ACSS3

General Information

Gene Name       : ACSS3
Gene ID             : ENSG00000111058.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ACSS3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ACSS3ENSG00000111058.70.000.000.00ENCSR000AEF
HepG2ACSS3ENSG00000111058.741.9556.5349.24ENCSR985KAT
K562ACSS3ENSG00000111058.70.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ACSS3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ACSS3 RNA is bound by 31 proteins.  







eCLIP assay for ACSS3 is not avaliable on ENCORE database.





31 proteins are bound to ACSS3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr128164986681649969+3'-UTR3.807005.91795HepG2UPF1
chr128161068081610708+3'-UTR,CDS4.437467.97334HepG2BCLAF1
chr128161380381613847+3'-UTR,CDS3.320525.35431HepG2BCLAF1
chr128150333581503364+3'-UTR,CDS,intron-Proximal4.520054.45977HepG2U2AF2
chr128161070881610768+3'-UTR,CDS3.437138.84415HepG2BCLAF1
chr128150333981503408+3'-UTR,CDS5.3193612.89578HepG2BCLAF1
chr128161067681610786+3'-UTR,CDS,intron-Proximal3.5458912.52224HepG2BUD13
chr128154535181545484+5'-UTR,intron-Distal5.1800017.20280HepG2KHSRP
chr128133159781331675+5'-UTR3.8858710.50602HepG2PRPF4
chr128133159581331673+5'-UTR4.6087411.85976HepG2NKRF
chr128133159781331744+5'-UTR,intron-Proximal4.916374.42691HepG2GTF2F1
chr128154560881545662+5'-UTR,CDS,intron-Proximal3.3809132.61355HepG2U2AF2
chr128133160581331681+5'-UTR3.352563.27222HepG2CSTF2T
chr128156856681568599+CDS,intron-Proximal3.022434.49341HepG2BCLAF1
chr128153299281533017+CDS3.404325.40132HepG2BCLAF1
chr128153688581536969+CDS,intron-Proximal3.392154.32134HepG2G3BP1
chr128154582681545860+CDS3.657635.56491HepG2BCLAF1
chr128152869181528767+CDS3.5694810.93851HepG2BCLAF1
chr128147199981472068+CDS,intron-Distal3.976755.76695HepG2RBM15
chr128150344681503484+CDS,intron-Proximal3.7964617.28080HepG2BCLAF1
chr128147190581471997+CDS,intron-Distal3.543299.12797HepG2PPIG
chr128152859381528660+CDS,intron-Proximal4.3693815.80902HepG2BCLAF1
chr128147192581471988+CDS,intron-Distal4.750098.26344HepG2RPS3
chr128164864381648698+CDS3.363074.45064HepG2GRWD1
chr128153699381537030+CDS,intron-Proximal3.122995.79046HepG2PPIG
chr128153290981533022+CDS,intron-Proximal3.723228.79701HepG2G3BP1
chr128147198881472085+CDS,intron-Distal3.6154811.20378HepG2RPS3
chr128164707781647129+CDS,intron-Proximal3.005188.26020HepG2U2AF2
chr128162715881627230+CDS3.250863.72202HepG2G3BP1
chr128164709081647122+CDS4.623685.86613HepG2PPIG
chr128153688481536955+CDS,intron-Proximal3.261608.18086HepG2GRWD1
chr128152877181528821+CDS,intron-Proximal4.255575.73990HepG2PRPF8
chr128152859381528632+CDS,intron-Proximal3.277014.59907HepG2PPIG
chr128147190181471995+CDS,intron-Distal3.220273.40848HepG2DDX3X
chr128162712981627191+CDS3.4590514.72409HepG2BCLAF1
chr128150340881503446+CDS4.6997715.10546HepG2BCLAF1
chr128164733181647409+CDS3.2467611.03162HepG2BCLAF1
chr128152875481528784+CDS,intron-Proximal3.969153.61890HepG2G3BP1
chr128153291481532992+CDS3.145449.12411HepG2BCLAF1
chr128162484181624914+CDS3.1363111.00256HepG2BCLAF1
chr128154568481545734+CDS,intron-Proximal3.635576.25527HepG2PRPF8
chr128153302481533044+CDS3.261625.69345HepG2BCLAF1
chr128163159481631656+intron-Distal3.446456.55984HepG2SUGP2
chr128152090681521013+intron-Distal3.556723.78824HepG2KHSRP
chr128161968081619781+intron-Distal4.701824.40847HepG2PTBP1
chr128150353781503630+intron-Distal,intron-Proximal3.411973.78824HepG2KHSRP
chr128157698281577044+intron-Distal3.835103.18711HepG2ILF3
chr128154956881549629+intron-Distal3.636604.51091HepG2HNRNPL
chr128161202781612074+intron-Distal3.365174.40834HepG2QKI
chr128151856781518723+intron-Distal3.816754.48652HepG2PTBP1
chr128160740881607527+intron-Distal3.594054.59716HepG2HNRNPK
chr128159138881591454+intron-Distal3.873543.29248HepG2SUGP2
chr128161197481611996+intron-Distal3.918869.78089HepG2QKI
chr128155810781558228+intron-Distal3.485454.26114HepG2HNRNPL
chr128158938981589477+intron-Distal4.453843.74583HepG2PTBP1
chr128154162481541628+intron-Distal3.153664.14781HepG2CSTF2T
chr128149194381492026+intron-Distal4.095474.33846HepG2IGF2BP1
chr128159811481598219+intron-Distal5.8254511.47623HepG2PCBP2
chr128159816381598238+intron-Distal4.093259.12099HepG2PTBP1
chr128163157281631701+intron-Distal3.551886.50853HepG2MATR3
chr128154210481542135+intron-Distal4.470165.14742HepG2HNRNPL
chr128152657381526658+intron-Distal3.605704.08528HepG2SUGP2
chr128152652181526559+intron-Distal3.182383.18845HepG2HNRNPM
chr128154382781543936+intron-Distal3.772833.07706HepG2TIAL1
chr128163250881632564+intron-Distal3.540373.95921HepG2U2AF2
chr128154896881549053+intron-Distal4.139055.65979HepG2PTBP1
chr128149153681491614+intron-Distal5.8367044.21256HepG2QKI
chr128154111981541203+intron-Distal3.246437.84109HepG2HNRNPL
chr128157690881576982+intron-Distal4.601273.37208HepG2ILF3
chr128160945581609541+intron-Distal3.193633.51714HepG2QKI
chr128163948781639545+intron-Distal3.678573.66782HepG2HNRNPM
chr128160125881601344+intron-Distal5.2550317.39365HepG2QKI
chr128163871581638838+intron-Distal4.447164.80438HepG2KHSRP
chr128152013981520192+intron-Distal3.499143.95921HepG2U2AF2
chr128162123581621288+intron-Distal5.3699010.56141HepG2HNRNPL
chr128151924181519304+intron-Distal4.523065.31925HepG2QKI
chr128160777481607826+intron-Distal5.139056.76922HepG2PTBP1
chr128154221181542334+intron-Distal3.4791114.64463HepG2QKI
chr128163416181634207+intron-Distal5.2887710.13088HepG2QKI
chr128151224881512400+intron-Distal3.019573.65621HepG2HNRNPL
chr128155237281552445+intron-Distal3.977533.54208HepG2SUGP2
chr128161083481610904+intron-Distal,intron-Proximal3.474623.53952HepG2KHSRP
chr128152293881523017+intron-Distal4.328397.98209HepG2U2AF2
chr128162740181627455+intron-Distal4.019936.08725HepG2HNRNPL
chr128155168581551762+intron-Distal3.604093.40525HepG2AGGF1
chr128153598481536071+intron-Distal4.991726.93116HepG2QKI
chr128151925681519411+intron-Distal4.9974516.65444HepG2PTBP1
chr128154844981548507+intron-Distal3.361873.46325HepG2SUGP2
chr128154928781549334+intron-Distal3.905603.29248HepG2SUGP2
chr128159809781598163+intron-Distal3.634579.19663HepG2PTBP1
chr128163165681631701+intron-Distal3.365785.59399HepG2SUGP2
chr128154204081542090+intron-Distal3.089206.22956HepG2HNRNPL
chr128152107081521131+intron-Distal3.616373.16095HepG2U2AF2
chr128149196081492003+intron-Distal3.264243.78824HepG2KHSRP
chr128162798281628103+intron-Distal4.302553.48768HepG2KHSRP
chr128150439881504448+intron-Distal4.653056.10726HepG2SUGP2
chr128151159281511660+intron-Distal3.631339.99318HepG2QKI
chr128154162181541709+intron-Distal3.9503121.51723HepG2CSTF2
chr128154527181545351+intron-Distal5.2216119.17304HepG2KHSRP
chr128149161481491655+intron-Distal4.4554112.62606HepG2QKI
chr128162798381628056+intron-Distal3.045705.40388HepG2U2AF2
chr128160743881607507+intron-Distal5.195199.00303HepG2PCBP2
chr128156896681569036+intron-Distal4.416834.12401HepG2U2AF2
chr128154162881541690+intron-Distal3.430109.02495HepG2CSTF2T
chr128162000181620060+intron-Distal3.863553.16986HepG2QKI
chr128154029081540345+intron-Distal3.255743.54232HepG2HNRNPL
chr128162164381621734+intron-Distal4.207264.78196HepG2PTBP1
chr128150444881504514+intron-Distal3.599395.56133HepG2SUGP2
chr128163824381638292+intron-Distal4.000483.27829HepG2MATR3
chr128155176381551829+intron-Distal4.118969.46623HepG2HNRNPL
chr128163449481634596+intron-Distal5.1836321.23060HepG2QKI
chr128151175781511815+intron-Distal3.516613.55754HepG2U2AF2
chr128154007481540153+intron-Distal3.385595.40132HepG2BCLAF1
chr128163410381634161+intron-Distal5.4166517.43049HepG2QKI
chr128155167781551763+intron-Distal3.4972012.15284HepG2HNRNPL
chr128161974481619796+intron-Distal4.498785.30852HepG2HNRNPL
chr128163868981638785+intron-Distal4.245803.32080HepG2FUBP3
chr128159809981598236+intron-Distal3.448775.70281HepG2U2AF2
chr128151909381519147+intron-Distal4.126283.80778HepG2QKI
chr128154382681543933+intron-Distal3.5411715.68102HepG2U2AF2
chr128151943981519517+intron-Distal4.139243.62238HepG2MATR3
chr128154865181548728+intron-Distal4.386016.57428HepG2PTBP1
chr128161199981612023+intron-Distal4.7607012.54308HepG2QKI
chr128154917081549252+intron-Distal4.0387917.12076HepG2QKI
chr128163158581631672+intron-Distal4.219103.74583HepG2PTBP1
chr128154915181549263+intron-Distal3.873545.79523HepG2SUGP2
chr128152015081520198+intron-Distal4.127123.40087HepG2RBFOX2
chr128154369181543742+intron-Distal3.3718610.08484HepG2U2AF2
chr128161220181612264+intron-Distal3.190575.58362HepG2U2AF2
chr128163163581631679+intron-Distal4.301124.31871HepG2HNRNPM
chr128133170481331789+intron-Proximal3.893933.63122HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ACSS3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ACSS3 is not available on ENCORE database.

  • 80 RBPs can affect the levels of ACSS3.  








The Knockdown/knockout RNA-Seq assay for ACSS3 is not available on ENCORE database.





80 RBPs can affect the gene expression of ACSS3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ACSS3ENSG00000111058.34796.015203661.733400.389203.401402.36170HepG2ABCF1
ACSS3ENSG00000111058.33528.370703028.720500.220203.321902.66610HepG2ACO1
ACSS3ENSG00000111058.33293.577405641.53620-0.776409.831108.89530HepG2AKAP1
ACSS3ENSG00000111058.34168.099903043.037000.4538010.658309.27420HepG2AKAP8L
ACSS3ENSG00000111058.33667.779404668.01160-0.347902.841302.04760HepG2ASCC1
ACSS3ENSG00000111058.36167.155604301.219000.5198014.8832013.51500HepG2AUH
ACSS3ENSG00000111058.33606.683504434.89550-0.298202.279401.57280HepG2CIRBP
ACSS3ENSG00000111058.34558.383203028.166600.5900023.6927022.17680HepG2CKAP4
ACSS3ENSG00000111058.32189.056202661.30730-0.281803.344102.22540HepG2YBX3
ACSS3ENSG00000111058.32895.102603721.52740-0.362306.356905.45880HepG2CELF1
ACSS3ENSG00000111058.33283.738105404.40980-0.718809.943008.82290HepG2DDX3X
ACSS3ENSG00000111058.31422.242902474.56700-0.799009.192307.87690HepG2DDX55
ACSS3ENSG00000111058.32702.558704641.92310-0.780409.840208.75240HepG2DDX6
ACSS3ENSG00000111058.34367.665502897.691700.5919017.8597016.47680HepG2DKC1
ACSS3ENSG00000111058.32204.892602613.22010-0.245102.782302.07790HepG2DNAJC21
ACSS3ENSG00000111058.32067.718502590.12170-0.325006.418505.48420HepG2DNAJC2
ACSS3ENSG00000111058.33284.986802378.462400.465803.441002.19670HepG2AGO1
ACSS3ENSG00000111058.31081.425104462.96570-2.0451049.8121047.57710HepG2EIF2S1
ACSS3ENSG00000111058.31581.149602262.32810-0.516804.712003.55670HepG2EIF3D
ACSS3ENSG00000111058.33399.460104932.37850-0.537005.043604.18420HepG2EIF4A3
ACSS3ENSG00000111058.36346.071404801.834300.402202.589801.92250HepG2EIF4B
ACSS3ENSG00000111058.34044.285603172.212800.350303.513102.28810HepG2ESF1
ACSS3ENSG00000111058.35722.695104938.476600.212503.080302.45150HepG2ETF1
ACSS3ENSG00000111058.32743.369703697.54360-0.430603.576102.70860HepG2FIP1L1
ACSS3ENSG00000111058.32110.213903239.15920-0.618204.882503.42520HepG2FUS
ACSS3ENSG00000111058.33532.010604975.72540-0.494405.265704.33150HepG2FXR1
ACSS3ENSG00000111058.36005.102402971.235901.0150018.0938016.60520HepG2GPKOW
ACSS3ENSG00000111058.31968.163002638.25520-0.422705.003404.16820HepG2HNRNPA1
ACSS3ENSG00000111058.33141.717704673.24690-0.572907.926606.79150HepG2HNRNPK
ACSS3ENSG00000111058.32368.121603645.38170-0.6223021.7700020.05640HepG2HNRNPL
ACSS3ENSG00000111058.35747.760902835.507101.0193021.6406020.14020HepG2HNRNPLL
ACSS3ENSG00000111058.33057.959404692.37810-0.617807.748106.67720HepG2IGF2BP2
ACSS3ENSG00000111058.32082.744802977.74340-0.5157016.9411015.30680HepG2ILF2
ACSS3ENSG00000111058.32343.013503708.19930-0.662405.958204.11110HepG2KRR1
ACSS3ENSG00000111058.32011.155202653.94780-0.400102.744201.61370HepG2LARP7
ACSS3ENSG00000111058.33143.373404977.45880-0.663108.498607.36280HepG2MAGOH
ACSS3ENSG00000111058.32397.219102992.86560-0.320203.122202.26570HepG2MSI2
ACSS3ENSG00000111058.32481.399605123.47060-1.0460018.9004017.33810HepG2NCBP2
ACSS3ENSG00000111058.33825.027002514.235200.605308.700207.42530HepG2NSUN2
ACSS3ENSG00000111058.31214.402102259.30660-0.895606.867605.42860HepG2PABPC1
ACSS3ENSG00000111058.33748.663702922.813400.358906.514405.38280HepG2PRPF4
ACSS3ENSG00000111058.32383.731304590.82840-0.9455042.8102041.20240HepG2PTBP1
ACSS3ENSG00000111058.33571.972904020.92740-0.170802.872802.27120HepG2PUM1
ACSS3ENSG00000111058.33712.902203084.963500.267204.686603.92540HepG2PUS1
ACSS3ENSG00000111058.35760.935204972.083200.212402.259401.68480HepG2QKI
ACSS3ENSG00000111058.33260.062103819.33950-0.228402.056001.30240HepG2RBM15
ACSS3ENSG00000111058.31885.851904127.63140-1.1301048.5093046.85460HepG2RBM22
ACSS3ENSG00000111058.31784.065102598.63040-0.542604.421503.07850HepG2RCC2
ACSS3ENSG00000111058.33823.129305109.19130-0.4183010.099909.18720HepG2NELFE
ACSS3ENSG00000111058.33266.025604758.44470-0.5430016.2650014.97400HepG2RECQL
ACSS3ENSG00000111058.31634.758402201.29430-0.429305.025304.22470HepG2RPS19
ACSS3ENSG00000111058.31716.024202209.42170-0.364602.863101.90650HepG2SERBP1
ACSS3ENSG00000111058.33618.640902806.579300.366503.620902.82300HepG2SF3B1
ACSS3ENSG00000111058.32891.651904779.73130-0.7250027.5566026.02420HepG2SF3B4
ACSS3ENSG00000111058.34461.754003631.835600.296806.566005.55910HepG2SLBP
ACSS3ENSG00000111058.32206.027503015.98270-0.451202.982601.98480HepG2SMNDC1
ACSS3ENSG00000111058.31774.273604661.97040-1.39370101.4223099.49660HepG2SRFBP1
ACSS3ENSG00000111058.33923.856604988.96940-0.346507.994407.28740HepG2SRSF1
ACSS3ENSG00000111058.31777.045603019.92490-0.765008.264706.45690HepG2SRSF3
ACSS3ENSG00000111058.33282.101003739.89100-0.188402.408001.81950HepG2SRSF5
ACSS3ENSG00000111058.32193.929602792.96210-0.348305.902104.94800HepG2SRSF7
ACSS3ENSG00000111058.32698.126104058.76200-0.5891019.3501018.13360HepG2SRSF9
ACSS3ENSG00000111058.32335.792104047.62860-0.7932032.3467031.03340HepG2SSB
ACSS3ENSG00000111058.33652.224204253.36090-0.219803.945003.22570HepG2SUCLG1
ACSS3ENSG00000111058.32579.281103743.55790-0.537404.241202.58540HepG2SUGP2
ACSS3ENSG00000111058.31893.593502497.02930-0.399104.360003.19420HepG2SUPT6H
ACSS3ENSG00000111058.31744.931902463.46520-0.497504.042603.24870HepG2SUPV3L1
ACSS3ENSG00000111058.34590.892602763.799400.7320012.8008011.41710HepG2TARDBP
ACSS3ENSG00000111058.33340.710404120.45660-0.302603.338102.42370HepG2TIA1
ACSS3ENSG00000111058.31842.395902832.65360-0.6206012.0066011.09330HepG2TIAL1
ACSS3ENSG00000111058.33283.431702857.944900.200102.511201.96850HepG2TRIM56
ACSS3ENSG00000111058.31611.974003163.18790-0.9726018.7197017.03030HepG2U2AF1
ACSS3ENSG00000111058.32153.416503681.04970-0.7735029.6931028.04520HepG2UTP3
ACSS3ENSG00000111058.32177.400302909.69690-0.418302.517501.32140HepG2XRCC5
ACSS3ENSG00000111058.33418.251602884.454600.244904.242403.43860HepG2ZC3H8
ACSS3ENSG00000111058.33719.040304193.28300-0.173102.788102.23980HepG2ZNF622
ACSS3ENSG00000111058.30.000007.91540-99999.999992.368001.67360K562NSUN2
ACSS3ENSG00000111058.30.000007.81070-99999.999992.383701.62190K562SF3A3
ACSS3ENSG00000111058.30.000008.39280-99999.999992.656301.95200K562UPF1
ACSS3ENSG00000111058.30.000007.18150-99999.999992.135501.36800K562WDR3
ACSS3ENSG00000111058.30.000007.46800-99999.999992.326401.54470K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ACSS3 is not available on ENCORE database.





7 RBPs can affect the splicing of ACSS3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEACSS3ENSG00000111058.3chr12+8154008081540131815368858153702681545622815457030.060000.002770.04738includedHepG2U2AF1
SEACSS3ENSG00000111058.3chr12+8163974181639838816271278162725081647085816471850.066000.007150.07029includedHepG2U2AF2
SEACSS3ENSG00000111058.3chr12+8164645781646583816271278162725081647085816471850.057000.000020.00778includedHepG2UCHL5
SEACSS3ENSG00000111058.3chr12+8159343881593490815931198159322381610679816107750.059000.000000.00001includedHepG2PTBP1
SEACSS3ENSG00000111058.3chr12+8164645781646583816271278162725081647085816471850.123000.000000.00000includedHepG2HNRNPL
SEACSS3ENSG00000111058.3chr12+815328788153304481528594815287838153688581537026-0.067000.000140.00613excludedHepG2SF3A3
SEACSS3ENSG00000111058.3chr12+8154008081540131815368858153702681545622815457030.056000.000460.08812includedHepG2FUS
MXEACSS3ENSG00000111058.3chr12+81532909815330448153688581537026815285948152878381545622815457030.078000.005630.078681includedHepG2U2AF1
MXEACSS3ENSG00000111058.3chr12+81532909815330448153688581537026815033388150348381545622815457030.061000.000390.009841includedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ACSS3 is not avaliable on ENCORE database.