SNAI3-AS1

General Information

Gene Name       : SNAI3-AS1
Gene ID             : ENSG00000260630.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNAI3-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNAI3-AS1ENSG00000260630.61.421.471.44ENCSR000AEF
HepG2SNAI3-AS1ENSG00000260630.64.731.403.07ENCSR985KAT
K562SNAI3-AS1ENSG00000260630.61.381.141.26ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNAI3-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNAI3-AS1 RNA is bound by 27 proteins.  







eCLIP assay for SNAI3-AS1 is not avaliable on ENCORE database.





27 proteins are bound to SNAI3-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr168873028488730414+intron-Distal3.9324512.47473HepG2CSTF2T
chr168873130188731339+intron-Distal4.893754.54503HepG2ILF3
chr168872988888729995+intron-Distal,intron-Proximal4.8783723.77415HepG2RBFOX2
chr168873033588730368+intron-Distal3.803933.07008K562NONO
chr168873019888730265+intron-Distal4.254374.93264HepG2FUS
chr168873133988731389+intron-Distal5.232368.21857HepG2ILF3
chr168873427788734346+intron-Distal4.001773.57543K562ILF3
chr168873003888730118+intron-Distal3.779034.71513K562NONO
chr168872988488730018+intron-Distal,intron-Proximal4.4505014.48422HepG2CSTF2T
chr168873021788730268+intron-Distal4.603355.15091HepG2DGCR8
chr168873477588734809+intron-Distal4.316035.08471HepG2HNRNPK
chr168873392488734029+intron-Distal4.370267.56402K562ILF3
chr168872991788729986+intron-Distal3.493663.17464K562DDX6
chr168873021588730285+intron-Distal3.7512913.06671HepG2NKRF
chr168873008988730263+intron-Distal5.9800615.60714K562RBFOX2
chr168872984388729944+intron-Distal,intron-Proximal3.209293.19036K562XRN2
chr168872992188729986+intron-Distal4.286465.87587K562GEMIN5
chr168873021088730266+intron-Distal3.717909.87941HepG2RBFOX2
chr168872985988729953+intron-Distal,intron-Proximal4.261748.31576K562DROSHA
chr168873027888730335+intron-Distal3.462094.25264K562NONO
chr168873027488730372+intron-Distal3.145585.31934HepG2XPO5
chr168873022088730284+intron-Distal4.214188.04402HepG2GTF2F1
chr168873000288730057+intron-Distal3.843358.58854HepG2RBFOX2
chr168873026888730352+intron-Distal3.833343.09122HepG2PTBP1
chr168872991288729979+intron-Distal3.680306.18982HepG2NKRF
chr168873400588734064+intron-Distal3.190355.52984HepG2ILF3
chr168873021388730282+intron-Distal3.513864.12785HepG2DROSHA
chr168873015588730220+intron-Distal3.744648.30622HepG2GTF2F1
chr168873009488730132+intron-Distal3.682753.29596HepG2XRN2
chr168872999788730038+intron-Distal4.309904.48497K562NONO
chr168873391988734077+intron-Distal5.117939.69896K562CSTF2T
chr168874463388744689+intron-Distal4.080913.06140HepG2NKRF
chr168872987888729983+intron-Distal,intron-Proximal3.255737.95421HepG2FAM120A
chr168873012788730296+intron-Distal4.330603.94788K562AKAP8L
chr168873040088730470+intron-Distal3.186424.28669HepG2SFPQ
chr168873001888730203+intron-Distal3.0771610.08957HepG2CSTF2T
chr168872982988730015+intron-Distal,intron-Proximal4.3231113.92071K562RBFOX2
chr168873313688733259+intron-Distal4.183063.81649K562ILF3
chr168873394688734038+intron-Distal3.301823.57558HepG2POLR2G
chr168873005288730123+intron-Distal3.604536.93753HepG2SFPQ
chr168873031488730369+intron-Distal3.422224.13948HepG2PRPF4
chr168873113888731198+intron-Distal3.179573.86489HepG2PABPN1
chr168873475588734775+intron-Distal4.174134.36307HepG2HNRNPK
chr168873392488734029+intron-Distal4.377818.79127HepG2DDX59
chr168873012888730263+intron-Distal4.1199616.58771HepG2PRPF4
chr168872994388729975+intron-Distal4.477803.30705HepG2GTF2F1
chr168872995288730010+intron-Distal4.350894.66899HepG2HNRNPM
chr168873013988730210+intron-Distal4.6155818.68659HepG2RBFOX2
chr168873021088730278+intron-Distal4.602674.32196HepG2PCBP2
chr168873014888730222+intron-Distal3.972487.33270K562DROSHA
chr168873013288730207+intron-Distal3.945486.36112HepG2XRN2
chr168873027388730375+intron-Distal3.419778.27026HepG2FAM120A
chr168872990188729981+intron-Distal,intron-Proximal4.861526.16396K562NONO
chr168873014188730214+intron-Distal4.106893.19125K562GTF2F1
chr168873020988730266+intron-Distal3.443718.61990HepG2CSTF2T
chr168873022088730275+intron-Distal5.193489.54707K562NONO
chr168872985388729917+intron-Distal,intron-Proximal3.390433.17464K562DDX6
chr168873016388730269+intron-Distal4.535796.08649K562CSTF2T
chr168873005788730139+intron-Distal6.7491027.60214HepG2RBFOX2
chr168873016688730276+intron-Distal3.227654.36012HepG2SFPQ
chr168872982388729905+intron-Proximal3.158903.10641K562HNRNPM
chr168873784388737922+intron-Proximal5.146716.35567HepG2PRPF8
chr168872981988729886+intron-Proximal3.965533.02711K562EWSR1
chr168872978988729839+intron-Proximal3.281613.58549K562NONO
chr168873850788738569+intron-Proximal3.3749412.22854HepG2PRPF8
chr168872983988729886+intron-Proximal4.602384.48497K562NONO
chr168873852388738577+intron-Proximal5.045397.13585K562PRPF8
chr168872985688729892+intron-Proximal3.934193.17208K562GEMIN5
chr168872981888729888+intron-Proximal4.2992715.55896HepG2RBFOX2
chr168872975188729821+intron-Proximal4.791685.85636HepG2NCBP2
chr168872983188729873+intron-Proximal4.764284.92128HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNAI3-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNAI3-AS1 is not available on ENCORE database.

  • 73 RBPs can affect the levels of SNAI3-AS1.  








The Knockdown/knockout RNA-Seq assay for SNAI3-AS1 is not available on ENCORE database.





73 RBPs can affect the gene expression of SNAI3-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNAI3-AS1ENSG00000260630.273.25460144.21300-0.977204.016203.30860HepG2ACO1
SNAI3-AS1ENSG00000260630.264.75360210.32910-1.699608.197907.33470HepG2AKAP1
SNAI3-AS1ENSG00000260630.2115.7139062.938700.878402.379001.51110HepG2BCCIP
SNAI3-AS1ENSG00000260630.2128.3199054.689801.230304.414603.30310HepG2BCLAF1
SNAI3-AS1ENSG00000260630.293.5782042.697901.131902.245901.70130HepG2BOP1
SNAI3-AS1ENSG00000260630.2104.5571047.364601.142304.203503.27730HepG2CALR
SNAI3-AS1ENSG00000260630.275.21090165.32930-1.136305.304504.25140HepG2CIRBP
SNAI3-AS1ENSG00000260630.2125.9915037.224701.758907.087005.86600HepG2CNOT7
SNAI3-AS1ENSG00000260630.2199.5442039.198602.3477018.6250017.03120HepG2CPSF6
SNAI3-AS1ENSG00000260630.2128.0303070.439400.861903.921203.06290HepG2DAZAP1
SNAI3-AS1ENSG00000260630.273.70000133.39810-0.856003.691902.74700HepG2DDX19B
SNAI3-AS1ENSG00000260630.2171.9204046.840901.8758012.1830010.87640HepG2DDX21
SNAI3-AS1ENSG00000260630.2178.4324069.288001.364608.185406.54180HepG2DDX5
SNAI3-AS1ENSG00000260630.2102.14220173.13050-0.761302.467001.88140HepG2DDX6
SNAI3-AS1ENSG00000260630.288.0945040.967001.104503.526402.42680HepG2DHX30
SNAI3-AS1ENSG00000260630.2241.50000137.985000.807405.008204.14540HepG2DKC1
SNAI3-AS1ENSG00000260630.2109.5885042.478901.367206.029405.02360HepG2DNAJC21
SNAI3-AS1ENSG00000260630.2437.48480183.791701.2511011.257009.99730HepG2EIF4A3
SNAI3-AS1ENSG00000260630.2264.30180179.027300.561901.965501.37870HepG2EIF4B
SNAI3-AS1ENSG00000260630.2135.1066066.588001.020704.115403.13290HepG2EIF4G2
SNAI3-AS1ENSG00000260630.2181.32560129.639800.484001.874901.35940HepG2ETF1
SNAI3-AS1ENSG00000260630.278.58350140.96390-0.843003.465902.52850HepG2EWSR1
SNAI3-AS1ENSG00000260630.2114.40340185.56530-0.697802.066001.46420HepG2FXR1
SNAI3-AS1ENSG00000260630.2352.68830172.072201.035303.503402.75830HepG2G3BP1
SNAI3-AS1ENSG00000260630.2189.6324044.433402.0934013.8117012.48720HepG2GPKOW
SNAI3-AS1ENSG00000260630.262.12440137.71080-1.148405.040803.76190HepG2HDGF
SNAI3-AS1ENSG00000260630.2125.1494042.885601.545006.803505.85710HepG2HNRNPA1
SNAI3-AS1ENSG00000260630.2119.8435047.696801.329104.977404.06720HepG2HNRNPC
SNAI3-AS1ENSG00000260630.2116.1676055.705901.060202.710902.00080HepG2HNRNPF
SNAI3-AS1ENSG00000260630.264.43220174.39480-1.436506.852805.79270HepG2HNRNPK
SNAI3-AS1ENSG00000260630.2225.7393042.403702.4123020.2633018.80440HepG2HNRNPLL
SNAI3-AS1ENSG00000260630.2116.4337047.381901.297006.094405.22490HepG2HNRNPU
SNAI3-AS1ENSG00000260630.2117.9810054.851501.104902.011501.38710HepG2IGF2BP1
SNAI3-AS1ENSG00000260630.2304.90980174.883800.801904.682903.82480HepG2IGF2BP2
SNAI3-AS1ENSG00000260630.2143.1348067.606401.082004.161903.13790HepG2LARP4
SNAI3-AS1ENSG00000260630.2484.41090185.630701.3837014.7589013.30050HepG2MAGOH
SNAI3-AS1ENSG00000260630.2100.4242043.249001.215303.369702.29260HepG2MTPAP
SNAI3-AS1ENSG00000260630.290.4155037.599901.265703.675802.81490HepG2NSUN2
SNAI3-AS1ENSG00000260630.2112.4686056.470400.993904.122903.19900HepG2PRPF4
SNAI3-AS1ENSG00000260630.2240.96480135.684200.828504.982404.29290HepG2PTBP1
SNAI3-AS1ENSG00000260630.2118.6233066.684600.830903.076102.45340HepG2PUF60
SNAI3-AS1ENSG00000260630.2340.07650146.897201.211009.053708.04580HepG2PUS1
SNAI3-AS1ENSG00000260630.2248.83380146.962000.759604.202103.45520HepG2QKI
SNAI3-AS1ENSG00000260630.254.3178096.20720-0.824702.612901.77720HepG2RBM15
SNAI3-AS1ENSG00000260630.2255.31400133.372700.936705.994505.03700HepG2RBM25
SNAI3-AS1ENSG00000260630.2138.7339042.634801.702108.316106.75460HepG2RPS10
SNAI3-AS1ENSG00000260630.2129.2212037.381201.789408.332306.96850HepG2RPS3A
SNAI3-AS1ENSG00000260630.216.2309047.22430-1.540802.778201.99030HepG2RRP9
SNAI3-AS1ENSG00000260630.2116.2961037.960501.615103.704002.08780HepG2SF1
SNAI3-AS1ENSG00000260630.263.44040150.55250-1.246805.791704.79400HepG2SF3A3
SNAI3-AS1ENSG00000260630.2125.4573063.958400.971904.558903.69340HepG2SLBP
SNAI3-AS1ENSG00000260630.256.43280122.38590-1.116804.729304.12500HepG2SRFBP1
SNAI3-AS1ENSG00000260630.2106.1682065.852000.689002.369801.78480HepG2SRSF5
SNAI3-AS1ENSG00000260630.255.82190119.96000-1.103705.053604.34890HepG2SRSF9
SNAI3-AS1ENSG00000260630.2448.12990106.263302.0762039.7616038.35420HepG2SSB
SNAI3-AS1ENSG00000260630.2138.9119068.094401.028502.908301.64310HepG2STAU1
SNAI3-AS1ENSG00000260630.2236.8994061.602701.9431012.8094011.53240HepG2SUPV3L1
SNAI3-AS1ENSG00000260630.290.8590041.333801.136203.387002.59440HepG2TARDBP
SNAI3-AS1ENSG00000260630.2250.6334046.061102.4439026.6619025.40590HepG2TIAL1
SNAI3-AS1ENSG00000260630.278.3430046.450600.754001.953101.46330HepG2TRIM56
SNAI3-AS1ENSG00000260630.2155.1662056.411401.459705.880704.38060HepG2UPF2
SNAI3-AS1ENSG00000260630.295.2417033.482601.508105.616304.05460HepG2XPO5
SNAI3-AS1ENSG00000260630.2111.1668060.641100.874302.369101.69330HepG2XRN2
SNAI3-AS1ENSG00000260630.2118.2657055.721301.085604.767803.92590HepG2ZC3H8
SNAI3-AS1ENSG00000260630.242.6926082.04250-0.942402.485001.94180K562AGGF1
SNAI3-AS1ENSG00000260630.245.8676085.36860-0.896202.414801.80400K562AKAP8L
SNAI3-AS1ENSG00000260630.266.46950112.75850-0.762502.632801.99510K562DDX47
SNAI3-AS1ENSG00000260630.218.1600045.07090-1.311402.553301.78770K562EIF3G
SNAI3-AS1ENSG00000260630.2114.6298061.305000.902803.193002.31460K562EIF4A3
SNAI3-AS1ENSG00000260630.222.6953051.63620-1.186001.902701.32890K562G3BP2
SNAI3-AS1ENSG00000260630.2130.0223080.163700.697602.088801.36570K562PCBP3
SNAI3-AS1ENSG00000260630.2110.0433061.484100.839702.752301.95330K562POLR2G
SNAI3-AS1ENSG00000260630.220.8743055.98130-1.423202.892202.12670K562PRPF8
SNAI3-AS1ENSG00000260630.290.68730161.92190-0.836302.284401.54330K562PUF60
SNAI3-AS1ENSG00000260630.236.1528082.49090-1.190103.503402.84930K562RBM15
SNAI3-AS1ENSG00000260630.221.6734075.69920-1.804404.258302.62760K562SNRNP200
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNAI3-AS1 is not available on ENCORE database.





1 RBPs can affect the splicing of SNAI3-AS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RISNAI3-AS1ENSG00000260630.2chr16+887400118874157288740011887401678874146288741572-0.540000.000090.02818excludedHepG2DKC1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNAI3-AS1 is not avaliable on ENCORE database.