022.24870HepG2CKAP4
BARD1ENSG00000138376.6124.25690266.22010-1.099307.414506.33170HepG2CPSF6
BARD1ENSG00000138376.6284.20560419.90560-0.563104.658503.86310HepG2CELF1
BARD1ENSG00000138376.6300.18170451.59280-0.589204.433803.53030HepG2DAZAP1
BARD1ENSG00000138376.6226.79660315.64490-0.476903.313502.40920HepG2DDX19B
BARD1ENSG00000138376.6166.64160262.26730-0.654303.502602.74730HepG2DDX21
BARD1ENSG00000138376.6144.32340302.67610-1.068506.705405.77280HepG2DDX3X
BARD1ENSG00000138376.6126.32290338.81460-1.423406.761805.61640HepG2DDX55
BARD1ENSG00000138376.6198.49470302.31490-0.607002.190001.32420HepG2DDX59
BARD1ENSG00000138376.6189.16370343.40550-0.860306.199704.74510HepG2DDX5
BARD1ENSG00000138376.693.98920260.04430-1.4682010.317809.20700HepG2DDX6
BARD1ENSG00000138376.6177.27930271.90460-0.617103.310202.24220HepG2DHX30
BARD1ENSG00000138376.6177.51190281.91060-0.667304.340803.47640HepG2DNAJC21
BARD1ENSG00000138376.6159.24090279.42980-0.811306.743205.78830HepG2DNAJC2
BARD1ENSG00000138376.684.82060249.94790-1.5591011.3745010.22020HepG2EIF2S1
BARD1ENSG00000138376.6120.58100220.78910-0.872704.119903.03140HepG2EIF3D
BARD1ENSG00000138376.6165.67860268.95840-0.699002.840502.14450HepG2EIF4B
BARD1ENSG00000138376.6272.95740426.72230-0.644604.584403.55330HepG2EIF4G2
BARD1ENSG00000138376.6284.33340499.05460-0.811608.970907.99260HepG2ETF1
BARD1ENSG00000138376.6185.59840333.52490-0.845606.541105.25850HepG2EWSR1
BARD1ENSG00000138376.6117.92810266.69210-1.177304.288503.02950HepG2FTO
BARD1ENSG00000138376.6378.86560278.734300.442701.996201.40420HepG2FXR1
BARD1ENSG00000138376.6175.95610258.53690-0.555202.391701.77020HepG2G3BP1
BARD1ENSG00000138376.6150.73730301.76050-1.001406.278105.34030HepG2GPKOW
BARD1ENSG00000138376.6167.93150284.61150-0.761104.294803.51400HepG2HNRNPA1
BARD1ENSG00000138376.6312.37790414.98270-0.409802.870601.92110HepG2HNRNPA2B1
BARD1ENSG00000138376.6201.98490316.58050-0.648303.496702.72330HepG2HNRNPC
BARD1ENSG00000138376.6161.69530254.27500-0.653104.395503.51440HepG2HNRNPF
BARD1ENSG00000138376.6176.92760287.97740-0.702803.651702.93810HepG2HNRNPLL
BARD1ENSG00000138376.6243.79000314.48720-0.367401.943601.42660HepG2HNRNPU
BARD1ENSG00000138376.6183.20330250.38410-0.450702.327301.66140HepG2IGF2BP1
BARD1ENSG00000138376.693.61310262.78640-1.4891011.5333010.25590HepG2IGF2BP2
BARD1ENSG00000138376.6200.16100321.23780-0.682505.747104.72440HepG2ILF2
BARD1ENSG00000138376.6241.92750461.50160-0.931806.724605.41490HepG2LARP4
BARD1ENSG00000138376.6183.86080310.96890-0.758202.520701.48220HepG2NONO
BARD1ENSG00000138376.6176.47500255.53990-0.534102.252901.59630HepG2PABPC4
BARD1ENSG00000138376.6203.05340311.28500-0.616404.196403.17840HepG2PARN
BARD1ENSG00000138376.6159.47710332.66680-1.060706.834205.26770HepG2PCBP2
BARD1ENSG00000138376.6104.98490261.53050-1.316806.023904.88340HepG2PRPF8
BARD1ENSG00000138376.6228.50710427.43280-0.903508.425107.46080HepG2PUF60
BARD1ENSG00000138376.6238.49190453.70920-0.9278012.6227011.55170HepG2PUM1
BARD1ENSG00000138376.6328.79480453.39620-0.463603.264702.53630HepG2PUM2
BARD1ENSG00000138376.6115.45710417.12310-1.8531026.3886025.11730HepG2RBM22
BARD1ENSG00000138376.6247.71430142.210800.800503.721801.94930HepG2RBM47
BARD1ENSG00000138376.6403.23070276.531900.544103.705603.09740HepG2NELFE
BARD1ENSG00000138376.6381.91160257.545600.568303.985403.26290HepG2RECQL
BARD1ENSG00000138376.671.20350273.97890-1.9440019.8643018.37450HepG2RPLP0
BARD1ENSG00000138376.6159.50470315.31450-0.983205.583004.26540HepG2RPS10
BARD1ENSG00000138376.687.91000214.81850-1.289008.674107.65860HepG2RPS19
BARD1ENSG00000138376.6181.26110343.96900-0.924206.127604.96120HepG2RPS2
BARD1ENSG00000138376.681.02380258.72380-1.675008.084906.82910HepG2RRP9
BARD1ENSG00000138376.6192.64350280.06310-0.539803.258002.57000HepG2SAFB2
BARD1ENSG00000138376.6134.97400215.63390-0.675902.926301.95700HepG2SERBP1
BARD1ENSG00000138376.696.01250285.02880-1.5698013.1394011.71560HepG2SF3B1
BARD1ENSG00000138376.6200.52570326.59810-0.703705.839504.95920HepG2SMN1
BARD1ENSG00000138376.6187.13250327.14500-0.805904.657903.38400HepG2SMNDC1
BARD1ENSG00000138376.6156.76100317.14880-1.016605.284804.19460HepG2SNRNP70
BARD1ENSG00000138376.6216.76090471.13540-1.1200015.5336014.59950HepG2SRFBP1
BARD1ENSG00000138376.6395.00280270.025500.548703.776403.24560HepG2SRSF1
BARD1ENSG00000138376.6249.61730421.99210-0.757507.656806.68330HepG2SRSF5
BARD1ENSG00000138376.6138.06850249.83120-0.855606.504205.50980HepG2SRSF7
BARD1ENSG00000138376.6130.78450219.67750-0.748204.595303.91700HepG2SRSF9
BARD1ENSG00000138376.6135.57680224.70180-0.728903.445302.07250HepG2STAU1
BARD1ENSG00000138376.674.88470165.46130-1.143805.124503.32780HepG2SUGP2
BARD1ENSG00000138376.6157.92380227.16480-0.524502.249401.39820HepG2SUPT6H
BARD1ENSG00000138376.6100.44730337.33190-1.747708.719507.62830HepG2SUPV3L1
BARD1ENSG00000138376.6143.23740280.74380-0.970806.363905.32460HepG2TARDBP
BARD1ENSG00000138376.682.80690226.13040-1.449306.948505.49100HepG2TFIP11
BARD1ENSG00000138376.685.56360305.57240-1.8364021.4408020.29240HepG2TIAL1
BARD1ENSG00000138376.6110.45420308.31550-1.4810018.1035016.82650HepG2TRIM56
BARD1ENSG00000138376.6278.96420417.53540-0.581804.145603.05150HepG2TUFM
BARD1ENSG00000138376.6145.87040375.44280-1.363902.301801.41280HepG2U2AF2
BARD1ENSG00000138376.6301.53530441.92280-0.551502.893702.03940HepG2UBE2L3
BARD1ENSG00000138376.6104.75780199.30450-0.927903.918803.01600HepG2UCHL5
BARD1ENSG00000138376.6132.61530331.79110-1.3230015.3538013.96400HepG2UPF1
BARD1ENSG00000138376.6252.98350341.03560-0.430902.536901.52740HepG2UTP18
BARD1ENSG00000138376.6238.83810320.33140-0.423502.208201.65970HepG2UTP3
BARD1ENSG00000138376.6123.62660364.90690-1.5615023.2417022.04040HepG2ZNF622
BARD1ENSG00000138376.6408.25230582.03330-0.511603.549902.90170K562AQR
BARD1ENSG00000138376.6220.18630334.33690-0.602603.178202.24270K562BOP1
BARD1ENSG00000138376.6364.47540509.93940-0.484503.193701.80220K562CIRBP
BARD1ENSG00000138376.6356.32600553.01340-0.634102.948301.84660K562CNOT7
BARD1ENSG00000138376.6232.70430355.47260-0.611203.550402.66210K562CPSF6
BARD1ENSG00000138376.6231.61990315.80690-0.447302.735001.42390K562DDX27
BARD1ENSG00000138376.6232.48510352.71200-0.601404.026602.73830K562DDX3X
BARD1ENSG00000138376.6438.12040589.29040-0.427703.613202.88120K562DDX47
BARD1ENSG00000138376.6199.60100354.94890-0.830502.646701.63670K562EIF3D
BARD1ENSG00000138376.6221.39310306.61890-0.469802.107501.31560K562FTO
BARD1ENSG00000138376.6606.69700397.093900.611403.761902.90850K562G3BP2
BARD1ENSG00000138376.6239.49210339.37000-0.502902.665201.88450K562GPKOW
BARD1ENSG00000138376.6357.12390573.47950-0.683303.816902.93340K562GRSF1
BARD1ENSG00000138376.6229.27180378.71020-0.724003.948703.25100K562HNRNPC
BARD1ENSG00000138376.6127.23100289.82900-1.187807.248105.65230K562KRR1
BARD1ENSG00000138376.6369.77150499.01900-0.432502.940701.98540K562MATR3
BARD1ENSG00000138376.6213.92030331.27100-0.630903.707002.68350K562METAP2
BARD1ENSG00000138376.6320.25070444.90270-0.474302.808601.82280K562PCBP2
BARD1ENSG00000138376.6359.34800467.72520-0.380302.095601.38570K562PPIG
BARD1ENSG00000138376.6360.09380485.82910-0.432102.967902.28240K562PTBP1
BARD1ENSG00000138376.6360.90250465.81460-0.368102.031201.31590K562RBM22
BARD1ENSG00000138376.6196.34320309.64630-0.657203.554202.43150K562RCC2
BARD1ENSG00000138376.6217.69500322.82140-0.568402.680201.72110K562SF3B1
BARD1ENSG00000138376.6271.23040412.90440-0.606304.744503.61360K562SF3B4
BARD1ENSG00000138376.6337.89520449.83170-0.412802.342901.39020K562SRSF5
BARD1ENSG00000138376.6311.95860482.01200-0.627704.623203.70250K562TARDBP
BARD1ENSG00000138376.6352.62530464.95940-0.399002.449101.68400K562TIA1
BARD1ENSG00000138376.6500.64840397.528700.332601.996001.31430K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BARD1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of BARD1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for BARD1 is not avaliable on ENCORE database.