TMOD3

General Information

Gene Name       : TMOD3
Gene ID             : ENSG00000138594.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMOD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMOD3ENSG00000138594.1315.5515.9215.73ENCSR000AEF
HepG2TMOD3ENSG00000138594.138.8414.1611.50ENCSR985KAT
K562TMOD3ENSG00000138594.1318.9720.8019.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMOD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMOD3 RNA is bound by 20 proteins.  







eCLIP assay for TMOD3 is not avaliable on ENCORE database.





20 proteins are bound to TMOD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr155220153952201598+3'-UTR,intron-Distal,intron-Proximal3.018324.39009K562IGF2BP2
chr155220336752203407+3'-UTR,intron-Proximal3.417506.38942K562FAM120A
chr155220227752202335+3'-UTR,intron-Distal4.125834.09791K562IGF2BP2
chr155220217552202204+3'-UTR,intron-Distal4.568577.62179K562FAM120A
chr155220197052202031+3'-UTR,intron-Distal4.764993.81167HepG2SUB1
chr155220196252202030+3'-UTR,intron-Distal4.1736413.90623K562FAM120A
chr155220220452202281+3'-UTR,intron-Distal3.7702818.55027K562FAM120A
chr155220235152202398+3'-UTR,intron-Distal3.274806.03203K562FAM120A
chr155220270352202741+3'-UTR,intron-Distal3.838968.62113K562YBX3
chr155220341452203475+3'-UTR,intron-Distal,intron-Proximal4.8683011.34516K562FAM120A
chr155220153452201604+3'-UTR,intron-Distal,intron-Proximal3.7565415.85661K562FAM120A
chr155220310252203228+3'-UTR,intron-Distal,intron-Proximal3.314969.00262K562PCBP1
chr155215503452155111+3'-UTR,5'-UTR,CDS3.545608.50021K562YBX3
chr155220187952201951+3'-UTR,intron-Distal3.086477.45155K562UPF1
chr155220274152202775+3'-UTR,intron-Distal4.294439.32771K562YBX3
chr155220189752201948+3'-UTR,intron-Distal3.033699.48225K562FAM120A
chr155220341552203463+3'-UTR,intron-Distal,intron-Proximal3.078937.37538K562UPF1
chr155220229452202320+3'-UTR,intron-Distal4.144838.35027K562FAM120A
chr155220317352203231+3'-UTR,intron-Proximal3.565217.15711K562TIA1
chr155220151652201607+3'-UTR,intron-Distal,intron-Proximal3.852493.19668HepG2UPF1
chr155220282152202876+3'-UTR,intron-Distal3.770778.94176K562FAM120A
chr155220315252203243+3'-UTR,5'-UTR,intron-Proximal4.9452613.13634HepG2PCBP2
chr155220420252204257+3'-UTR,intron-Distal5.4915619.61215K562PUM2
chr155220321352203303+3'-UTR,5'-UTR,intron-Proximal3.3434017.16463K562FAM120A
chr155220248552202508+3'-UTR,intron-Distal3.520465.98267K562FAM120A
chr155215500752155051+3'-UTR,5'-UTR,intron-Proximal3.132153.95805K562DDX3X
chr155220226352202335+3'-UTR,intron-Distal3.256049.62434K562UPF1
chr155212189952121996+5'-UTR3.784294.85687K562DROSHA
chr155212194352122016+5'-UTR5.864758.17127K562RPS3
chr155212187052121981+5'-UTR3.340884.09989K562UCHL5
chr155217990552179991+5'-UTR,CDS,intron-Proximal4.168939.40826K562AQR
chr155212196952122034+5'-UTR,intron-Proximal3.4112911.10825K562DDX3X
chr155212198152122030+5'-UTR4.103353.71613K562UCHL5
chr155212188052121969+5'-UTR3.864039.27595K562DDX3X
chr155217982652179910+5'-UTR,CDS,intron-Proximal3.665304.46864HepG2BCLAF1
chr155216147152161569+CDS3.859803.12746HepG2GRWD1
chr155215517552155218+CDS,intron-Proximal4.026883.02457HepG2BCLAF1
chr155216141252161450+CDS,intron-Proximal3.201248.20394K562YBX3
chr155215518652155208+CDS,intron-Proximal3.313656.74819K562YBX3
chr155215512352155167+CDS4.099693.86978K562YBX3
chr155217681152176850+intron-Distal3.402019.17450K562YBX3
chr155217684252176853+intron-Distal3.1267718.21107K562IGF2BP1
chr155217683852176848+intron-Distal5.11133400.00000K562TIA1
chr155217681352176851+intron-Distal5.6220736.97753HepG2TROVE2
chr155219101752191119+intron-Distal4.705095.07733HepG2PTBP1
chr155217681252176850+intron-Distal6.6990814.67371K562PUM2
chr155217682252176839+intron-Distal3.1267718.21107K562IGF2BP1
chr155217680952176851+intron-Distal8.21792400.00000K562TROVE2
chr155217682152176838+intron-Distal5.11133400.00000K562TIA1
chr155212394452123995+intron-Distal5.548017.91717K562PTBP1
chr155219100652191110+intron-Distal6.3170817.70285K562PTBP1
chr155217681652176850+intron-Distal3.882433.95668K562XRCC6
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMOD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMOD3 is not available on ENCORE database.

  • 77 RBPs can affect the levels of TMOD3.  








The Knockdown/knockout RNA-Seq assay for TMOD3 is not available on ENCORE database.





77 RBPs can affect the gene expression of TMOD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMOD3ENSG00000138594.81968.370201560.319500.335102.025901.56290HepG2AKAP1
TMOD3ENSG00000138594.8768.658701076.31990-0.485704.263503.32610HepG2AKAP8L
TMOD3ENSG00000138594.8601.082901030.30130-0.777405.856604.46980HepG2BCCIP
TMOD3ENSG00000138594.82027.402801306.823400.6335010.695109.32930HepG2CALR
TMOD3ENSG00000138594.8962.058101309.82320-0.445203.002601.85480HepG2CPSF7
TMOD3ENSG00000138594.81702.706701298.877600.390505.131304.30380HepG2CELF1
TMOD3ENSG00000138594.82874.026201752.472100.713604.106402.92750HepG2DDX59
TMOD3ENSG00000138594.8763.074101196.61410-0.6491014.3099012.94090HepG2DNAJC2
TMOD3ENSG00000138594.81099.39610834.215300.398102.899701.97740HepG2EIF3D
TMOD3ENSG00000138594.81724.335701328.082100.376602.007301.41570HepG2EIF4B
TMOD3ENSG00000138594.81550.657601046.853400.566704.004403.00100HepG2EWSR1
TMOD3ENSG00000138594.82073.066101605.530000.368602.629701.87850HepG2FIP1L1
TMOD3ENSG00000138594.8978.61080769.001700.347602.688801.91390HepG2FUBP3
TMOD3ENSG00000138594.8963.346701376.24110-0.514604.444903.58260HepG2FXR1
TMOD3ENSG00000138594.8938.231001276.68930-0.444403.182902.47150HepG2G3BP1
TMOD3ENSG00000138594.82287.576501749.623800.386702.161501.59200HepG2GPKOW
TMOD3ENSG00000138594.8709.23120987.39480-0.477402.570501.49960HepG2GRSF1
TMOD3ENSG00000138594.8735.088401218.86040-0.729509.640208.54220HepG2HNRNPA1
TMOD3ENSG00000138594.81020.049301355.75040-0.410503.602902.81950HepG2HNRNPC
TMOD3ENSG00000138594.81082.635501305.55540-0.270102.596201.90080HepG2HNRNPF
TMOD3ENSG00000138594.81042.676701292.70770-0.310102.075501.46490HepG2HNRNPK
TMOD3ENSG00000138594.8907.793601272.41210-0.487109.103807.94780HepG2HNRNPL
TMOD3ENSG00000138594.82302.445301669.679500.463503.042502.38640HepG2HNRNPLL
TMOD3ENSG00000138594.8991.667401285.60600-0.374503.559802.74680HepG2IGF2BP1
TMOD3ENSG00000138594.8925.690801305.28400-0.495803.191202.10440HepG2KHSRP
TMOD3ENSG00000138594.81090.284001376.72130-0.336502.145401.56560HepG2MAGOH
TMOD3ENSG00000138594.81641.788301299.860200.336803.339702.45420HepG2MSI2
TMOD3ENSG00000138594.81136.404001417.05130-0.318401.907301.37590HepG2NCBP2
TMOD3ENSG00000138594.8838.708501385.03640-0.723705.756404.66170HepG2NOL12
TMOD3ENSG00000138594.81073.672601333.09710-0.312203.546002.59830HepG2PARN
TMOD3ENSG00000138594.8708.055001203.76550-0.7656016.0465014.78280HepG2PCBP1
TMOD3ENSG00000138594.8814.131601201.22790-0.561208.314207.08380HepG2PPIL4
TMOD3ENSG00000138594.81201.278701027.153000.225801.968601.30820HepG2PRPF4
TMOD3ENSG00000138594.8996.25340781.690700.349802.505901.73530HepG2PRPF8
TMOD3ENSG00000138594.81728.531201402.412700.301502.683702.02290HepG2PUM2
TMOD3ENSG00000138594.81354.593901091.043700.312103.741503.04770HepG2PUS1
TMOD3ENSG00000138594.8828.066501224.55330-0.564402.788002.08090HepG2RAVER1
TMOD3ENSG00000138594.82060.629201359.282900.6001011.5704010.66410HepG2RBM22
TMOD3ENSG00000138594.81666.722501203.951500.469102.659001.99550HepG2RBM25
TMOD3ENSG00000138594.8868.890701202.55840-0.468902.489701.59290HepG2RPS10
TMOD3ENSG00000138594.81019.49530773.281700.398702.794602.00460HepG2RRP9
TMOD3ENSG00000138594.8889.208901199.37760-0.431706.453705.53170HepG2SAFB2
TMOD3ENSG00000138594.8614.31840814.71390-0.407302.580801.67210HepG2SERBP1
TMOD3ENSG00000138594.82160.295701565.274900.464702.861802.17570HepG2SF3A3
TMOD3ENSG00000138594.81226.096401398.68340-0.190001.957901.40160HepG2SMN1
TMOD3ENSG00000138594.82819.621301535.261800.8769035.3484034.08740HepG2SRFBP1
TMOD3ENSG00000138594.82069.235401331.090500.6364015.2479014.32920HepG2SRSF1
TMOD3ENSG00000138594.81092.548101282.64210-0.231401.942701.34840HepG2SRSF7
TMOD3ENSG00000138594.81474.814801008.456200.548305.096504.22330HepG2SUPV3L1
TMOD3ENSG00000138594.8885.029801308.67990-0.564307.810207.04810HepG2TIAL1
TMOD3ENSG00000138594.8899.418101320.35250-0.553909.812808.85040HepG2TRIM56
TMOD3ENSG00000138594.82796.944401373.682401.0257014.5455013.06570HepG2U2AF1
TMOD3ENSG00000138594.82855.005301528.375200.901402.738301.75450HepG2U2AF2
TMOD3ENSG00000138594.8196.87930595.78220-1.5975019.4875017.52060HepG2UCHL5
TMOD3ENSG00000138594.8534.86750923.65350-0.788202.767301.76330HepG2UPF2
TMOD3ENSG00000138594.81582.296801340.212000.239502.552701.97250HepG2UTP3
TMOD3ENSG00000138594.8577.00910992.71210-0.782806.653905.54580HepG2XRN2
TMOD3ENSG00000138594.8394.679101013.66060-1.3608041.4618039.50150HepG2ZC3H8
TMOD3ENSG00000138594.82720.099801526.708900.8331037.4038035.99120HepG2ZNF622
TMOD3ENSG00000138594.84836.188703293.297800.5542016.8051015.53020K562AGGF1
TMOD3ENSG00000138594.82437.669303426.81380-0.491406.319205.30440K562AKAP8L
TMOD3ENSG00000138594.82007.079902942.66890-0.552007.405006.52020K562AQR
TMOD3ENSG00000138594.81967.057102869.27220-0.544605.077604.02040K562CPSF6
TMOD3ENSG00000138594.81442.559902094.02420-0.537602.422301.65340K562EIF4A3
TMOD3ENSG00000138594.81504.903902177.71840-0.533103.225002.57960K562FXR1
TMOD3ENSG00000138594.81935.387802924.69930-0.595707.381906.13270K562GRSF1
TMOD3ENSG00000138594.81729.947802234.78850-0.369404.106502.79890K562HNRNPA1
TMOD3ENSG00000138594.81553.821902001.39970-0.365203.647802.97450K562HNRNPC
TMOD3ENSG00000138594.81457.551901787.19800-0.294202.428101.37260K562HNRNPF
TMOD3ENSG00000138594.82348.528803421.56370-0.542908.319406.40970K562HNRNPL
TMOD3ENSG00000138594.81878.149102632.82000-0.487304.028002.69400K562IGF2BP2
TMOD3ENSG00000138594.81969.300202768.44400-0.491403.686402.70690K562MAGOH
TMOD3ENSG00000138594.81881.139802763.04870-0.554704.267703.10050K562MATR3
TMOD3ENSG00000138594.82150.475002674.05990-0.314402.111701.34560K562METAP2
TMOD3ENSG00000138594.81301.613502626.04150-1.0126041.2921038.86430K562MTPAP
TMOD3ENSG00000138594.81476.083201970.48560-0.416803.360601.72760K562NUSAP1
TMOD3ENSG00000138594.82544.515603260.64370-0.357802.388101.62770K562PPIG
TMOD3ENSG00000138594.81377.251701794.44930-0.381703.173202.19590K562PSIP1
TMOD3ENSG00000138594.82070.478802689.60810-0.377402.299101.68690K562PTBP1
TMOD3ENSG00000138594.84988.789303398.544000.553707.545906.69540K562PUS1
TMOD3ENSG00000138594.84096.490403311.298600.306904.168103.45640K562RBM15
TMOD3ENSG00000138594.81870.593502810.76350-0.587506.787005.13300K562RPS3
TMOD3ENSG00000138594.81921.915102636.54950-0.456103.428402.64690K562SRSF1
TMOD3ENSG00000138594.82106.013402713.58450-0.365704.031002.72660K562SRSF4
TMOD3ENSG00000138594.81170.874901504.22600-0.361402.300801.37800K562SUPV3L1
TMOD3ENSG00000138594.81712.510602668.71170-0.640004.994604.02910K562TARDBP
TMOD3ENSG00000138594.81876.836002574.18140-0.455803.315102.40830K562TIA1
TMOD3ENSG00000138594.83069.883902325.621700.400505.443204.32090K562U2AF2
TMOD3ENSG00000138594.81185.648001591.95370-0.425103.438002.29550K562UCHL5
TMOD3ENSG00000138594.81204.482203093.76920-1.3610076.0865073.31230K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMOD3 is not available on ENCORE database.





1 RBPs can affect the splicing of TMOD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMOD3ENSG00000138594.8chr15+521812525218134252161413521615705218601152186142-0.066000.004680.04401excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMOD3 is not avaliable on ENCORE database.