SYNJ2BP

General Information

Gene Name       : SYNJ2BP
Gene ID             : ENSG00000213463.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SYNJ2BP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SYNJ2BPENSG00000213463.414.0411.7412.89ENCSR000AEF
HepG2SYNJ2BPENSG00000213463.410.9815.4013.19ENCSR985KAT
K562SYNJ2BPENSG00000213463.42.122.192.16ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SYNJ2BP is not avaliable on ENCORE database.



Proteins bound to RNA
  • SYNJ2BP RNA is bound by 3 proteins.  







eCLIP assay for SYNJ2BP is not avaliable on ENCORE database.





3 proteins are bound to SYNJ2BP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr147085520670855324-CDS,intron-Distal,intron-Proximal3.149363.63043HepG2GRWD1
chr147086324070863338-intron-Distal4.2139611.27642HepG2HNRNPL
chr147086447070864569-intron-Distal3.949173.18535HepG2LSM11
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SYNJ2BP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SYNJ2BP is not available on ENCORE database.

  • 94 RBPs can affect the levels of SYNJ2BP.  








The Knockdown/knockout RNA-Seq assay for SYNJ2BP is not available on ENCORE database.





94 RBPs can affect the gene expression of SYNJ2BP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SYNJ2BPENSG00000213463.3276.66880163.111700.762204.384203.06120HepG2AATF
SYNJ2BPENSG00000213463.3287.72130202.512800.506603.070802.43510HepG2ACO1
SYNJ2BPENSG00000213463.3376.80730231.087600.705303.714403.11040HepG2AKAP1
SYNJ2BPENSG00000213463.3454.27600297.523500.610503.706102.50970HepG2AKAP8
SYNJ2BPENSG00000213463.3281.21230203.453700.466902.551601.81210HepG2AKAP8L
SYNJ2BPENSG00000213463.3367.04430191.212000.940706.881505.66810HepG2ASCC1
SYNJ2BPENSG00000213463.3310.46320154.962001.002406.690305.35900HepG2BCLAF1
SYNJ2BPENSG00000213463.3464.13140270.242700.780203.596902.92440HepG2BOP1
SYNJ2BPENSG00000213463.3353.87070213.485600.729005.343004.31550HepG2CALR
SYNJ2BPENSG00000213463.3377.92770181.662501.056708.532407.23340HepG2CIRBP
SYNJ2BPENSG00000213463.3299.87650202.456100.566703.838803.07980HepG2CKAP4
SYNJ2BPENSG00000213463.3494.18030240.727801.037506.832705.63050HepG2CNOT7
SYNJ2BPENSG00000213463.3411.10130248.090100.728504.963104.06520HepG2CPSF6
SYNJ2BPENSG00000213463.3199.15340110.172300.854004.557903.21780HepG2CSTF2
SYNJ2BPENSG00000213463.3280.62790167.001600.748703.576701.95100HepG2CSTF2T
SYNJ2BPENSG00000213463.3335.00350207.479300.691105.022404.20380HepG2CELF1
SYNJ2BPENSG00000213463.3347.51270223.136300.639004.558003.64260HepG2DAZAP1
SYNJ2BPENSG00000213463.3289.53180187.289500.628404.731903.67920HepG2DDX19B
SYNJ2BPENSG00000213463.3327.44400179.975400.863306.098805.13670HepG2DDX21
SYNJ2BPENSG00000213463.3318.25890176.108400.853606.084304.73530HepG2DDX24
SYNJ2BPENSG00000213463.3377.91360221.378200.771404.850004.04050HepG2DDX3X
SYNJ2BPENSG00000213463.3266.80370190.136000.488601.834201.32060HepG2DDX6
SYNJ2BPENSG00000213463.3277.28400193.746600.517102.772602.09470HepG2DKC1
SYNJ2BPENSG00000213463.3290.27570165.721400.808604.326202.92780HepG2AGO1
SYNJ2BPENSG00000213463.3311.01090182.814500.766504.344103.61040HepG2EIF2S1
SYNJ2BPENSG00000213463.3316.61440217.913700.538902.970701.75500HepG2EIF2S2
SYNJ2BPENSG00000213463.3274.44930169.950100.691304.100202.81310HepG2EIF3G
SYNJ2BPENSG00000213463.3338.27440196.691500.782203.845003.03890HepG2EIF4B
SYNJ2BPENSG00000213463.3311.87620210.847600.564702.767701.95200HepG2EIF4G2
SYNJ2BPENSG00000213463.3390.85430248.834400.651304.139902.82870HepG2ESF1
SYNJ2BPENSG00000213463.3232.03900145.933000.669003.026801.69990HepG2FKBP4
SYNJ2BPENSG00000213463.3243.24580140.118400.795703.525902.64310HepG2FUBP3
SYNJ2BPENSG00000213463.3302.17630203.810000.568102.691102.00870HepG2FXR1
SYNJ2BPENSG00000213463.3320.92510189.088400.763104.473403.63510HepG2G3BP1
SYNJ2BPENSG00000213463.3383.34540200.709200.933406.966305.53810HepG2G3BP2
SYNJ2BPENSG00000213463.3293.04310176.393400.732203.804402.60580HepG2GNB2L1
SYNJ2BPENSG00000213463.3466.26010281.209200.729404.757303.93240HepG2GPKOW
SYNJ2BPENSG00000213463.3279.96800193.334100.534103.375702.30330HepG2HDGF
SYNJ2BPENSG00000213463.3453.68530238.155600.929705.103803.17650HepG2HLTF
SYNJ2BPENSG00000213463.3312.92690205.046900.609803.819702.74770HepG2HNRNPA2B1
SYNJ2BPENSG00000213463.3319.76900203.273700.653504.804903.93430HepG2HNRNPL
SYNJ2BPENSG00000213463.3413.77870268.364900.624603.716802.99740HepG2HNRNPLL
SYNJ2BPENSG00000213463.3275.51810200.134600.461102.147801.30950HepG2HNRNPM
SYNJ2BPENSG00000213463.3315.82330192.213000.716304.080203.27460HepG2IGF2BP2
SYNJ2BPENSG00000213463.3252.40700156.128600.692903.699901.82200HepG2CCAR2
SYNJ2BPENSG00000213463.3535.20500372.253600.523702.723301.90030HepG2LARP4
SYNJ2BPENSG00000213463.3349.03500203.880900.775504.829503.97060HepG2MAGOH
SYNJ2BPENSG00000213463.3438.47840273.741600.679603.127202.09200HepG2MTPAP
SYNJ2BPENSG00000213463.3295.32860160.930700.875803.896102.58260HepG2NONO
SYNJ2BPENSG00000213463.3371.32430256.205900.535303.179101.46020HepG2NUP35
SYNJ2BPENSG00000213463.3327.61290186.927500.809405.072204.10630HepG2PABPC4
SYNJ2BPENSG00000213463.3279.55290169.610100.720804.872604.10260HepG2PCBP1
SYNJ2BPENSG00000213463.3349.97210235.211800.573202.547101.55130HepG2PCBP2
SYNJ2BPENSG00000213463.3301.72530220.173500.454502.512001.77070HepG2PRPF4
SYNJ2BPENSG00000213463.3319.72800135.293501.240709.686708.28430HepG2PRPF8
SYNJ2BPENSG00000213463.3376.81200172.576101.1265012.1128011.12830HepG2PTBP1
SYNJ2BPENSG00000213463.3328.29370211.198600.636301.955201.44200HepG2PUF60
SYNJ2BPENSG00000213463.3342.00070224.182000.609204.560103.83920HepG2PUM1
SYNJ2BPENSG00000213463.3313.53990224.027400.484902.369301.74820HepG2PUM2
SYNJ2BPENSG00000213463.3401.51740206.270600.9608011.2400010.14060HepG2PUS1
SYNJ2BPENSG00000213463.3383.08920186.922301.035109.599108.53620HepG2QKI
SYNJ2BPENSG00000213463.3580.47690298.810800.9579012.6921011.74460HepG2RBM22
SYNJ2BPENSG00000213463.3296.70280169.637200.806505.242604.34200HepG2RBM25
SYNJ2BPENSG00000213463.3311.18200192.067700.696004.406303.75180HepG2NELFE
SYNJ2BPENSG00000213463.3309.77580178.872100.792205.699504.85470HepG2RECQL
SYNJ2BPENSG00000213463.3269.08750173.960800.629203.347302.67930HepG2RPS19
SYNJ2BPENSG00000213463.3300.06590192.189300.642703.244902.37770HepG2RPS2
SYNJ2BPENSG00000213463.3247.02490133.838600.884104.636403.64870HepG2RRP9
SYNJ2BPENSG00000213463.3431.87030246.950600.806303.771901.97560HepG2RTF1
SYNJ2BPENSG00000213463.3246.49100174.617300.497202.135101.30720HepG2SERBP1
SYNJ2BPENSG00000213463.3332.33140179.689300.887007.153106.27360HepG2SF3B4
SYNJ2BPENSG00000213463.3318.06980202.476500.651504.630603.75880HepG2SLBP
SYNJ2BPENSG00000213463.3347.47790231.450500.586102.830501.86270HepG2SMNDC1
SYNJ2BPENSG00000213463.3504.67810295.549200.771904.204003.23370HepG2SNRNP70
SYNJ2BPENSG00000213463.3482.36620337.503700.515104.370903.78290HepG2SRFBP1
SYNJ2BPENSG00000213463.3262.79330166.993800.654003.158201.42000HepG2SRP68
SYNJ2BPENSG00000213463.3652.73120187.550501.7991038.1171036.80830HepG2SRSF1
SYNJ2BPENSG00000213463.3394.17350208.510300.918609.311008.25390HepG2SRSF5
SYNJ2BPENSG00000213463.3312.43550152.576901.0339010.176609.23460HepG2SRSF9
SYNJ2BPENSG00000213463.3431.75130293.046900.559003.129202.59160HepG2SSB
SYNJ2BPENSG00000213463.3397.54770237.148700.745206.772205.87390HepG2SUCLG1
SYNJ2BPENSG00000213463.3384.94040168.560401.1913013.3151012.22410HepG2TAF15
SYNJ2BPENSG00000213463.3240.17600154.902400.632603.275902.37110HepG2TIA1
SYNJ2BPENSG00000213463.3392.06640243.018100.689905.453404.79920HepG2TIAL1
SYNJ2BPENSG00000213463.3357.79330206.308200.794205.660104.35460HepG2TUFM
SYNJ2BPENSG00000213463.3362.87620218.358300.732703.522302.57300HepG2UBE2L3
SYNJ2BPENSG00000213463.3387.88300269.019200.527803.740602.54170HepG2UTP18
SYNJ2BPENSG00000213463.3372.10730223.208000.737203.629502.16110HepG2XRCC5
SYNJ2BPENSG00000213463.3290.59240217.296600.419202.207101.59720HepG2ZC3H8
SYNJ2BPENSG00000213463.3334.55210226.779400.560802.583301.33550HepG2ZRANB2
SYNJ2BPENSG00000213463.372.9221032.722801.156002.767201.89350K562BOP1
SYNJ2BPENSG00000213463.3104.8904049.617601.079903.058801.93320K562CNOT7
SYNJ2BPENSG00000213463.379.1278034.797401.185103.298002.43970K562CPSF6
SYNJ2BPENSG00000213463.372.1870034.430401.068002.916702.18190K562EIF2S2
SYNJ2BPENSG00000213463.382.2704035.398401.216603.435702.47970K562FMR1
SYNJ2BPENSG00000213463.3106.2689045.882301.211603.830702.94600K562GRSF1
SYNJ2BPENSG00000213463.372.1191031.342201.202203.006702.38820K562HNRNPC
SYNJ2BPENSG00000213463.372.0233028.363001.344403.221202.20610K562KRR1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SYNJ2BP is not available on ENCORE database.





1 RBPs can affect the splicing of SYNJ2BP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESYNJ2BPENSG00000213463.3chr14-7085518670855323708423927084248870883616708837620.337000.000410.03409includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SYNJ2BP is not avaliable on ENCORE database.