USP47

General Information

Gene Name       : USP47
Gene ID             : ENSG00000170242.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: USP47)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878USP47ENSG00000170242.1733.6423.4428.54ENCSR000AEF
HepG2USP47ENSG00000170242.1711.9322.7517.34ENCSR985KAT
K562USP47ENSG00000170242.1723.2823.3623.32ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for USP47 is not avaliable on ENCORE database.



Proteins bound to RNA
  • USP47 RNA is bound by 26 proteins.  







eCLIP assay for USP47 is not avaliable on ENCORE database.





26 proteins are bound to USP47 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr111194434411944432+3'-UTR,CDS3.582408.57930HepG2BCLAF1
chr111196452211964623+3'-UTR,CDS4.597849.80377HepG2BCLAF1
chr111195799511958046+3'-UTR,CDS4.930565.23259HepG2BCLAF1
chr111192484011924884+3'-UTR,CDS4.070616.22576HepG2BCLAF1
chr111194174911941800+3'-UTR,CDS,intron-Proximal5.437468.86847HepG2BCLAF1
chr111197428811974321+3'-UTR,CDS3.957785.35703HepG2BCLAF1
chr111195790811958047+3'-UTR,CDS3.128745.33987HepG2GRWD1
chr111196451011964622+3'-UTR,CDS4.450309.30180K562UCHL5
chr111195784711957970+3'-UTR,CDS,intron-Proximal3.340744.80218K562UCHL5
chr111192425311924272+3'-UTR,CDS,intron-Proximal3.615755.85504K562SF3B4
chr111196960611969626+3'-UTR,CDS4.305353.45943HepG2BCLAF1
chr111196438611964425+3'-UTR,CDS3.791075.06180HepG2BCLAF1
chr111192438311924408+3'-UTR,CDS,intron-Proximal3.698864.09885HepG2BCLAF1
chr111194426911944331+3'-UTR,CDS,intron-Proximal3.855445.97823HepG2BCLAF1
chr111192695311927095+3'-UTR,CDS3.471838.11704K562UCHL5
chr111194191711942040+3'-UTR,CDS4.2203914.09262HepG2BCLAF1
chr111197144811971512+3'-UTR,CDS3.097845.00751HepG2BCLAF1
chr111195457811954666+3'-UTR,CDS,intron-Proximal3.233824.86973K562UCHL5
chr111195785511957914+3'-UTR,CDS3.519638.20757HepG2BCLAF1
chr111194433611944437+3'-UTR,CDS4.584685.52963HepG2PPIG
chr111192427211924298+3'-UTR,CDS3.472876.46304K562SF3B4
chr111192426211924326+3'-UTR,CDS4.215079.80976HepG2BCLAF1
chr111195791411957995+3'-UTR,CDS4.607987.09561HepG2BCLAF1
chr111192432611924361+3'-UTR,CDS5.266628.40988HepG2BCLAF1
chr111196448111964603+3'-UTR,CDS3.518253.10766K562HLTF
chr111194430811944413+3'-UTR,CDS3.694257.13692K562ZNF622
chr111192694511927039+3'-UTR,CDS,intron-Proximal3.695917.65528K562ZNF622
chr111192704011927095+3'-UTR,CDS3.883473.68471HepG2BCLAF1
chr111195540311955482+3'-UTR,CDS4.7348310.80414HepG2BCLAF1
chr111194430811944429+3'-UTR,CDS3.776477.06029HepG2GRWD1
chr111196388811963974+3'-UTR,CDS3.337627.74581HepG2BCLAF1
chr111197837311978478+3'-UTR4.3905110.62286K562PUM2
chr111196401011964079+3'-UTR,CDS5.381368.40988HepG2BCLAF1
chr111196421911964285+3'-UTR,CDS3.178075.79905HepG2BCLAF1
chr111195100711951082+3'-UTR,CDS3.288665.63425HepG2BCLAF1
chr111197198111972031+3'-UTR,CDS,intron-Proximal3.820396.39464HepG2BCLAF1
chr111197874611978827+3'-UTR3.603113.77931K562UPF1
chr111192481011924826+3'-UTR,CDS3.665304.46864HepG2BCLAF1
chr111186351811863590+5'-UTR5.225386.78045K562FXR2
chr111186356611863633+5'-UTR5.178714.11950K562DDX3X
chr111186351611863648+5'-UTR5.5055011.29529K562FMR1
chr111186364211863759+5'-UTR,CDS3.554268.88978K562DDX3X
chr111190179211901860+5'-UTR,CDS,intron-Distal3.174865.29017HepG2BCLAF1
chr111190606411906126+5'-UTR,CDS3.406387.01246HepG2BCLAF1
chr111191920311919243+5'-UTR,CDS,intron-Proximal4.007555.36555HepG2BCLAF1
chr111186359011863654+5'-UTR3.900634.19414K562FXR2
chr111186364811863759+5'-UTR,CDS4.122546.50481K562FMR1
chr111197432811974408+CDS3.846563.60441HepG2GRWD1
chr111197432111974378+CDS3.345603.94979HepG2BCLAF1
chr111193159111931673+intron-Distal4.438326.03465K562SAFB2
chr111194206911942152+intron-Distal,intron-Proximal4.374423.65874K562LSM11
chr111189271711892798+intron-Distal3.407454.35402HepG2SUGP2
chr111190673211906788+intron-Distal3.589064.22563K562UCHL5
chr111187128311871373+intron-Distal3.469983.10883HepG2SUGP2
chr111193906711939146+intron-Distal3.342004.95618K562SAFB2
chr111194623811946287+intron-Distal3.389794.02190K562EXOSC5
chr111186746811867523+intron-Distal3.889756.25619HepG2SUGP2
chr111195145511951563+intron-Distal,intron-Proximal4.345625.68841K562KHSRP
chr111194217211942265+intron-Distal5.1313010.38845K562KHSRP
chr111192906211929160+intron-Distal4.463885.91894K562TIA1
chr111193344911933508+intron-Distal4.161363.74251K562SAFB2
chr111189043411890527+intron-Distal3.021323.28806K562KHSRP
chr111193300211933119+intron-Distal5.2058811.17622K562SAFB2
chr111186807711868104+intron-Distal4.118184.28663HepG2SUGP2
chr111187186311871929+intron-Distal5.2014214.54239K562PTBP1
chr111186547511865559+intron-Distal4.928286.19339K562PTBP1
chr111187174511871796+intron-Distal4.609563.91475K562PTBP1
chr111189175011891806+intron-Distal3.723513.24603K562KHSRP
chr111192401311924079+intron-Distal3.834715.14864K562KHSRP
chr111193175111931793+intron-Distal3.663273.19638K562SAFB2
chr111187426511874320+intron-Distal4.299465.04879HepG2SUGP2
chr111190195511901977+intron-Distal,intron-Proximal3.950017.64049K562KHSRP
chr111193293311933002+intron-Distal4.220274.30215K562SAFB2
chr111190278111902874+intron-Distal3.809023.39864HepG2SUGP2
chr111194405211944100+intron-Distal3.296946.85960K562KHSRP
chr111192462411924695+intron-Distal3.494095.98045K562KHSRP
chr111191423311914319+intron-Distal3.538134.73419HepG2ILF3
chr111186544711865559+intron-Distal4.757985.32928K562MATR3
chr111186780511867847+intron-Distal4.201153.79098HepG2SUGP2
chr111186548611865582+intron-Distal4.4363010.31671HepG2SUGP2
chr111193359211933640+intron-Distal3.184953.75707K562SAFB2
chr111191423711914317+intron-Distal3.355114.52160K562ILF3
chr111194777511947825+intron-Distal4.053573.01456K562EXOSC5
chr111190674811906852+intron-Distal3.634484.34612K562SAFB2
chr111194311011943158+intron-Distal3.666843.02234K562KHSRP
chr111190196411902036+intron-Distal,intron-Proximal4.281203.31283K562PRPF8
chr111188635511886415+intron-Distal3.820743.33944K562MATR3
chr111194235811942439+intron-Distal3.411973.78824HepG2KHSRP
chr111189182111891889+intron-Distal3.287884.08064K562KHSRP
chr111186636011866392+intron-Distal3.985843.79098HepG2SUGP2
chr111194207611942168+intron-Distal,intron-Proximal3.805265.95946K562KHSRP
chr111194410011944145+intron-Distal3.588784.70224K562KHSRP
chr111194706811947123+intron-Distal4.053573.01456K562EXOSC5
chr111194819411948265+intron-Distal4.685564.40618K562PTBP1
chr111191867311918784+intron-Distal3.199985.34873K562KHSRP
chr111187408711874160+intron-Distal4.153053.79098HepG2SUGP2
chr111190197711902047+intron-Distal,intron-Proximal4.117409.74134K562KHSRP
chr111193844111938505+intron-Distal3.339383.86112K562SAFB2
chr111187220311872255+intron-Distal4.207254.53347HepG2SUGP2
chr111192569311925758+intron-Distal3.114093.07751K562KHSRP
chr111187175611871825+intron-Distal3.999803.23532K562MATR3
chr111195966811959762+intron-Distal,intron-Proximal3.021323.28806K562KHSRP
chr111194599511946041+intron-Distal4.014993.30696K562EXOSC5
chr111186590311865962+intron-Distal4.664736.05753HepG2SUGP2
chr111192644011926635+intron-Distal3.739368.44734K562KHSRP
chr111189931411899441+intron-Distal4.509486.26655K562EIF4G2
chr111188968411889870+intron-Distal3.248833.84589K562HNRNPL
chr111188680311886873+intron-Distal3.299464.33009HepG2SUGP2
chr111194819911948270+intron-Distal4.349554.40847HepG2PTBP1
chr111186739311867468+intron-Distal4.012976.26907HepG2SUGP2
chr111186719311867250+intron-Distal3.865786.23177HepG2SUGP2
chr111193822211938290+intron-Distal3.290954.15505K562SAFB2
chr111186545411865552+intron-Distal4.154125.61842HepG2MATR3
chr111187185711871930+intron-Distal4.453843.41738HepG2PTBP1
chr111187207311872137+intron-Distal4.071993.23532K562MATR3
chr111193408611934136+intron-Distal3.831473.10466K562SAFB2
chr111193250311932543+intron-Distal3.884063.74251K562SAFB2
chr111186558211865623+intron-Distal3.977533.54208HepG2SUGP2
chr111189011811890218+intron-Distal3.608796.01927K562KHSRP
chr111187157811871621+intron-Distal3.931733.24322HepG2MATR3
chr111193687611937006+intron-Distal3.957668.28241K562SAFB2
chr111187185911871910+intron-Distal4.113233.47525K562MATR3
chr111192469511924748+intron-Distal,intron-Proximal3.784946.19377K562KHSRP
chr111186390511863989+intron-Distal3.986393.19125K562GTF2F1
chr111186602311866135+intron-Distal4.163448.56181HepG2SUGP2
chr111189916111899266+intron-Distal4.128813.83958HepG2QKI
chr111190615611906206+intron-Proximal3.127143.18246K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for USP47 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for USP47 is not available on ENCORE database.

  • 85 RBPs can affect the levels of USP47.  








The Knockdown/knockout RNA-Seq assay for USP47 is not available on ENCORE database.





85 RBPs can affect the gene expression of USP47 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
USP47ENSG00000170242.131415.957701238.414900.193201.854701.33900HepG2ACO1
USP47ENSG00000170242.131342.004101916.79440-0.514304.066603.43920HepG2AKAP1
USP47ENSG00000170242.131940.517501562.236400.312702.529701.95430HepG2BOP1
USP47ENSG00000170242.131677.975501352.309800.311202.689901.92930HepG2CALR
USP47ENSG00000170242.131410.680001238.147700.188101.875801.31380HepG2CKAP4
USP47ENSG00000170242.131363.756001029.580600.405404.003102.89150HepG2DDX24
USP47ENSG00000170242.131289.14270971.821600.407502.915101.59400HepG2DDX27
USP47ENSG00000170242.131984.947701577.321600.331502.010501.47660HepG2DDX6
USP47ENSG00000170242.131100.47280875.482900.329902.442901.52050HepG2DHX30
USP47ENSG00000170242.131479.223001184.828000.320103.861503.08690HepG2DKC1
USP47ENSG00000170242.131259.08440993.586400.341602.963501.85010HepG2EIF3G
USP47ENSG00000170242.132188.941001472.698800.5717012.0959010.59000HepG2EIF4G1
USP47ENSG00000170242.131729.236701410.773400.293502.011301.30990HepG2EIF4G2
USP47ENSG00000170242.131566.808001236.658700.341302.699601.62090HepG2ESF1
USP47ENSG00000170242.132536.083002165.407300.227903.024202.39980HepG2ETF1
USP47ENSG00000170242.132020.150801441.487000.486803.683402.80390HepG2FIP1L1
USP47ENSG00000170242.131225.962701000.516000.293102.119101.42350HepG2FUBP3
USP47ENSG00000170242.131041.598101690.71240-0.698808.182607.04000HepG2FXR1
USP47ENSG00000170242.131178.842701359.94740-0.206202.363201.73400HepG2HNRNPL
USP47ENSG00000170242.131264.436201551.51440-0.295201.906401.37530HepG2HNRNPLL
USP47ENSG00000170242.131786.354901375.722700.376703.163202.36400HepG2NSUN2
USP47ENSG00000170242.132363.169301480.007600.675004.215203.10320HepG2PABPC1
USP47ENSG00000170242.132076.090601550.252400.421303.376202.58380HepG2PABPC4
USP47ENSG00000170242.131358.633901619.02950-0.253002.016201.48520HepG2PCBP1
USP47ENSG00000170242.131816.415401177.281500.625504.355603.07210HepG2PCBP2
USP47ENSG00000170242.131356.484901033.227500.392605.285404.25090HepG2PRPF4
USP47ENSG00000170242.131148.81900801.457700.519404.970203.92240HepG2PRPF8
USP47ENSG00000170242.132138.971201498.921100.512907.425206.34730HepG2PUM2
USP47ENSG00000170242.131475.264101261.406200.225802.420801.83430HepG2PUS1
USP47ENSG00000170242.132449.951401784.148100.457407.109606.17590HepG2QKI
USP47ENSG00000170242.131787.728001136.327700.653603.803002.98090HepG2RAVER1
USP47ENSG00000170242.132179.716001619.268800.428705.128504.23660HepG2RBM25
USP47ENSG00000170242.131730.115701219.584200.504405.351804.44390HepG2RPLP0
USP47ENSG00000170242.131537.756401115.811800.462602.506301.60540HepG2RPS10
USP47ENSG00000170242.131072.17120792.844800.435303.379502.52200HepG2RRP9
USP47ENSG00000170242.131001.73350792.970600.337102.267601.41310HepG2SERBP1
USP47ENSG00000170242.132589.795401607.332900.688105.835804.83220HepG2SF3A3
USP47ENSG00000170242.132790.089301535.686100.8613015.5942014.06100HepG2SF3B1
USP47ENSG00000170242.133853.394102044.230500.9145044.0413042.67080HepG2SRFBP1
USP47ENSG00000170242.132359.781101790.274000.398407.512506.82230HepG2SRSF1
USP47ENSG00000170242.132153.360801652.422600.381902.319701.41350HepG2SRSF3
USP47ENSG00000170242.132113.769301456.514400.5372012.6341011.60590HepG2SRSF9
USP47ENSG00000170242.132538.060401774.916500.5159012.5095011.57420HepG2SSB
USP47ENSG00000170242.131474.093101061.864500.473102.644601.47160HepG2SUB1
USP47ENSG00000170242.131869.613101586.710000.236602.750002.12980HepG2SUCLG1
USP47ENSG00000170242.131210.30290973.419000.314102.506401.60850HepG2SUPT6H
USP47ENSG00000170242.131543.684201033.869000.578205.880904.95220HepG2SUPV3L1
USP47ENSG00000170242.131997.975101609.268300.312003.709403.07650HepG2TAF15
USP47ENSG00000170242.131845.489401478.592000.319703.219002.32180HepG2TIA1
USP47ENSG00000170242.131953.873701233.136900.663908.175107.09630HepG2U2AF1
USP47ENSG00000170242.131065.380801376.22570-0.369304.837204.08150HepG2UTP3
USP47ENSG00000170242.131517.074401019.650000.5731012.5739011.31290HepG2ZC3H8
USP47ENSG00000170242.132288.505301567.732300.5456015.8665014.82690HepG2ZNF622
USP47ENSG00000170242.131727.739501267.172700.447204.734203.14140K562AARS
USP47ENSG00000170242.131892.018703002.27830-0.6661019.2656017.88420K562AGGF1
USP47ENSG00000170242.131240.225401621.63820-0.386805.224603.08950K562AKAP1
USP47ENSG00000170242.132423.614603124.00520-0.366203.646602.89370K562AKAP8L
USP47ENSG00000170242.134261.098603332.414500.354603.477902.83550K562AQR
USP47ENSG00000170242.134397.461303256.215200.433409.848808.70910K562DDX47
USP47ENSG00000170242.131376.732701665.88790-0.275002.766301.46150K562DDX6
USP47ENSG00000170242.132144.686101551.883200.466603.401301.97810K562EEF2
USP47ENSG00000170242.131883.740301499.513000.329002.654201.76270K562EFTUD2
USP47ENSG00000170242.132597.593601605.674600.693905.404403.89360K562EIF3D
USP47ENSG00000170242.131833.233602538.63610-0.469704.637403.51890K562FIP1L1
USP47ENSG00000170242.132012.724901624.937300.308703.171001.72440K562FUS
USP47ENSG00000170242.132538.669701848.323600.457803.149302.38660K562G3BP2
USP47ENSG00000170242.132140.644103237.18600-0.596709.325607.91480K562GRSF1
USP47ENSG00000170242.13825.098701205.18230-0.546605.726002.92300K562GRWD1
USP47ENSG00000170242.131787.539802168.23540-0.278503.083602.14330K562HNRNPU
USP47ENSG00000170242.131080.006201406.29910-0.380902.750101.30370K562LIN28B
USP47ENSG00000170242.131569.839301981.37010-0.335903.087202.16010K562METAP2
USP47ENSG00000170242.131805.512902195.34560-0.282003.890902.94600K562MTPAP
USP47ENSG00000170242.132122.407902439.20950-0.200703.043702.26480K562NSUN2
USP47ENSG00000170242.131656.685802820.71030-0.767804.050202.79410K562PABPN1
USP47ENSG00000170242.131772.105901422.172900.317302.613801.83880K562POLR2G
USP47ENSG00000170242.132033.099402881.66680-0.503205.028403.86740K562PPIG
USP47ENSG00000170242.132046.123803354.63920-0.713303.152601.55780K562PPP1R8
USP47ENSG00000170242.132605.705001459.195000.8364013.8711012.18040K562PRPF8
USP47ENSG00000170242.13909.502301243.48330-0.451202.275101.46300K562PSIP1
USP47ENSG00000170242.132897.636602471.539200.229401.974201.39620K562PTBP1
USP47ENSG00000170242.132524.439503018.68780-0.258002.803302.20710K562RBM15
USP47ENSG00000170242.131960.663101486.463400.399403.073902.21190K562RPS19
USP47ENSG00000170242.131633.558401275.775100.356502.693501.70410K562RPS3
USP47ENSG00000170242.131709.647001310.040200.384003.389801.76870K562SDAD1
USP47ENSG00000170242.132785.515002406.902100.210702.222801.48570K562SF3A3
USP47ENSG00000170242.132014.426803146.60480-0.643402.643701.38230K562SFPQ
USP47ENSG00000170242.13828.863701075.29660-0.375502.828401.78960K562SRFBP1
USP47ENSG00000170242.133476.065202422.897500.520608.354907.13200K562SRSF1
USP47ENSG00000170242.131987.273201426.410900.478306.567505.29370K562SYNCRIP
USP47ENSG00000170242.13922.085701196.05100-0.375302.479501.59880K562TIAL1
USP47ENSG00000170242.13945.700501270.39110-0.425803.738602.60830K562TRIM56
USP47ENSG00000170242.132876.906201850.557400.6365012.3044010.59410K562U2AF2
USP47ENSG00000170242.133198.954602301.333300.4750012.6459010.99540K562WDR43
USP47ENSG00000170242.132933.701103754.12730-0.355803.710902.68500K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for USP47 is not available on ENCORE database.





9 RBPs can affect the splicing of USP47 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUSP47ENSG00000170242.13chr11+119764431197649111974287119744181197658011976711-0.143000.000050.00183excludedK562SF3B4
SEUSP47ENSG00000170242.13chr11+119764431197649111974287119744181197658011976711-0.103000.002420.07117excludedK562PRPF8
SEUSP47ENSG00000170242.13chr11+119017231190192711863521118637711190601311906127-0.274000.002530.05642excludedHepG2HNRNPK
SEUSP47ENSG00000170242.13chr11+119694911196966711963881119646591197002411970105-0.094000.000120.00223excludedHepG2U2AF2
SEUSP47ENSG00000170242.13chr11+119764431197649111974287119744181197658011976711-0.207000.000000.00000excludedK562AQR
SEUSP47ENSG00000170242.13chr11+118953461189540611863612118637711190172311901927-0.091000.000460.00882excludedK562PUS1
SEUSP47ENSG00000170242.13chr11+119017231190192711863521118637711190601311906127-0.163000.000360.01706excludedK562TARDBP
SEUSP47ENSG00000170242.13chr11+118953461189540611863612118637711190172311901927-0.122000.001800.04353excludedK562AGGF1
A3SSUSP47ENSG00000170242.13chr11+119764431197669211976580119766921197428711974418-0.282000.000020.00228shorterK562SF3B4
A3SSUSP47ENSG00000170242.13chr11+1190168711901927119017231190192711863521118637710.072000.006850.03808longerK562AQR
A3SSUSP47ENSG00000170242.13chr11+119764431197669211976580119766921197428711974418-0.323000.000000.00000shorterK562AQR
A5SSUSP47ENSG00000170242.13chr11+1192694511927172119269451192709511941702119417980.133000.000030.00891longerK562HNRNPU
RIUSP47ENSG00000170242.13chr11+1197644311976692119764431197649111976580119766920.104000.000010.00014includedK562AQR
MXEUSP47ENSG00000170242.13chr11+11913514119136531191914311919240119060131190612711924261119244070.109000.010410.065441includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for USP47 is not avaliable on ENCORE database.