ZNF561

General Information

Gene Name       : ZNF561
Gene ID             : ENSG00000171469.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF561)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF561ENSG00000171469.1017.6717.3817.52ENCSR000AEF
HepG2ZNF561ENSG00000171469.1016.8722.0519.46ENCSR985KAT
K562ZNF561ENSG00000171469.1016.8517.4417.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF561 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF561 RNA is bound by 7 proteins.  







eCLIP assay for ZNF561 is not avaliable on ENCORE database.





7 proteins are bound to ZNF561 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1997188549718919-3'-UTR,intron-Distal4.7574118.98456HepG2PCBP2
chr1997188839718978-3'-UTR,intron-Distal3.441405.50064HepG2PTBP1
chr1997189199718974-3'-UTR,intron-Distal3.735378.51568HepG2PCBP2
chr1997277319727848-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.498593.27569HepG2BCLAF1
chr1997287389728800-5'-UTR,CDS,intron-Distal,intron-Proximal3.334294.78164HepG2PRPF8
chr1997286799728805-5'-UTR,CDS,intron-Distal,intron-Proximal4.721835.17615K562AQR
chr1997285959728852-5'-UTR,CDS,intron-Distal,intron-Proximal4.169867.08156K562PRPF8
chr1997318369731888-5'-UTR,intron-Distal,intron-Proximal4.612905.85636HepG2NCBP2
chr1997287649728934-5'-UTR,CDS,intron-Distal,intron-Proximal3.074994.20336HepG2AQR
chr1997279929728093-intron-Distal,intron-Proximal4.716176.81663K562KHDRBS1
chr1997252859725353-intron-Distal3.635803.97268K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF561 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF561 is not available on ENCORE database.

  • 83 RBPs can affect the levels of ZNF561.  








The Knockdown/knockout RNA-Seq assay for ZNF561 is not available on ENCORE database.





83 RBPs can affect the gene expression of ZNF561 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF561ENSG00000171469.6696.96960518.329700.427102.961001.85740HepG2AATF
ZNF561ENSG00000171469.61103.11730718.517000.618405.481604.20560HepG2ABCF1
ZNF561ENSG00000171469.6934.08260676.048900.466306.275205.43520HepG2ACO1
ZNF561ENSG00000171469.61397.33040920.226200.602505.007604.31790HepG2AKAP1
ZNF561ENSG00000171469.6847.40810679.267200.319002.896102.11220HepG2AKAP8L
ZNF561ENSG00000171469.61538.37970724.733101.0858025.1376023.27320HepG2CALR
ZNF561ENSG00000171469.61354.41430974.090400.475403.030702.00830HepG2CCAR1
ZNF561ENSG00000171469.61134.77760675.952500.7473016.8418015.49990HepG2CKAP4
ZNF561ENSG00000171469.6779.10790470.191700.728507.844806.18470HepG2CSTF2
ZNF561ENSG00000171469.6760.31510530.723700.518502.980901.55710HepG2CSTF2T
ZNF561ENSG00000171469.6779.22610625.271600.317503.118802.23750HepG2DDX19B
ZNF561ENSG00000171469.61096.79460571.840900.9395010.551209.32200HepG2DDX21
ZNF561ENSG00000171469.6823.33550559.618400.556905.489104.19700HepG2DDX24
ZNF561ENSG00000171469.61079.78740748.286800.529004.082303.16250HepG2DDX55
ZNF561ENSG00000171469.6472.68270757.08080-0.679603.423802.74470HepG2DDX6
ZNF561ENSG00000171469.6882.15830646.808700.447604.969204.11070HepG2DKC1
ZNF561ENSG00000171469.6706.00370486.766200.536303.343202.12030HepG2EFTUD2
ZNF561ENSG00000171469.61128.74480783.251600.527102.311001.67970HepG2EIF4B
ZNF561ENSG00000171469.62056.910801259.109600.7080018.0059016.69300HepG2ETF1
ZNF561ENSG00000171469.6948.62720660.665400.521803.967802.96900HepG2EWSR1
ZNF561ENSG00000171469.61008.95270725.542200.475603.212702.38960HepG2FIP1L1
ZNF561ENSG00000171469.61124.10090698.734800.685904.984203.51250HepG2FUS
ZNF561ENSG00000171469.61002.71880820.034500.290102.595101.68680HepG2HNRNPA2B1
ZNF561ENSG00000171469.6792.832301084.59020-0.452105.824904.83420HepG2HNRNPF
ZNF561ENSG00000171469.6743.37460500.627700.570305.526104.22910HepG2HNRNPM
ZNF561ENSG00000171469.61124.20470655.378100.7784016.4624015.08000HepG2HNRNPU
ZNF561ENSG00000171469.6878.322301068.01430-0.282102.122201.48180HepG2IGF2BP1
ZNF561ENSG00000171469.61008.46830765.481100.397602.485301.84150HepG2IGF2BP2
ZNF561ENSG00000171469.61159.75090718.108900.691402.357401.45660HepG2IGF2BP3
ZNF561ENSG00000171469.6795.70860669.444100.249202.284901.61090HepG2ILF2
ZNF561ENSG00000171469.61987.888801028.358500.9508011.162209.48830HepG2LARP4
ZNF561ENSG00000171469.61046.72460811.824600.366502.242001.64950HepG2MAGOH
ZNF561ENSG00000171469.6940.31260587.261600.679007.834706.53720HepG2MSI2
ZNF561ENSG00000171469.6966.78460648.691200.575608.324406.98180HepG2PARN
ZNF561ENSG00000171469.6906.75460661.447600.455002.308401.35830HepG2PCBP2
ZNF561ENSG00000171469.61120.29230577.381500.9562012.4765010.93290HepG2PRPF8
ZNF561ENSG00000171469.61101.02160896.579800.296203.373802.73290HepG2PUM1
ZNF561ENSG00000171469.6608.91630865.73430-0.507705.297104.47390HepG2QKI
ZNF561ENSG00000171469.62423.542401052.373101.2034043.1231041.54850HepG2RBM22
ZNF561ENSG00000171469.61707.951301168.331100.547706.219205.25170HepG2RPLP0
ZNF561ENSG00000171469.61102.80070461.109001.2579025.4693023.91550HepG2RPS19
ZNF561ENSG00000171469.61210.72560711.322900.767209.398207.99720HepG2RPS2
ZNF561ENSG00000171469.6739.68490571.163500.372902.149301.44870HepG2RRP9
ZNF561ENSG00000171469.6431.01950583.63330-0.437304.051703.29760HepG2SAFB2
ZNF561ENSG00000171469.61779.00350778.172301.1928014.8854013.24760HepG2SF3A3
ZNF561ENSG00000171469.61443.56860832.241900.7945017.7364016.43890HepG2SF3B4
ZNF561ENSG00000171469.6684.90920809.82090-0.241702.023401.40600HepG2SLBP
ZNF561ENSG00000171469.6933.33180680.598500.455504.132503.37380HepG2SMN1
ZNF561ENSG00000171469.61685.769701188.599900.504009.883809.09570HepG2SRFBP1
ZNF561ENSG00000171469.61339.05800868.673400.6242011.4769010.65560HepG2SRSF1
ZNF561ENSG00000171469.61354.01810833.914800.699203.989503.26230HepG2SRSF5
ZNF561ENSG00000171469.6735.323601065.56520-0.535207.850506.77640HepG2SRSF7
ZNF561ENSG00000171469.61579.976101031.956700.6144013.0366012.08560HepG2SSB
ZNF561ENSG00000171469.61248.85680948.407400.396905.635404.80570HepG2SUCLG1
ZNF561ENSG00000171469.61029.59360744.948200.466803.368702.63060HepG2SUPV3L1
ZNF561ENSG00000171469.61263.79210636.759700.9888020.4130019.28510HepG2TIAL1
ZNF561ENSG00000171469.6520.76250642.51900-0.303102.421601.88680HepG2TRIM56
ZNF561ENSG00000171469.61002.73160620.685600.691906.957905.97220HepG2U2AF1
ZNF561ENSG00000171469.61355.16120686.511900.981002.999601.96860HepG2U2AF2
ZNF561ENSG00000171469.61210.24040873.366200.470503.063902.18510HepG2UBE2L3
ZNF561ENSG00000171469.6324.91670440.09130-0.437702.140901.47350HepG2UCHL5
ZNF561ENSG00000171469.6965.74280666.285200.535407.305106.40820HepG2UTP3
ZNF561ENSG00000171469.61416.12800701.972001.0124010.315608.41260HepG2XRCC6
ZNF561ENSG00000171469.6877.89100626.659400.486306.527105.56690HepG2ZC3H8
ZNF561ENSG00000171469.6510.59030693.54010-0.441804.277603.59860K562AGGF1
ZNF561ENSG00000171469.6421.22410721.64360-0.776708.622207.40280K562AKAP8L
ZNF561ENSG00000171469.61386.552101025.583100.435003.371902.73700K562AQR
ZNF561ENSG00000171469.6451.76850708.84520-0.649906.716105.48580K562CPSF6
ZNF561ENSG00000171469.61169.72940899.011600.379704.621003.80720K562DDX47
ZNF561ENSG00000171469.6634.05470818.66280-0.368703.311502.53620K562EIF2S2
ZNF561ENSG00000171469.6713.24340535.761300.412702.391801.43770K562EIF3D
ZNF561ENSG00000171469.6650.44060412.098400.658306.066904.86110K562EIF4A3
ZNF561ENSG00000171469.6669.45690852.69650-0.349002.382801.59590K562FIP1L1
ZNF561ENSG00000171469.6741.53240428.561600.7909011.004209.88280K562FXR1
ZNF561ENSG00000171469.6710.88750434.566600.709905.129704.10000K562G3BP2
ZNF561ENSG00000171469.6882.562201090.99680-0.305902.081201.41890K562GRSF1
ZNF561ENSG00000171469.6386.43350611.14210-0.661302.496801.35610K562HNRNPA2B1
ZNF561ENSG00000171469.61184.32180680.874000.7985014.6082012.63170K562HNRNPU
ZNF561ENSG00000171469.6528.33420765.90150-0.535704.988403.81620K562KIF1C
ZNF561ENSG00000171469.6697.30180857.99510-0.299202.198101.40390K562MBNL1
ZNF561ENSG00000171469.6326.62100534.78840-0.711402.720101.74070K562PABPN1
ZNF561ENSG00000171469.6745.93900967.91980-0.375802.753601.93490K562PPIG
ZNF561ENSG00000171469.6622.02490486.887500.353301.957401.31980K562PRPF8
ZNF561ENSG00000171469.61791.674001312.919700.448404.225303.22270K562PUF60
ZNF561ENSG00000171469.6389.15460715.78930-0.879209.177208.23760K562PUS1
ZNF561ENSG00000171469.6408.35320697.33200-0.772009.813608.72410K562RBM15
ZNF561ENSG00000171469.6896.78880678.109000.403203.970003.00340K562SF3A3
ZNF561ENSG00000171469.6642.25560452.013100.506704.688603.56520K562SF3B4
ZNF561ENSG00000171469.6426.76580597.35410-0.485103.630802.82710K562SRSF1
ZNF561ENSG00000171469.6782.16810508.815200.620206.917405.60550K562SYNCRIP
ZNF561ENSG00000171469.6563.21560435.156700.372102.570301.79560K562U2AF2
ZNF561ENSG00000171469.6825.73640648.411500.348703.337602.41590K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF561 is not available on ENCORE database.





12 RBPs can affect the splicing of ZNF561 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF561ENSG00000171469.6chr19-9731591973172597301869730258973183797319100.246000.000010.01150includedK562XRN2
SEZNF561ENSG00000171469.6chr19-972829697284349727720972784797287669728855-0.216000.000440.04488excludedHepG2PRPF8
SEZNF561ENSG00000171469.6chr19-972829697284349727720972784797287669728855-0.191000.001060.02831excludedHepG2HNRNPK
SEZNF561ENSG00000171469.6chr19-972469697247799718007972201297301079730258-0.092000.012980.09981excludedK562AQR
SEZNF561ENSG00000171469.6chr19-972829697284349727720972784797287669728855-0.215000.000050.00804excludedHepG2DDX3X
SEZNF561ENSG00000171469.6chr19-972829697284349727720972784797287669728855-0.204000.000210.01816excludedHepG2NCBP2
SEZNF561ENSG00000171469.6chr19-9728296972843497277209727847972876697288550.369000.000000.00001includedK562HNRNPU
SEZNF561ENSG00000171469.6chr19-972772097278479724734972477997287669728842-0.224000.002450.08782excludedK562HNRNPK
SEZNF561ENSG00000171469.6chr19-9728296972844497277279727847972876697288550.289000.001510.05911includedHepG2HNRNPU
SEZNF561ENSG00000171469.6chr19-972829697284349727720972784797287669728855-0.236000.000040.00275excludedHepG2HNRNPC
A3SSZNF561ENSG00000171469.6chr19-9727720972790297277209727847972876697288550.375000.000010.00726longerK562HNRNPK
A5SSZNF561ENSG00000171469.6chr19-9731591973190797318379731907973010797302580.343000.000040.04633longerHepG2SUB1
MXEZNF561ENSG00000171469.6chr19-97277209727847972876697288559724696972477997301079730258-0.207000.002440.059382includedHepG2XRN2
MXEZNF561ENSG00000171469.6chr19-97277209727847972876697288559724696972477997301079730258-0.178000.000660.018832includedHepG2DDX55
MXEZNF561ENSG00000171469.6chr19-97277209727847972876697288559724696972477997301079730258-0.266000.000370.014372includedHepG2HNRNPU
MXEZNF561ENSG00000171469.6chr19-97277209727902972876697288559724696972477997301079730258-0.160000.003480.091782includedHepG2SUPV3L1
MXEZNF561ENSG00000171469.6chr19-97277209727847972876697288559724696972477997301079730258-0.199000.001520.036192includedK562FXR2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF561 is not avaliable on ENCORE database.