ST6GALNAC4

General Information

Gene Name       : ST6GALNAC4
Gene ID             : ENSG00000136840.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ST6GALNAC4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ST6GALNAC4ENSG00000136840.181.879.215.54ENCSR000AEF
HepG2ST6GALNAC4ENSG00000136840.1825.294.8315.06ENCSR985KAT
K562ST6GALNAC4ENSG00000136840.1824.5410.3617.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ST6GALNAC4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ST6GALNAC4 RNA is bound by 8 proteins.  







eCLIP assay for ST6GALNAC4 is not avaliable on ENCORE database.





8 proteins are bound to ST6GALNAC4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9130670236130670294-3'-UTR,intron-Distal3.595735.10442K562YBX3
chr9130670334130670434-3'-UTR,intron-Distal4.332173.95192HepG2UPF1
chr9130670307130670410-3'-UTR,intron-Distal3.157554.75394HepG2LARP4
chr9130674915130674959-3'-UTR,5'-UTR,CDS,intron-Distal5.392726.06940HepG2DDX3X
chr9130670301130670350-3'-UTR,intron-Distal5.3259813.04183K562PABPC4
chr9130677113130677176-5'-UTR,CDS,intron-Distal,intron-Proximal3.969434.22551K562SF3B4
chr9130679181130679294-5'-UTR,intron-Distal,intron-Proximal4.216467.63030HepG2DDX3X
chr9130677001130677098-5'-UTR,CDS,intron-Distal,intron-Proximal5.132919.31281HepG2DDX3X
chr9130672183130672236-CDS,intron-Distal,intron-Proximal3.929354.00320K562AQR
chr9130670764130670836-CDS,intron-Distal4.552045.79022K562YBX3
chr9130674453130674521-intron-Distal,intron-Proximal3.957163.18234K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ST6GALNAC4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ST6GALNAC4 is not available on ENCORE database.

  • 101 RBPs can affect the levels of ST6GALNAC4.  








The Knockdown/knockout RNA-Seq assay for ST6GALNAC4 is not available on ENCORE database.





101 RBPs can affect the gene expression of ST6GALNAC4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ST6GALNAC4ENSG00000136840.14251.87740158.419600.668903.890902.67880HepG2YBX3
ST6GALNAC4ENSG00000136840.14403.22790248.776900.696605.699604.84030HepG2CELF1
ST6GALNAC4ENSG00000136840.14382.87980267.566200.516902.930402.17030HepG2DAZAP1
ST6GALNAC4ENSG00000136840.14518.07960402.793500.363003.020502.15170HepG2DDX19B
ST6GALNAC4ENSG00000136840.14489.54310237.741301.041904.446803.48940HepG2DDX55
ST6GALNAC4ENSG00000136840.14318.83630416.69260-0.386202.370101.73610HepG2DKC1
ST6GALNAC4ENSG00000136840.14299.26390155.546200.944008.025806.87870HepG2DNAJC21
ST6GALNAC4ENSG00000136840.14300.74730154.187100.963808.229507.17930HepG2DNAJC2
ST6GALNAC4ENSG00000136840.14178.74350263.91020-0.562203.293302.39420HepG2EIF4G1
ST6GALNAC4ENSG00000136840.14533.06720252.819901.0761011.204009.63080HepG2EIF4G2
ST6GALNAC4ENSG00000136840.14443.52980592.79980-0.418503.820203.13400HepG2ETF1
ST6GALNAC4ENSG00000136840.14235.36720425.54730-0.854407.892806.49010HepG2EWSR1
ST6GALNAC4ENSG00000136840.14362.83760507.02600-0.482703.332602.47370HepG2FUBP3
ST6GALNAC4ENSG00000136840.14443.53400286.795500.628902.193301.62000HepG2GPKOW
ST6GALNAC4ENSG00000136840.14303.46980415.78580-0.454303.467402.38300HepG2HDGF
ST6GALNAC4ENSG00000136840.14237.75260138.947400.774803.574102.00210HepG2HNRNPA0
ST6GALNAC4ENSG00000136840.14216.53480135.664600.674502.867601.44080HepG2HNRNPAB
ST6GALNAC4ENSG00000136840.14376.55910287.087700.391302.104601.47290HepG2HNRNPF
ST6GALNAC4ENSG00000136840.14282.04580511.53650-0.858902.111601.49610HepG2HNRNPK
ST6GALNAC4ENSG00000136840.14433.41060243.753600.830202.426901.79160HepG2HNRNPL
ST6GALNAC4ENSG00000136840.14167.49810481.61290-1.523703.122102.07410HepG2IGF2BP3
ST6GALNAC4ENSG00000136840.14257.05660177.247800.536203.100302.32830HepG2ILF2
ST6GALNAC4ENSG00000136840.14239.25990156.549200.611902.607401.46100HepG2KHDRBS1
ST6GALNAC4ENSG00000136840.14623.90470388.765200.682304.444003.38370HepG2LARP4
ST6GALNAC4ENSG00000136840.14257.83730167.091900.625702.759101.62510HepG2LARP7
ST6GALNAC4ENSG00000136840.14263.39250544.40570-1.047502.800202.14160HepG2MAGOH
ST6GALNAC4ENSG00000136840.14406.62410265.314400.615904.404603.44340HepG2NOL12
ST6GALNAC4ENSG00000136840.14276.50070132.165401.064805.374703.40410HepG2NOLC1
ST6GALNAC4ENSG00000136840.14416.98990218.387700.933004.103902.75550HepG2NONO
ST6GALNAC4ENSG00000136840.14310.84830154.768401.006009.348908.03710HepG2PPIL4
ST6GALNAC4ENSG00000136840.14109.76480183.31370-0.739903.116602.26410HepG2PRPF8
ST6GALNAC4ENSG00000136840.14328.74280480.72150-0.548205.197204.49610HepG2PTBP1
ST6GALNAC4ENSG00000136840.14480.03040253.246400.922508.620907.64450HepG2PUF60
ST6GALNAC4ENSG00000136840.14554.35640268.809401.0441016.9287015.71900HepG2PUM1
ST6GALNAC4ENSG00000136840.14225.78350443.63530-0.9744012.5553011.40590HepG2PUS1
ST6GALNAC4ENSG00000136840.14336.63430520.63970-0.629105.491204.65530HepG2QKI
ST6GALNAC4ENSG00000136840.14378.22990495.46270-0.389502.646102.13680HepG2RBM22
ST6GALNAC4ENSG00000136840.14290.51640472.51160-0.701704.488603.64620HepG2RBM25
ST6GALNAC4ENSG00000136840.14305.77180201.495900.601602.484801.54980HepG2RBM27
ST6GALNAC4ENSG00000136840.14191.82670534.99940-1.4797023.9107022.63270HepG2NELFE
ST6GALNAC4ENSG00000136840.14310.62690498.27470-0.681806.698705.79950HepG2RECQL
ST6GALNAC4ENSG00000136840.14266.51670164.958800.692003.112702.26610HepG2RPS3A
ST6GALNAC4ENSG00000136840.14817.79890154.527702.4038083.1371080.57330HepG2SAFB2
ST6GALNAC4ENSG00000136840.14257.50740155.332500.729203.460702.00730HepG2SART3
ST6GALNAC4ENSG00000136840.14354.70870500.49860-0.496703.969503.28240HepG2SF3B4
ST6GALNAC4ENSG00000136840.14428.32090242.777100.819008.551907.42420HepG2SLBP
ST6GALNAC4ENSG00000136840.14284.29460180.200600.657704.609303.81430HepG2SMN1
ST6GALNAC4ENSG00000136840.14297.52490115.354701.366804.482802.73490HepG2SNRNP200
ST6GALNAC4ENSG00000136840.14385.52520559.59240-0.537605.399304.76330HepG2SRFBP1
ST6GALNAC4ENSG00000136840.14164.64070522.40990-1.6659028.9714027.79880HepG2SRSF1
ST6GALNAC4ENSG00000136840.14376.32530250.016600.589904.166103.42600HepG2SRSF5
ST6GALNAC4ENSG00000136840.14296.61550485.83320-0.711907.876107.09670HepG2SSB
ST6GALNAC4ENSG00000136840.14408.08690284.361100.521103.637702.94310HepG2SUCLG1
ST6GALNAC4ENSG00000136840.14483.58970297.516500.700704.082102.95130HepG2SUPT6H
ST6GALNAC4ENSG00000136840.14124.77420236.64330-0.923404.825403.96990HepG2SUPV3L1
ST6GALNAC4ENSG00000136840.14183.83170469.55630-1.3529018.8819017.60560HepG2TAF15
ST6GALNAC4ENSG00000136840.14401.67910266.830500.590002.955602.20940HepG2TARDBP
ST6GALNAC4ENSG00000136840.14298.73260158.598800.913405.238303.93000HepG2TFIP11
ST6GALNAC4ENSG00000136840.14618.57980170.119101.8623044.8657042.95700HepG2TRIM56
ST6GALNAC4ENSG00000136840.14216.96370377.05990-0.797302.536901.93310HepG2U2AF1
ST6GALNAC4ENSG00000136840.14210.51140139.775700.590702.275701.58660HepG2UCHL5
ST6GALNAC4ENSG00000136840.14555.53280344.338900.689908.243107.14380HepG2UPF1
ST6GALNAC4ENSG00000136840.14446.89240332.446000.426703.022202.40150HepG2UTP3
ST6GALNAC4ENSG00000136840.14225.47030147.764000.609502.449201.42660HepG2XPO5
ST6GALNAC4ENSG00000136840.14154.28700318.03040-1.0435010.395209.23140HepG2ZC3H8
ST6GALNAC4ENSG00000136840.14581.84740378.707200.619506.993506.22770HepG2ZNF622
ST6GALNAC4ENSG00000136840.14700.83630481.120900.542605.858605.08130K562AGGF1
ST6GALNAC4ENSG00000136840.14885.96680500.624400.823403.231502.52410K562AKAP8L
ST6GALNAC4ENSG00000136840.14376.47300635.69540-0.755806.031105.22210K562AQR
ST6GALNAC4ENSG00000136840.14426.21700268.310300.667604.004302.37250K562BCCIP
ST6GALNAC4ENSG00000136840.14450.05200259.323700.795207.842806.19620K562BCLAF1
ST6GALNAC4ENSG00000136840.14577.01100357.256400.691505.897404.20700K562CCAR1
ST6GALNAC4ENSG00000136840.14290.71090182.775900.669403.888702.36020K562CIRBP
ST6GALNAC4ENSG00000136840.14361.73840196.735800.878604.241402.89540K562CSTF2
ST6GALNAC4ENSG00000136840.14652.03030474.902100.457203.800302.37400K562DDX21
ST6GALNAC4ENSG00000136840.14668.90780497.179800.427904.014703.24910K562DDX47
ST6GALNAC4ENSG00000136840.14164.75590103.444600.671402.659401.87650K562EIF3G
ST6GALNAC4ENSG00000136840.14480.27640369.207000.379302.551301.45910K562EIF4B
ST6GALNAC4ENSG00000136840.14594.60050455.929300.383002.615801.38670K562EXOSC5
ST6GALNAC4ENSG00000136840.1417.7889083.35220-2.228208.199006.85020K562G3BP2
ST6GALNAC4ENSG00000136840.14591.35930438.882300.430102.655201.87520K562HSPD1
ST6GALNAC4ENSG00000136840.14464.30190170.618601.444204.455403.02710K562IGF2BP2
ST6GALNAC4ENSG00000136840.14287.35500179.230900.680904.410103.34260K562MAGOH
ST6GALNAC4ENSG00000136840.14671.65250508.574900.401202.506501.49970K562MAK16
ST6GALNAC4ENSG00000136840.14355.52870178.854700.991102.483801.61310K562MATR3
ST6GALNAC4ENSG00000136840.14425.16810542.32230-0.351102.522801.74950K562MTPAP
ST6GALNAC4ENSG00000136840.14280.00000409.42660-0.548202.539701.36520K562NCBP2
ST6GALNAC4ENSG00000136840.14440.19260217.792301.015103.395401.93660K562NONO
ST6GALNAC4ENSG00000136840.14511.88000312.714100.710902.766901.77660K562PABPN1
ST6GALNAC4ENSG00000136840.14597.80700367.460400.702003.716102.74410K562PPIG
ST6GALNAC4ENSG00000136840.14322.59880174.140200.889407.475906.42120K562PTBP1
ST6GALNAC4ENSG00000136840.14592.04570815.61510-0.462202.879202.04680K562PUF60
ST6GALNAC4ENSG00000136840.14510.60940867.83200-0.765205.016503.54440K562PUM1
ST6GALNAC4ENSG00000136840.14670.12460496.508300.432502.310801.80530K562PUS1
ST6GALNAC4ENSG00000136840.14788.02270483.750800.703908.924507.88480K562RBM15
ST6GALNAC4ENSG00000136840.14270.82710166.934500.698004.158003.10300K562RBM22
ST6GALNAC4ENSG00000136840.14285.30340162.763900.809604.999202.96270K562RBM34
ST6GALNAC4ENSG00000136840.14460.94960290.721000.664903.172202.10380K562RCC2
ST6GALNAC4ENSG00000136840.14411.52590218.620700.912504.807203.72820K562RPS19
ST6GALNAC4ENSG00000136840.14292.11820179.355100.703603.170602.08940K562RPS3
ST6GALNAC4ENSG00000136840.14474.77200594.58100-0.324602.219701.48290K562SF3A3
ST6GALNAC4ENSG00000136840.14141.84660237.96040-0.746403.303102.23830K562SF3B1
ST6GALNAC4ENSG00000136840.14581.84990348.732300.738402.911801.55980K562SFPQ
ST6GALNAC4ENSG00000136840.14414.22740275.569800.587902.510001.54470K562SRFBP1
ST6GALNAC4ENSG00000136840.14324.45570170.724700.926207.090305.96610K562SRSF1
ST6GALNAC4ENSG00000136840.14309.55360173.144200.838105.224503.69550K562SRSF4
ST6GALNAC4ENSG00000136840.14292.29470161.259600.857906.027304.37720K562SRSF5
ST6GALNAC4ENSG00000136840.14382.33510172.764601.145909.461508.03420K562TARDBP
ST6GALNAC4ENSG00000136840.14323.55870166.656200.957107.741706.26720K562TIA1
ST6GALNAC4ENSG00000136840.14312.57910163.586600.934106.672704.79920K562TRA2A
ST6GALNAC4ENSG00000136840.14548.54310325.564000.752604.649303.34920K562TRIM56
ST6GALNAC4ENSG00000136840.1437.5626083.46860-1.151903.693002.76150K562U2AF2
ST6GALNAC4ENSG00000136840.14354.95220219.936200.690402.662401.66580K562UCHL5
ST6GALNAC4ENSG00000136840.14396.57880224.110700.823303.829602.32330K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ST6GALNAC4 is not available on ENCORE database.





11 RBPs can affect the splicing of ST6GALNAC4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEST6GALNAC4ENSG00000136840.14chr9-130672229130672337130670165130670860130674546130674959-0.365000.000100.00310excludedK562SRSF1
SEST6GALNAC4ENSG00000136840.14chr9-1306786861306787731306769341306771201306791041306792970.342000.000220.08775includedK562TIA1
SEST6GALNAC4ENSG00000136840.14chr9-130678686130678773130676934130677120130679104130679297-0.188000.000200.00516excludedHepG2U2AF1
SEST6GALNAC4ENSG00000136840.14chr9-1306726041306728071306722291306723371306745461306746170.671000.000000.00000includedHepG2HNRNPK
SEST6GALNAC4ENSG00000136840.14chr9-130678686130678773130676934130677120130679104130679297-0.231000.000100.00165excludedK562AQR
SEST6GALNAC4ENSG00000136840.14chr9-130672693130672807130672229130672337130674546130674617-0.229000.000690.06157excludedHepG2SRSF7
SEST6GALNAC4ENSG00000136840.14chr9-130678686130678773130676934130677120130679104130679297-0.267000.000170.00604excludedHepG2SRSF1
SEST6GALNAC4ENSG00000136840.14chr9-130678686130678773130676934130677120130679104130679297-0.208000.000140.00964excludedHepG2SF3B4
SEST6GALNAC4ENSG00000136840.14chr9-1306726931306728071306722291306723371306745461306746170.437000.001080.04758includedK562HNRNPK
SEST6GALNAC4ENSG00000136840.14chr9-1306786861306787731306769341306771201306791041306792970.391000.000010.00081includedK562PTBP1
SEST6GALNAC4ENSG00000136840.14chr9-130672229130672807130670596130670860130674546130674617-0.203000.004390.06273excludedK562HNRNPC
A3SSST6GALNAC4ENSG00000136840.14chr9-1306722291306728071306722291306723371306745461306749590.695000.000000.00000longerHepG2HNRNPK
A3SSST6GALNAC4ENSG00000136840.14chr9-1306722291306728071306722291306723371306745461306749590.270000.000030.00679longerHepG2PCBP1
A3SSST6GALNAC4ENSG00000136840.14chr9-1306722291306728071306722291306723371306745461306749590.306000.000000.00024longerHepG2SF3B4
MXEST6GALNAC4ENSG00000136840.14chr9-1306769341306771201306786861306787731306745461306749591306791041306793050.311000.008740.072201includedHepG2SFPQ
MXEST6GALNAC4ENSG00000136840.14chr9-1306745461306749591306769341306771201306722291306723371306786861306787730.221000.008990.073631includedHepG2SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ST6GALNAC4 is not avaliable on ENCORE database.