SMIM13

General Information

Gene Name       : SMIM13
Gene ID             : ENSG00000224531.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMIM13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMIM13ENSG00000224531.53.533.293.41ENCSR000AEF
HepG2SMIM13ENSG00000224531.54.117.565.83ENCSR985KAT
K562SMIM13ENSG00000224531.510.4610.2110.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMIM13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMIM13 RNA is bound by 5 proteins.  







eCLIP assay for SMIM13 is not avaliable on ENCORE database.





5 proteins are bound to SMIM13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr61113864811138796+3'-UTR4.200734.77152K562IGF2BP1
chr61113777911137824+3'-UTR4.232363.11728K562FAM120A
chr61113617311136235+3'-UTR3.976126.12308K562PUM2
chr61113514311135200+3'-UTR5.901276.46573K562PUM2
chr61113874711138919+3'-UTR5.2859352.02704K562PUM2
chr61109437711094579+5'-UTR,CDS3.560496.67587HepG2DDX3X
chr61109458611094679+CDS,intron-Proximal3.747235.73990HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMIM13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMIM13 is not available on ENCORE database.

  • 102 RBPs can affect the levels of SMIM13.  








The Knockdown/knockout RNA-Seq assay for SMIM13 is not available on ENCORE database.





102 RBPs can affect the gene expression of SMIM13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMIM13ENSG00000224531.4354.59720242.992400.545202.423401.54230HepG2ABCF1
SMIM13ENSG00000224531.4493.20730297.132900.731007.426306.52900HepG2ACO1
SMIM13ENSG00000224531.4417.81130269.868700.630504.198702.99840HepG2ADAR
SMIM13ENSG00000224531.4741.75390460.039100.689104.974604.28770HepG2AKAP1
SMIM13ENSG00000224531.4525.26810298.610300.814708.484307.23260HepG2AKAP8L
SMIM13ENSG00000224531.4548.48810380.651200.526903.286602.43010HepG2ASCC1
SMIM13ENSG00000224531.4853.95240542.411600.654709.169808.04000HepG2AUH
SMIM13ENSG00000224531.4259.05120410.35180-0.663602.651101.73560HepG2BCCIP
SMIM13ENSG00000224531.4619.64100356.625000.796907.227505.85570HepG2BCLAF1
SMIM13ENSG00000224531.4367.60420277.393400.406101.986701.47190HepG2BOP1
SMIM13ENSG00000224531.4118.51580182.05810-0.619302.516501.34220HepG2BUD13
SMIM13ENSG00000224531.4583.12060427.753100.446902.742702.10220HepG2CELF1
SMIM13ENSG00000224531.4371.00440460.03880-0.310302.054801.40240HepG2DAZAP1
SMIM13ENSG00000224531.4522.84440264.043800.9855010.381409.16060HepG2DDX21
SMIM13ENSG00000224531.4817.04300440.698700.890509.135408.05450HepG2DDX3X
SMIM13ENSG00000224531.4478.20810289.193800.725503.440002.35220HepG2DDX59
SMIM13ENSG00000224531.4373.44430242.629300.622003.855102.66930HepG2DDX5
SMIM13ENSG00000224531.4676.69050378.531600.838007.042706.09540HepG2DDX6
SMIM13ENSG00000224531.4143.38660269.32610-0.909407.815306.79050HepG2DNAJC2
SMIM13ENSG00000224531.4371.23130184.333001.009908.733906.80930HepG2EIF2S2
SMIM13ENSG00000224531.4256.79450175.144400.552002.335501.49870HepG2EIF3D
SMIM13ENSG00000224531.4379.99310249.465100.607004.259802.95390HepG2EIF3G
SMIM13ENSG00000224531.4692.81060391.566000.823105.720504.75480HepG2EIF4B
SMIM13ENSG00000224531.4589.77810453.771000.378102.556901.74670HepG2EIF4G1
SMIM13ENSG00000224531.41188.53520622.737200.9324021.7971020.38590HepG2ETF1
SMIM13ENSG00000224531.4380.41780251.717500.595703.972502.63760HepG2FASTKD2
SMIM13ENSG00000224531.4750.09920376.422000.9946010.727409.46070HepG2G3BP1
SMIM13ENSG00000224531.4558.25820399.582600.482302.948502.02760HepG2G3BP2
SMIM13ENSG00000224531.4549.05210321.859000.770405.104303.71440HepG2GNB2L1
SMIM13ENSG00000224531.4444.90640298.742900.574503.472201.34260HepG2GRWD1
SMIM13ENSG00000224531.4513.73670336.268900.611303.270601.78300HepG2HNRNPA0
SMIM13ENSG00000224531.4179.73930274.36260-0.610203.058102.38230HepG2HNRNPA1
SMIM13ENSG00000224531.4210.47360305.16650-0.536002.563801.89440HepG2HNRNPC
SMIM13ENSG00000224531.4175.48420275.51830-0.650803.074202.41490HepG2HNRNPLL
SMIM13ENSG00000224531.4143.62510234.97110-0.710202.909601.62970HepG2KRR1
SMIM13ENSG00000224531.4595.47330373.764600.671804.297503.25690HepG2LARP4
SMIM13ENSG00000224531.4533.14600405.892100.393301.991601.43080HepG2MAGOH
SMIM13ENSG00000224531.4316.14890198.584800.670703.968703.00380HepG2MSI2
SMIM13ENSG00000224531.41066.42220417.794701.3518020.5091018.88880HepG2NCBP2
SMIM13ENSG00000224531.4417.53550222.842000.905805.931103.83420HepG2NKRF
SMIM13ENSG00000224531.4579.62290363.820000.671802.929202.01480HepG2PABPC1
SMIM13ENSG00000224531.4196.58950300.08030-0.610203.761302.79150HepG2PARN
SMIM13ENSG00000224531.4691.73330338.790501.0297017.8260016.50100HepG2PCBP1
SMIM13ENSG00000224531.4515.84340311.386000.728105.951304.81690HepG2PRPF8
SMIM13ENSG00000224531.4893.73770344.715501.3743033.5003032.02620HepG2PTBP1
SMIM13ENSG00000224531.4320.77580435.42490-0.440902.779102.18130HepG2PUF60
SMIM13ENSG00000224531.4328.74120461.87300-0.490503.619302.85730HepG2PUM2
SMIM13ENSG00000224531.4662.98690302.663501.1312015.6599014.40480HepG2PUS1
SMIM13ENSG00000224531.4698.10170373.370600.9027011.7805010.62420HepG2QKI
SMIM13ENSG00000224531.4601.72170286.908101.068406.839205.75620HepG2RAVER1
SMIM13ENSG00000224531.4885.95750520.498100.7672011.8413010.92380HepG2RBM22
SMIM13ENSG00000224531.4524.77350383.649000.451803.299402.71900HepG2NELFE
SMIM13ENSG00000224531.4115.58470170.44610-0.560402.107701.56400HepG2RPS19
SMIM13ENSG00000224531.4186.06990269.97480-0.537003.143002.46520HepG2SAFB2
SMIM13ENSG00000224531.4297.08780171.033000.796504.807903.58310HepG2SERBP1
SMIM13ENSG00000224531.4494.40170295.802900.740904.608803.72630HepG2SF3A3
SMIM13ENSG00000224531.4571.72520272.720701.0678011.8751010.50800HepG2SF3B1
SMIM13ENSG00000224531.4633.06330358.922900.8186010.369309.33440HepG2SF3B4
SMIM13ENSG00000224531.4239.05700314.84730-0.397302.306401.71090HepG2SMN1
SMIM13ENSG00000224531.4486.74680292.402100.735104.664103.38920HepG2SMNDC1
SMIM13ENSG00000224531.4432.43370303.445300.510902.063401.39290HepG2SNRNP70
SMIM13ENSG00000224531.41790.63320587.892201.6067076.0139074.31240HepG2SRFBP1
SMIM13ENSG00000224531.4489.24950374.625800.385002.400401.95150HepG2SRSF1
SMIM13ENSG00000224531.4575.92610293.414300.972807.649105.90800HepG2SRSF3
SMIM13ENSG00000224531.4579.80020429.880000.431503.326002.65080HepG2SRSF5
SMIM13ENSG00000224531.4847.06020304.767601.4747023.0402021.73260HepG2SRSF9
SMIM13ENSG00000224531.4497.48450347.301000.518402.348701.34770HepG2STIP1
SMIM13ENSG00000224531.4445.09400268.115600.731203.808902.38950HepG2SUB1
SMIM13ENSG00000224531.482.62430165.68430-1.003805.054303.80140HepG2SUPT6H
SMIM13ENSG00000224531.4836.47710401.657601.0583012.1336010.88590HepG2SUPV3L1
SMIM13ENSG00000224531.4496.52680336.694700.560303.401202.78960HepG2TAF15
SMIM13ENSG00000224531.4392.66790268.490000.548303.176302.40520HepG2TARDBP
SMIM13ENSG00000224531.4171.01170269.24760-0.654802.436201.49330HepG2TFIP11
SMIM13ENSG00000224531.4424.20990209.895101.015008.326207.23530HepG2U2AF1
SMIM13ENSG00000224531.4499.55560282.087600.824404.798503.12270HepG2XRCC5
SMIM13ENSG00000224531.4230.92800395.38640-0.775803.402102.60300HepG2XRN2
SMIM13ENSG00000224531.4482.30400202.884601.2492019.8071018.30040HepG2ZC3H8
SMIM13ENSG00000224531.4477.48410288.515200.726708.565207.73890HepG2ZNF622
SMIM13ENSG00000224531.4818.434401032.62340-0.335402.490801.87090K562AKAP8L
SMIM13ENSG00000224531.4899.560201083.43700-0.268302.360601.52350K562ATP5C1
SMIM13ENSG00000224531.4724.578601162.47310-0.682008.212806.13180K562CIRBP
SMIM13ENSG00000224531.4337.19940502.67400-0.576002.823102.03320K562CPSF6
SMIM13ENSG00000224531.4530.10500690.08680-0.380503.014401.74970K562DDX21
SMIM13ENSG00000224531.4558.76680771.69590-0.465804.091302.79230K562DDX3X
SMIM13ENSG00000224531.4772.786401002.40460-0.375304.018303.25230K562DDX47
SMIM13ENSG00000224531.4654.02750943.62680-0.528906.325305.14000K562EIF3G
SMIM13ENSG00000224531.4586.05360806.21460-0.460103.774602.82000K562EIF4A3
SMIM13ENSG00000224531.4489.57800726.02360-0.568504.638103.07380K562EIF4B
SMIM13ENSG00000224531.4464.26860718.99740-0.631005.776004.52060K562FIP1L1
SMIM13ENSG00000224531.41170.60190813.746200.524503.546602.72340K562G3BP2
SMIM13ENSG00000224531.4934.218001287.92320-0.463203.659302.79410K562GRSF1
SMIM13ENSG00000224531.4506.59970843.83760-0.736109.375507.52990K562HNRNPA1
SMIM13ENSG00000224531.4294.91240527.44040-0.838707.899306.93920K562HNRNPC
SMIM13ENSG00000224531.4317.90260470.92180-0.566903.895202.51530K562HNRNPF
SMIM13ENSG00000224531.4675.83670905.90690-0.422703.631302.39750K562HNRNPL
SMIM13ENSG00000224531.4828.254101103.06950-0.413403.603602.20320K562IGF2BP3
SMIM13ENSG00000224531.4226.65400409.75070-0.854305.142103.81850K562KRR1
SMIM13ENSG00000224531.4934.153401227.71370-0.394203.696102.62000K562MBNL1
SMIM13ENSG00000224531.4578.58050780.49740-0.431905.128904.15740K562NSUN2
SMIM13ENSG00000224531.4501.67970816.22400-0.702207.280205.82460K562PPIG
SMIM13ENSG00000224531.4909.85600716.485600.344602.218301.54290K562PRPF8
SMIM13ENSG00000224531.4800.71350997.82920-0.317502.595502.01890K562RBM15
SMIM13ENSG00000224531.4738.828001062.06940-0.523605.096603.91610K562RBM22
SMIM13ENSG00000224531.4700.87090929.35060-0.407104.854702.76830K562RPS10
SMIM13ENSG00000224531.4279.59920729.89120-1.3843017.2371015.18590K562RPS19
SMIM13ENSG00000224531.4601.73680770.19110-0.356102.963302.12170K562SF3A3
SMIM13ENSG00000224531.4576.55590966.68890-0.7456010.667707.66240K562SLTM
SMIM13ENSG00000224531.4504.35500715.36780-0.504203.671901.75670K562SRP68
SMIM13ENSG00000224531.4494.72560789.08100-0.6735010.058408.39320K562SRPK2
SMIM13ENSG00000224531.4461.64910615.77960-0.415603.337002.04270K562SRSF7
SMIM13ENSG00000224531.4409.262101098.81920-1.4249027.3163024.63380K562TARDBP
SMIM13ENSG00000224531.4339.32330632.40170-0.898208.766905.96950K562TFIP11
SMIM13ENSG00000224531.4679.386301059.91880-0.641608.149006.63510K562TIA1
SMIM13ENSG00000224531.4306.01340454.84740-0.571803.389202.34840K562TIAL1
SMIM13ENSG00000224531.4329.40070483.09210-0.552503.801102.65770K562TRIM56
SMIM13ENSG00000224531.4461.26120697.97250-0.597604.595103.03750K562UTP3
SMIM13ENSG00000224531.4449.75880708.13060-0.654906.820405.40860K562WDR3
SMIM13ENSG00000224531.4546.05540747.60310-0.453202.976501.70740K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMIM13 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SMIM13 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SMIM13 is not avaliable on ENCORE database.