ABI2

General Information

Gene Name       : ABI2
Gene ID             : ENSG00000138443.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ABI2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ABI2ENSG00000138443.1530.8030.2730.54ENCSR000AEF
HepG2ABI2ENSG00000138443.1548.2747.2847.78ENCSR985KAT
K562ABI2ENSG00000138443.1516.4916.3716.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ABI2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ABI2 RNA is bound by 16 proteins.  







eCLIP assay for ABI2 is not avaliable on ENCORE database.





16 proteins are bound to ABI2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2204260375204260430+3'-UTR,CDS,intron-Distal,intron-Proximal3.427586.47196HepG2BCLAF1
chr2204291959204292011+3'-UTR,CDS,intron-Proximal3.890727.89209HepG2BCLAF1
chr2204231599204231759+3'-UTR,5'-UTR,CDS,intron-Proximal3.743369.83277HepG2BCLAF1
chr2204294139204294227+3'-UTR,intron-Distal3.210164.26772K562FAM120A
chr2204296497204296546+3'-UTR,intron-Distal4.482414.49517K562CPEB4
chr2204281736204281820+3'-UTR,CDS,intron-Proximal3.201484.89002HepG2BCLAF1
chr2204231598204231736+3'-UTR,5'-UTR,CDS,intron-Proximal3.345795.95282K562YBX3
chr2204260469204260545+3'-UTR,CDS,intron-Distal,intron-Proximal4.230263.71591HepG2PRPF8
chr2204245066204245110+3'-UTR,CDS,intron-Distal,intron-Proximal3.582408.16183HepG2BCLAF1
chr2204294764204294818+3'-UTR,intron-Distal4.392944.07810K562UPF1
chr2204259496204259572+3'-UTR,CDS,intron-Distal,intron-Proximal3.173684.77136HepG2PPIG
chr2204193009204193112+5'-UTR4.216464.82666HepG2DDX3X
chr2204193343204193413+5'-UTR,CDS,intron-Proximal4.257133.56873HepG2PRPF8
chr2204246868204246923+5'-UTR,CDS,intron-Distal,intron-Proximal3.841705.76944HepG2U2AF2
chr2204193181204193240+5'-UTR,CDS4.052763.45994HepG2NCBP2
chr2204261552204261602+CDS,intron-Distal,intron-Proximal4.571644.97123HepG2PCBP2
chr2204261587204261632+CDS,intron-Distal,intron-Proximal3.904883.23561HepG2U2AF1
chr2204261497204261552+CDS,intron-Distal,intron-Proximal3.322735.44142HepG2PCBP2
chr2204261561204261645+CDS,intron-Distal,intron-Proximal3.601535.55825HepG2U2AF2
chr2204261415204261541+CDS,intron-Distal,intron-Proximal3.963218.94372HepG2QKI
chr2204250588204250650+intron-Distal4.330323.55787K562PTBP1
chr2204265940204266031+intron-Distal5.6968824.28881HepG2PTBP1
chr2204193465204193536+intron-Distal3.995405.51372HepG2EFTUD2
chr2204265932204266146+intron-Distal3.635608.06806HepG2PCBP2
chr2204228162204228271+intron-Distal6.2467316.65653HepG2PCBP2
chr2204274444204274584+intron-Distal4.643826.05753HepG2SUGP2
chr2204265959204266035+intron-Distal4.317084.69074K562PTBP1
chr2204246821204246868+intron-Distal,intron-Proximal5.291627.27507HepG2U2AF2
chr2204245178204245251+intron-Distal,intron-Proximal5.066615.51162HepG2U2AF2
chr2204205897204206066+intron-Distal3.124884.70908HepG2QKI
chr2204205647204205717+intron-Distal4.007303.53723HepG2PTBP1
chr2204250570204250686+intron-Distal4.5594412.97146HepG2PTBP1
chr2204266035204266151+intron-Distal4.833595.81225K562PTBP1
chr2204266031204266116+intron-Distal4.944539.54872HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ABI2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ABI2 is not available on ENCORE database.

  • 108 RBPs can affect the levels of ABI2.  








The Knockdown/knockout RNA-Seq assay for ABI2 is not available on ENCORE database.





108 RBPs can affect the gene expression of ABI2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ABI2ENSG00000138443.112303.043501523.669100.595908.196906.46670HepG2AATF
ABI2ENSG00000138443.111719.413202254.32110-0.390802.761101.81910HepG2ABCF1
ABI2ENSG00000138443.112081.309301653.273300.332105.434904.63890HepG2ACO1
ABI2ENSG00000138443.111487.989001849.00920-0.313402.291101.38200HepG2ADAR
ABI2ENSG00000138443.111307.821501660.98930-0.344904.654403.67940HepG2AKAP8L
ABI2ENSG00000138443.113297.201102568.507800.360206.468105.48760HepG2AUH
ABI2ENSG00000138443.111086.827501547.79500-0.510103.844402.73850HepG2BCCIP
ABI2ENSG00000138443.111609.513501960.27700-0.284402.687901.92790HepG2CALR
ABI2ENSG00000138443.111454.924402137.31330-0.554905.872604.77550HepG2CIRBP
ABI2ENSG00000138443.111256.661601652.85200-0.395407.102406.12800HepG2CKAP4
ABI2ENSG00000138443.111614.669701896.11710-0.231802.250401.33430HepG2YBX3
ABI2ENSG00000138443.111961.099402445.53800-0.318504.515903.72980HepG2CELF1
ABI2ENSG00000138443.112227.369502629.68050-0.239503.924803.06590HepG2DAZAP1
ABI2ENSG00000138443.111143.727801680.97920-0.555606.717105.70890HepG2DDX21
ABI2ENSG00000138443.112063.071002604.53060-0.336202.394301.80760HepG2DDX3X
ABI2ENSG00000138443.111148.689001521.80540-0.405802.681101.91740HepG2DDX55
ABI2ENSG00000138443.112427.256301626.394900.577503.069102.04020HepG2DDX59
ABI2ENSG00000138443.111366.781601975.44400-0.531405.731204.32960HepG2DDX5
ABI2ENSG00000138443.112846.760102237.146800.347602.321901.75180HepG2DDX6
ABI2ENSG00000138443.111003.142701581.71850-0.6570013.7993012.52370HepG2DKC1
ABI2ENSG00000138443.111500.573901861.89360-0.311303.684002.87950HepG2DNAJC21
ABI2ENSG00000138443.111629.004401845.38180-0.179902.062001.48320HepG2DNAJC2
ABI2ENSG00000138443.111105.765401895.66210-0.7777010.428008.78770HepG2EEF2
ABI2ENSG00000138443.111092.937501580.36770-0.532005.231103.70150HepG2EFTUD2
ABI2ENSG00000138443.111005.045902150.82090-1.0976018.7638017.31930HepG2EIF2S1
ABI2ENSG00000138443.111359.345202377.00540-0.806209.464808.29180HepG2EIF4A3
ABI2ENSG00000138443.111846.518102485.12790-0.428504.339903.33440HepG2EIF4G2
ABI2ENSG00000138443.112219.145302948.94630-0.410207.321106.42220HepG2ETF1
ABI2ENSG00000138443.111371.254801848.33410-0.430703.265902.15450HepG2GNB2L1
ABI2ENSG00000138443.111108.165701623.55680-0.551004.844204.01250HepG2GPKOW
ABI2ENSG00000138443.112136.078201578.365100.436408.139706.57540HepG2HDGF
ABI2ENSG00000138443.111237.817501879.73030-0.602708.263407.23250HepG2HNRNPA1
ABI2ENSG00000138443.111604.363302252.31270-0.489405.204904.27030HepG2HNRNPK
ABI2ENSG00000138443.112111.097102395.47610-0.182302.445701.80790HepG2HNRNPL
ABI2ENSG00000138443.111078.481401549.38860-0.522704.949504.13260HepG2HNRNPLL
ABI2ENSG00000138443.111158.132501570.69610-0.439604.655703.45570HepG2HNRNPM
ABI2ENSG00000138443.111498.074502261.37010-0.594106.523705.52700HepG2IGF2BP2
ABI2ENSG00000138443.111784.960602121.59830-0.249303.730002.89120HepG2ILF2
ABI2ENSG00000138443.111490.676901901.40910-0.351102.781801.56470HepG2LIN28B
ABI2ENSG00000138443.111329.368302398.84580-0.8516012.0301010.69730HepG2MAGOH
ABI2ENSG00000138443.111709.820502469.18070-0.530205.015904.17360HepG2NCBP2
ABI2ENSG00000138443.111996.314302607.57900-0.385405.419704.35960HepG2NOL12
ABI2ENSG00000138443.11778.175801397.42050-0.844605.590404.00500HepG2NONO
ABI2ENSG00000138443.111633.708502199.14190-0.428803.502802.69630HepG2PABPC4
ABI2ENSG00000138443.111424.504902055.91110-0.5293010.840409.34700HepG2PARN
ABI2ENSG00000138443.111806.130202235.26330-0.307504.488703.74740HepG2PCBP1
ABI2ENSG00000138443.111157.724601737.62050-0.585804.546602.42350HepG2PHF6
ABI2ENSG00000138443.111332.887901852.52870-0.474907.511606.34070HepG2PPIL4
ABI2ENSG00000138443.11832.539401173.94490-0.495803.894302.95510HepG2PRPF8
ABI2ENSG00000138443.111751.583502489.12710-0.507006.757605.88050HepG2PUF60
ABI2ENSG00000138443.112394.294502642.27700-0.142201.830701.32670HepG2PUM1
ABI2ENSG00000138443.112255.952402640.37270-0.227002.122901.53170HepG2PUM2
ABI2ENSG00000138443.111245.674001683.95700-0.434907.828406.87990HepG2PUS1
ABI2ENSG00000138443.113342.362602463.313900.440207.129006.19430HepG2QKI
ABI2ENSG00000138443.111349.048002034.10930-0.592503.206502.45120HepG2RAVER1
ABI2ENSG00000138443.112095.432502464.78260-0.234202.442701.94750HepG2RBM22
ABI2ENSG00000138443.112756.175102235.605500.301902.914902.22510HepG2RBM25
ABI2ENSG00000138443.111428.888402183.31480-0.611606.896505.32390HepG2RBM27
ABI2ENSG00000138443.111291.096201772.94500-0.457603.504502.31080HepG2RCC2
ABI2ENSG00000138443.111250.796801845.84950-0.561405.738702.87770HepG2RPL23A
ABI2ENSG00000138443.111264.343801715.75770-0.440504.659603.80450HepG2RPLP0
ABI2ENSG00000138443.11878.834801497.37970-0.7688012.3164011.13150HepG2RPS19
ABI2ENSG00000138443.111146.399602013.64890-0.8127011.8153010.25930HepG2RPS2
ABI2ENSG00000138443.111679.943002489.02260-0.567204.342903.34000HepG2RPS3A
ABI2ENSG00000138443.111142.168602055.44030-0.8477012.6112010.34650HepG2RPS5
ABI2ENSG00000138443.111136.963201849.68070-0.7021019.6794018.18300HepG2SAFB2
ABI2ENSG00000138443.111047.388101502.89090-0.520904.823603.59650HepG2SERBP1
ABI2ENSG00000138443.111933.000102368.02010-0.292804.119203.42100HepG2SF3B4
ABI2ENSG00000138443.112128.489702386.60010-0.165102.006101.39120HepG2SLBP
ABI2ENSG00000138443.111473.632602157.06360-0.5497015.7688014.42620HepG2SMN1
ABI2ENSG00000138443.111407.543102073.64920-0.559004.107602.92180HepG2SMNDC1
ABI2ENSG00000138443.112805.762001706.394000.717305.675904.54770HepG2SNRNP70
ABI2ENSG00000138443.113139.014502783.897600.173102.152301.69310HepG2SRFBP1
ABI2ENSG00000138443.112127.235302471.69110-0.216502.737902.26660HepG2SRSF1
ABI2ENSG00000138443.112175.683602457.60100-0.175801.888301.35770HepG2SRSF5
ABI2ENSG00000138443.112680.322802010.844400.414508.652507.77230HepG2SRSF9
ABI2ENSG00000138443.111642.489002417.11080-0.5574013.5708012.60770HepG2SSB
ABI2ENSG00000138443.11746.238401514.93230-1.0215013.5416012.23210HepG2SUPV3L1
ABI2ENSG00000138443.113252.305602221.626600.5497011.6138010.58810HepG2TAF15
ABI2ENSG00000138443.11750.633201015.40520-0.435902.679001.69480HepG2TFIP11
ABI2ENSG00000138443.112484.044902041.399500.283002.705201.87730HepG2TIA1
ABI2ENSG00000138443.111164.978702018.28880-0.7928016.7709015.72730HepG2TIAL1
ABI2ENSG00000138443.111158.348302036.23630-0.8138024.4466022.97610HepG2TRIM56
ABI2ENSG00000138443.111264.517101947.37370-0.622907.256506.24590HepG2U2AF1
ABI2ENSG00000138443.11689.51520894.91620-0.376202.391001.68490HepG2UCHL5
ABI2ENSG00000138443.111061.727301491.28480-0.490104.150703.27040HepG2XRN2
ABI2ENSG00000138443.111888.295101650.013300.194502.106001.50780HepG2ZC3H8
ABI2ENSG00000138443.111388.402602178.98000-0.6502021.1820020.01740HepG2ZNF622
ABI2ENSG00000138443.11684.654901307.69390-0.9336010.209409.19100K562AQR
ABI2ENSG00000138443.11525.58530661.75430-0.332402.614901.33130K562DDX27
ABI2ENSG00000138443.111018.675601464.70140-0.523909.079707.98220K562DDX47
ABI2ENSG00000138443.111433.358601746.45480-0.285003.118702.18090K562DKC1
ABI2ENSG00000138443.11448.11160686.22110-0.614805.273103.98880K562EFTUD2
ABI2ENSG00000138443.11488.18470734.62570-0.589604.189602.88400K562EIF3D
ABI2ENSG00000138443.11479.68670748.48600-0.641907.951206.60820K562EIF3G
ABI2ENSG00000138443.11535.71080991.97540-0.8889012.7253010.91960K562EIF4A3
ABI2ENSG00000138443.111012.10800661.689400.613007.636305.29080K562FUS
ABI2ENSG00000138443.11448.435201031.61000-1.2019028.6253026.81100K562FXR1
ABI2ENSG00000138443.111366.946901030.728800.407202.085601.48320K562G3BP2
ABI2ENSG00000138443.11677.014401080.91480-0.675008.316306.99360K562GRSF1
ABI2ENSG00000138443.11649.52790831.50660-0.356302.519001.94650K562HNRNPC
ABI2ENSG00000138443.11702.736801105.26280-0.653306.518204.55560K562HNRNPK
ABI2ENSG00000138443.11552.91490745.95720-0.432002.580701.68520K562HNRNPM
ABI2ENSG00000138443.111461.337701106.569700.401102.651301.65370K562IGF2BP2
ABI2ENSG00000138443.11708.609301163.01630-0.714809.937908.27960K562MAGOH
ABI2ENSG00000138443.111817.681601352.424700.426502.680201.81360K562NAA15
ABI2ENSG00000138443.11503.73150676.41850-0.425302.653001.39870K562NONO
ABI2ENSG00000138443.11684.591601119.61430-0.709703.387302.25860K562PABPN1
ABI2ENSG00000138443.11563.60840767.32310-0.445103.661402.73370K562POLR2G
ABI2ENSG00000138443.11318.93290667.77490-1.0661012.3383010.74470K562PRPF8
ABI2ENSG00000138443.11822.638001129.93910-0.457904.821603.96730K562PTBP1
ABI2ENSG00000138443.111191.577201900.77980-0.673709.800208.24030K562PUF60
ABI2ENSG00000138443.11685.816001083.50670-0.659807.664406.17660K562RBM22
ABI2ENSG00000138443.111289.18110977.469100.399203.698902.13080K562RBM25
ABI2ENSG00000138443.11478.85610680.12470-0.506203.092602.22790K562RPS19
ABI2ENSG00000138443.11625.303701053.54990-0.752607.686905.90370K562RPS3
ABI2ENSG00000138443.11496.99680683.68250-0.460103.398502.19490K562SAFB
ABI2ENSG00000138443.111460.543501075.234200.441806.148204.97150K562SF3A3
ABI2ENSG00000138443.11799.495601071.60440-0.422604.406703.31680K562SF3B4
ABI2ENSG00000138443.11423.05660646.40880-0.611604.450603.13710K562SUPV3L1
ABI2ENSG00000138443.11489.28710769.63580-0.653507.376806.02040K562SYNCRIP
ABI2ENSG00000138443.11559.97680761.86390-0.444203.190502.15860K562TRIM56
ABI2ENSG00000138443.11830.518201028.09850-0.307903.403702.47440K562WDR43
ABI2ENSG00000138443.111918.016701549.842800.307402.807001.50350K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ABI2 is not available on ENCORE database.





23 RBPs can affect the splicing of ABI2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEABI2ENSG00000138443.11chr2+2042760072042760942042672982042674572042816302042818040.338000.000000.00010includedK562SRSF1
SEABI2ENSG00000138443.11chr2+204276007204276094204267298204267457204281630204281804-0.246000.004320.06608excludedK562SF3B4
SEABI2ENSG00000138443.11chr2+204260378204260503204259422204259569204267298204267457-0.060000.002330.04132excludedHepG2U2AF1
SEABI2ENSG00000138443.11chr2+204276007204276094204267298204267457204281630204281804-0.315000.000000.00016excludedHepG2PRPF8
SEABI2ENSG00000138443.11chr2+204259422204259569204255768204255866204260378204260503-0.173000.000000.00000excludedHepG2DDX59
SEABI2ENSG00000138443.11chr2+204260378204260503204259422204259569204267298204267457-0.095000.000000.00041excludedHepG2TBRG4
SEABI2ENSG00000138443.11chr2+204259422204259569204255768204255866204260378204260503-0.132000.000120.00224excludedHepG2U2AF2
SEABI2ENSG00000138443.11chr2+204276007204276094204267298204267457204281630204281804-0.183000.000070.00796excludedHepG2AKAP1
SEABI2ENSG00000138443.11chr2+204276007204276094204267298204267457204281630204281804-0.175000.003390.04612excludedK562PUS1
SEABI2ENSG00000138443.11chr2+204276007204276094204267298204267457204281630204281804-0.218000.000500.07650excludedK562NSUN2
SEABI2ENSG00000138443.11chr2+2042407792042408552042315992042317672042449302042451070.111000.000000.00001includedHepG2SFPQ
SEABI2ENSG00000138443.11chr2+2042615072042616902042603782042605032042672982042674000.131000.000000.00000includedHepG2PTBP1
SEABI2ENSG00000138443.11chr2+204276007204276094204267298204267457204281630204281804-0.199000.000020.00264excludedHepG2HNRNPL
SEABI2ENSG00000138443.11chr2+204260378204260503204259422204259569204267298204267457-0.065000.000160.09419excludedHepG2PPIG
SEABI2ENSG00000138443.11chr2+2042407792042408552042315992042317672042449302042451070.089000.000760.02040includedHepG2SRSF1
SEABI2ENSG00000138443.11chr2+204276007204276094204267298204267457204281630204281804-0.167000.000450.01608excludedHepG2SF3A3
SEABI2ENSG00000138443.11chr2+2042407792042408552042315992042317672042449302042450000.122000.000010.00206includedHepG2SSB
SEABI2ENSG00000138443.11chr2+204276007204276094204267298204267457204281630204281804-0.213000.000660.01996excludedK562AGGF1
SEABI2ENSG00000138443.11chr2+204247969204248044204244930204245107204255768204255866-0.052000.000190.02804excludedK562CPSF6
SEABI2ENSG00000138443.11chr2+2042479692042480442042449302042451072042557682042558660.067000.002580.04157includedK562HNRNPC
A3SSABI2ENSG00000138443.11chr2+2042918532042919922042918992042919922042816142042818040.058000.002230.01420longerK562AQR
A3SSABI2ENSG00000138443.11chr2+204260378204260503204260381204260503204259422204259569-0.129000.000970.09368shorterK562RBM15
MXEABI2ENSG00000138443.11chr2+2042315992042317672042449302042451072041930022041933542042557682042558660.134000.001890.036441includedHepG2FTO
MXEABI2ENSG00000138443.11chr2+2042557682042558662042594222042595692042449302042451072042603782042605030.136000.000370.007411includedHepG2SFPQ
MXEABI2ENSG00000138443.11chr2+204244930204245107204255768204255866204231599204231767204259422204259569-0.208000.000070.001942includedHepG2SFPQ
MXEABI2ENSG00000138443.11chr2+2042557682042558662042594222042595692042449302042451072042603782042605030.191000.000000.000021includedHepG2U2AF2
MXEABI2ENSG00000138443.11chr2+204276007204276094204281630204281804204267298204267457204291899204291992-0.213000.000000.000912includedHepG2PRPF8
MXEABI2ENSG00000138443.11chr2+204244930204245107204255768204255866204231599204231767204259422204259569-0.155000.005500.066942includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ABI2 is not avaliable on ENCORE database.