TMEM38B

General Information

Gene Name       : TMEM38B
Gene ID             : ENSG00000095209.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM38B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM38BENSG00000095209.114.255.704.97ENCSR000AEF
HepG2TMEM38BENSG00000095209.119.5115.1712.34ENCSR985KAT
K562TMEM38BENSG00000095209.1119.2023.2521.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM38B is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM38B RNA is bound by 20 proteins.  







eCLIP assay for TMEM38B is not avaliable on ENCORE database.





20 proteins are bound to TMEM38B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9108537306108537350+3'-UTR3.034893.26914K562TIA1
chr9108536191108536281+3'-UTR,CDS3.780863.15006K562RBM15
chr9108537350108537396+3'-UTR3.088704.10307K562TIA1
chr9108536513108536576+3'-UTR4.488514.37192HepG2FUBP3
chr9108536415108536480+3'-UTR4.128394.49052K562DDX6
chr9108536392108536480+3'-UTR4.669804.80693HepG2FUBP3
chr9108537446108537546+3'-UTR3.875773.08510HepG2ZC3H11A
chr9108456939108456989+5'-UTR,CDS3.3096816.13176K562DDX3X
chr9108456834108456946+5'-UTR,CDS7.8406031.66388HepG2DDX3X
chr9108456857108456939+5'-UTR4.1931216.91650K562DDX3X
chr9108456866108457054+5'-UTR,CDS,intron-Proximal3.111103.52645HepG2NCBP2
chr9108456946108456992+5'-UTR,CDS3.914266.05537HepG2DDX3X
chr9108510430108510472+CDS,intron-Proximal3.869373.02250K562YBX3
chr9108484831108484886+CDS4.691687.09479K562LIN28B
chr9108483834108483911+CDS3.385114.21971K562TIA1
chr9108467946108468018+CDS4.569213.98716K562IGF2BP1
chr9108483816108483905+CDS,intron-Proximal4.493214.24698K562IGF2BP1
chr9108495875108495910+intron-Distal5.5812111.66247K562EXOSC5
chr9108492580108492670+intron-Distal5.341037.71312K562EXOSC5
chr9108496135108496173+intron-Distal4.5090210.61559K562EXOSC5
chr9108495047108495101+intron-Distal4.919806.41216K562EXOSC5
chr9108495711108495776+intron-Distal4.6869723.40437K562EXOSC5
chr9108478369108478454+intron-Distal5.305307.91717K562PTBP1
chr9108500546108500603+intron-Distal3.068453.14999K562EXOSC5
chr9108495055108495102+intron-Distal3.597184.80898K562HNRNPM
chr9108495917108495992+intron-Distal5.8906713.32155K562EXOSC5
chr9108528639108528732+intron-Distal4.197404.07352K562KHSRP
chr9108495513108495575+intron-Distal5.9572514.98801K562EXOSC5
chr9108496761108496826+intron-Distal3.062554.74253K562KHSRP
chr9108495101108495127+intron-Distal4.299503.89085K562EXOSC5
chr9108515049108515154+intron-Distal4.758635.58500K562UCHL5
chr9108495495108495569+intron-Distal5.022757.88580K562HNRNPM
chr9108491809108491863+intron-Distal4.118213.59909K562EXOSC5
chr9108517772108517859+intron-Distal4.068937.11359K562CSTF2T
chr9108528573108528639+intron-Distal3.830573.42844K562KHSRP
chr9108457185108457330+intron-Distal3.006983.13218K562PRPF8
chr9108496652108496761+intron-Distal4.937028.27925K562KHSRP
chr9108521760108521840+intron-Distal3.690503.33164K562SAFB2
chr9108517780108517851+intron-Distal3.771313.50219HepG2CSTF2
chr9108496470108496504+intron-Distal3.957253.01456K562EXOSC5
chr9108520135108520223+intron-Distal3.948704.15306K562SAFB2
chr9108495776108495811+intron-Distal5.196277.71312K562EXOSC5
chr9108472434108472567+intron-Distal4.041033.45817K562MATR3
chr9108478352108478488+intron-Distal4.832106.48639K562MATR3
chr9108478825108478880+intron-Distal3.666843.02234K562KHSRP
chr9108500787108500834+intron-Distal4.375503.89080K562EXOSC5
chr9108495833108495875+intron-Distal5.457259.68215K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM38B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM38B is not available on ENCORE database.

  • 99 RBPs can affect the levels of TMEM38B.  








The Knockdown/knockout RNA-Seq assay for TMEM38B is not available on ENCORE database.





99 RBPs can affect the gene expression of TMEM38B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM38BENSG00000095209.7201.46510372.87810-0.888209.405308.42030HepG2ACO1
TMEM38BENSG00000095209.7190.78850374.63730-0.9735010.485909.11000HepG2AKAP8L
TMEM38BENSG00000095209.7267.20750726.06700-1.4421020.3160018.43980HepG2ASCC1
TMEM38BENSG00000095209.7271.45070449.71160-0.728304.408603.22430HepG2BCCIP
TMEM38BENSG00000095209.7272.12530390.76040-0.522002.570001.70260HepG2BCLAF1
TMEM38BENSG00000095209.7587.84690378.987800.633205.745604.68750HepG2CALR
TMEM38BENSG00000095209.7201.25950372.80580-0.889409.603308.51200HepG2CKAP4
TMEM38BENSG00000095209.7236.26650317.04310-0.424301.976301.39050HepG2DDX21
TMEM38BENSG00000095209.7223.29800413.71150-0.889705.116603.42790HepG2DDX27
TMEM38BENSG00000095209.7293.72500840.57990-1.5169023.3975021.76250HepG2DDX3X
TMEM38BENSG00000095209.7190.76160442.16200-1.2128010.270508.89470HepG2DDX55
TMEM38BENSG00000095209.7376.32070722.12470-0.940308.596307.56610HepG2DDX6
TMEM38BENSG00000095209.7239.06380361.16380-0.595302.716302.06920HepG2DNAJC2
TMEM38BENSG00000095209.7324.59040694.14720-1.0966012.2394011.04890HepG2EIF2S1
TMEM38BENSG00000095209.7552.19480767.09070-0.474202.890702.23780HepG2EIF4A3
TMEM38BENSG00000095209.7554.66210746.91550-0.429302.045001.44890HepG2EIF4B
TMEM38BENSG00000095209.7395.36410572.98770-0.535303.753302.81400HepG2EIF4G2
TMEM38BENSG00000095209.7313.82570455.82140-0.538502.455901.72730HepG2FIP1L1
TMEM38BENSG00000095209.7453.44100774.03380-0.771507.365706.27610HepG2FXR1
TMEM38BENSG00000095209.7348.02440717.99220-1.0448011.3755010.06960HepG2G3BP1
TMEM38BENSG00000095209.7493.25540762.28990-0.628005.220703.98470HepG2G3BP2
TMEM38BENSG00000095209.7169.12640367.96640-1.121505.608504.73220HepG2HNRNPA1
TMEM38BENSG00000095209.7333.35180445.69700-0.419002.704801.99520HepG2HNRNPF
TMEM38BENSG00000095209.7415.38230727.12000-0.807808.087106.94240HepG2HNRNPK
TMEM38BENSG00000095209.7404.17160552.26650-0.450404.061503.25730HepG2HNRNPL
TMEM38BENSG00000095209.7313.90040438.88970-0.483603.024602.26960HepG2IGF2BP1
TMEM38BENSG00000095209.7443.07310729.81010-0.720006.334105.35040HepG2IGF2BP2
TMEM38BENSG00000095209.7397.26880734.08920-0.885807.145705.44950HepG2KHSRP
TMEM38BENSG00000095209.7279.05590774.30430-1.4723021.6917019.94260HepG2MAGOH
TMEM38BENSG00000095209.7437.68760778.62640-0.831007.337106.34720HepG2MATR3
TMEM38BENSG00000095209.7274.01260796.95800-1.5403022.7749021.07050HepG2NCBP2
TMEM38BENSG00000095209.7380.95300601.18630-0.658206.791005.60220HepG2NOL12
TMEM38BENSG00000095209.7122.71090406.02990-1.7263012.9606010.48230HepG2NONO
TMEM38BENSG00000095209.7237.97320410.76060-0.787503.873902.81040HepG2PABPC1
TMEM38BENSG00000095209.7490.37620709.69960-0.533303.747702.91600HepG2PABPC4
TMEM38BENSG00000095209.7258.17840402.46360-0.640502.601501.77620HepG2PARN
TMEM38BENSG00000095209.7314.75920619.67700-0.9773015.3138014.07080HepG2PCBP1
TMEM38BENSG00000095209.7358.68000630.54190-0.8139010.671909.73190HepG2PTBP1
TMEM38BENSG00000095209.7467.95220609.21900-0.380603.544402.89040HepG2PUM1
TMEM38BENSG00000095209.7355.20140461.16790-0.376702.303501.51270HepG2RBM15
TMEM38BENSG00000095209.7389.02330619.77180-0.671906.425705.43810HepG2RBM25
TMEM38BENSG00000095209.7426.03940701.73480-0.719909.149408.26900HepG2NELFE
TMEM38BENSG00000095209.7444.07830653.56660-0.557505.865205.01230HepG2RECQL
TMEM38BENSG00000095209.7335.77520480.04480-0.515702.995402.28790HepG2RPLP0
TMEM38BENSG00000095209.7170.07470283.05000-0.734903.738403.03470HepG2RPS19
TMEM38BENSG00000095209.7214.17520337.39980-0.655703.269402.42380HepG2RRP9
TMEM38BENSG00000095209.7256.74650362.07800-0.496002.066201.49650HepG2SAFB2
TMEM38BENSG00000095209.7159.81390284.13550-0.830203.415202.36600HepG2SERBP1
TMEM38BENSG00000095209.7410.97780656.48030-0.675708.113707.18340HepG2SF3B4
TMEM38BENSG00000095209.7421.43790550.28840-0.384903.085802.35020HepG2SLBP
TMEM38BENSG00000095209.7180.93290359.94670-0.992304.083302.15540HepG2SLTM
TMEM38BENSG00000095209.7229.89320422.27490-0.877204.379403.60300HepG2SMN1
TMEM38BENSG00000095209.7504.49730666.10180-0.400903.692603.13930HepG2SRFBP1
TMEM38BENSG00000095209.7515.71170685.22130-0.410003.709003.18170HepG2SRSF1
TMEM38BENSG00000095209.7336.54380566.64360-0.751608.885507.84730HepG2SRSF5
TMEM38BENSG00000095209.7323.50840437.86410-0.436702.767502.07180HepG2SRSF7
TMEM38BENSG00000095209.7333.83290557.46240-0.739709.441008.52800HepG2SRSF9
TMEM38BENSG00000095209.7180.36370392.35580-1.121309.295407.18970HepG2STIP1
TMEM38BENSG00000095209.7254.11630644.42190-1.3425027.1790025.56210HepG2SUCLG1
TMEM38BENSG00000095209.7205.38400440.16250-1.099708.608507.52220HepG2SUPV3L1
TMEM38BENSG00000095209.7384.73310615.89820-0.678807.468906.62270HepG2TAF15
TMEM38BENSG00000095209.7107.43420487.19630-2.1810010.547109.26500HepG2TARDBP
TMEM38BENSG00000095209.7177.66510295.02370-0.731704.091102.90910HepG2TFIP11
TMEM38BENSG00000095209.7206.94090395.16530-0.933204.753304.13410HepG2TIAL1
TMEM38BENSG00000095209.7229.50630398.57300-0.796301.991101.49760HepG2TRIM56
TMEM38BENSG00000095209.7392.10550560.68040-0.515903.764802.73100HepG2TUFM
TMEM38BENSG00000095209.7235.72890389.99770-0.726303.935203.19120HepG2U2AF1
TMEM38BENSG00000095209.7382.10900593.47960-0.635203.929202.92270HepG2UBE2L3
TMEM38BENSG00000095209.775.43350260.01550-1.7853016.1816014.38230HepG2UCHL5
TMEM38BENSG00000095209.7360.94300476.48960-0.400702.973202.25320HepG2UPF1
TMEM38BENSG00000095209.7255.63820403.04640-0.656802.896601.86920HepG2UPF2
TMEM38BENSG00000095209.7223.29860433.29180-0.956407.400806.22960HepG2XRN2
TMEM38BENSG00000095209.71211.03130902.390300.424305.544804.78490K562AGGF1
TMEM38BENSG00000095209.7954.021301448.74380-0.602706.519605.68110K562AQR
TMEM38BENSG00000095209.71180.59690985.202000.260902.201101.39460K562ATP5C1
TMEM38BENSG00000095209.7906.405501191.85320-0.395004.158402.77990K562CPEB4
TMEM38BENSG00000095209.7624.18730835.88580-0.421303.388702.51760K562CPSF6
TMEM38BENSG00000095209.72231.701801710.806000.383405.053403.72740K562CELF1
TMEM38BENSG00000095209.71760.810101233.347900.513609.726208.59310K562DDX47
TMEM38BENSG00000095209.71233.418201010.428600.287602.745401.87530K562DKC1
TMEM38BENSG00000095209.7745.64150990.85560-0.410204.325903.45510K562EIF2S2
TMEM38BENSG00000095209.7541.36700757.34410-0.484303.299602.01490K562EIF4B
TMEM38BENSG00000095209.71042.25960775.343000.426702.429501.77340K562G3BP2
TMEM38BENSG00000095209.7496.62430758.47090-0.610905.831504.99590K562HNRNPC
TMEM38BENSG00000095209.7456.76380677.31050-0.568404.794003.24160K562HNRNPF
TMEM38BENSG00000095209.7802.473901114.59120-0.474003.698702.45240K562HNRNPL
TMEM38BENSG00000095209.71420.35120996.500200.511205.237704.02940K562KIF1C
TMEM38BENSG00000095209.7806.020701019.33670-0.338702.708001.79650K562MATR3
TMEM38BENSG00000095209.71268.41080782.465200.696805.699604.27260K562NAA15
TMEM38BENSG00000095209.7393.28070696.33590-0.824207.842305.45840K562NONO
TMEM38BENSG00000095209.7499.78510746.77940-0.579404.355402.37260K562NUSAP1
TMEM38BENSG00000095209.7499.34720740.49930-0.568504.571402.68080K562PHF6
TMEM38BENSG00000095209.7355.21180680.04730-0.9370010.087708.12330K562PSIP1
TMEM38BENSG00000095209.71194.72200992.277500.267802.027101.44190K562PTBP1
TMEM38BENSG00000095209.71916.285301518.366700.335703.156402.28690K562PUF60
TMEM38BENSG00000095209.71767.10810931.233500.9241014.8962013.67790K562PUS1
TMEM38BENSG00000095209.71385.22630907.322700.610309.551708.47400K562RBM15
TMEM38BENSG00000095209.7930.940401252.07000-0.427603.982002.05390K562RBM17
TMEM38BENSG00000095209.7712.05590951.68450-0.418503.352802.42280K562RBM22
TMEM38BENSG00000095209.7428.46850620.44830-0.534104.374403.12650K562RCC2
TMEM38BENSG00000095209.7911.28300700.534900.379302.317801.57310K562RPS19
TMEM38BENSG00000095209.7729.27860523.890100.477103.504801.86180K562SDAD1
TMEM38BENSG00000095209.7723.97550895.59300-0.306902.715201.90740K562SF3A3
TMEM38BENSG00000095209.7411.01400588.16910-0.517003.662202.43540K562SRFBP1
TMEM38BENSG00000095209.7446.49770917.54790-1.0391024.0233021.71400K562SRPK2
TMEM38BENSG00000095209.7618.03080972.71990-0.654307.959506.76680K562SRSF1
TMEM38BENSG00000095209.7701.29580918.55440-0.389302.363701.40560K562SRSF5
TMEM38BENSG00000095209.71021.032501324.80740-0.375803.337201.69080K562SUCLG1
TMEM38BENSG00000095209.7759.94310570.418000.413803.484302.56380K562SYNCRIP
TMEM38BENSG00000095209.7742.50540949.68380-0.355002.845302.01400K562TIA1
TMEM38BENSG00000095209.7418.89250654.09250-0.642904.924403.64380K562TIAL1
TMEM38BENSG00000095209.7488.55870694.88120-0.508203.909102.74550K562TRIM56
TMEM38BENSG00000095209.7502.93830751.98960-0.580304.181002.77810K562U2AF1
TMEM38BENSG00000095209.7330.47870704.74720-1.0925013.2529010.95290K562UCHL5
TMEM38BENSG00000095209.7807.97930962.44610-0.252402.257901.60440K562UPF1
TMEM38BENSG00000095209.71018.22530856.344200.249702.308701.52970K562WDR43
TMEM38BENSG00000095209.7538.50610717.62050-0.414302.607601.44520K562XRN2
TMEM38BENSG00000095209.71247.329901632.23440-0.388003.361402.39770K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM38B is not available on ENCORE database.





10 RBPs can affect the splicing of TMEM38B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM38BENSG00000095209.7chr9+1084766461084767861084678771084680341084838171084840020.058000.004890.07275includedK562SF3B4
SETMEM38BENSG00000095209.7chr9+108510353108510471108484814108484902108536145108538893-0.098000.002630.07611excludedK562PRPF8
SETMEM38BENSG00000095209.7chr9+108476646108476786108467877108468034108483817108484002-0.075000.000150.00704excludedK562AKAP8L
SETMEM38BENSG00000095209.7chr9+108510353108510471108484814108484902108536145108538893-0.068000.000050.00296excludedK562AKAP8L
SETMEM38BENSG00000095209.7chr9+1084766461084767861084678521084680341084838171084840020.061000.000060.00112includedK562AQR
SETMEM38BENSG00000095209.7chr9+108464987108465103108456824108457053108467877108468034-0.074000.000070.00600excludedK562EFTUD2
SETMEM38BENSG00000095209.7chr9+108510353108510471108484814108484902108536145108538893-0.069000.001370.04777excludedK562TARDBP
SETMEM38BENSG00000095209.7chr9+108510353108510471108484814108484902108536145108538893-0.056000.000180.00696excludedK562RBM15
SETMEM38BENSG00000095209.7chr9+108464987108465103108456824108457053108467877108468034-0.074000.001040.04656excludedK562HNRNPK
SETMEM38BENSG00000095209.7chr9+1084649871084651031084568241084570531084678771084680340.175000.000000.00000includedK562HNRNPC
SETMEM38BENSG00000095209.7chr9+1084766461084767861084678771084680341084838171084840020.097000.004460.06346includedK562HNRNPC
MXETMEM38BENSG00000095209.7chr9+1084766461084767861084838171084839301084678771084680341084848141084849020.108000.004930.063601includedK562U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM38B is not avaliable on ENCORE database.