SMARCD1

General Information

Gene Name       : SMARCD1
Gene ID             : ENSG00000066117.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SMARCD1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMARCD1ENSG00000066117.1460.7562.9161.83ENCSR000AEF
HepG2SMARCD1ENSG00000066117.1458.2461.7259.98ENCSR985KAT
K562SMARCD1ENSG00000066117.1461.8261.6761.75ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMARCD1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • SMARCD1 RNA is bound by 28 proteins.  







eCLIP assay for SMARCD1 is not avaliable on ENCORE database.





28 proteins are bound to SMARCD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125049383850493872+3'-UTR5.6560513.44647K562YBX3
chr125049308150493155+3'-UTR,intron-Distal4.849146.52213HepG2UPF1
chr125049326250493302+3'-UTR,intron-Proximal3.786457.13548K562UPF1
chr125049300150493053+3'-UTR,intron-Distal,intron-Proximal3.545274.51787HepG2AKAP1
chr125049360450493657+3'-UTR,intron-Distal3.180403.57974K562IGF2BP1
chr125049415750494297+3'-UTR3.7575311.16034K562FAM120A
chr125049415950494281+3'-UTR3.0994719.19654K562UPF1
chr125049419250494264+3'-UTR4.788995.93974HepG2UPF1
chr125049359550493677+3'-UTR,intron-Distal5.8955927.96859K562UPF1
chr125049344050493531+3'-UTR,intron-Distal,intron-Proximal5.239968.73200HepG2UPF1
chr125049410250494252+3'-UTR3.775818.07504HepG2HNRNPK
chr125049327050493320+3'-UTR4.6800011.15355HepG2PCBP2
chr125049352050493595+3'-UTR,intron-Distal,intron-Proximal5.8510926.18636K562UPF1
chr125049416150494295+3'-UTR3.6082826.23831K562PABPC4
chr125049416350494276+3'-UTR3.1440410.86758K562DDX55
chr125049395250494033+3'-UTR4.1111410.93151HepG2UPF1
chr125049344250493514+3'-UTR,intron-Distal,intron-Proximal5.2632710.74347K562PCBP1
chr125049343250493528+3'-UTR,intron-Distal,intron-Proximal5.6249311.59236HepG2AKAP1
chr125049394750494044+3'-UTR3.9560915.85642K562FAM120A
chr125049436250494412+3'-UTR3.620087.19915K562UPF1
chr125049294850492980+3'-UTR,intron-Proximal5.291209.67229HepG2PCBP2
chr125049395850494030+3'-UTR3.469366.94994HepG2AKAP1
chr125049380350493838+3'-UTR,intron-Proximal4.1506311.45100K562YBX3
chr125049298050493000+3'-UTR,intron-Proximal6.0009017.74444HepG2PCBP2
chr125049382950493893+3'-UTR,intron-Proximal3.423825.59934K562FAM120A
chr125049343750493520+3'-UTR,intron-Distal,intron-Proximal3.9503215.97298K562UPF1
chr125049332050493398+3'-UTR,intron-Proximal4.039697.35773HepG2UPF1
chr125049361650493653+3'-UTR,intron-Distal3.274804.50192K562FAM120A
chr125049392450494047+3'-UTR3.940609.56704K562IGF2BP1
chr125049420250494271+3'-UTR3.184303.03634HepG2PABPN1
chr125049372050493752+3'-UTR,intron-Distal,intron-Proximal3.860463.07786HepG2UPF1
chr125049370950493764+3'-UTR,intron-Distal,intron-Proximal3.567927.19915K562UPF1
chr125049417950494237+3'-UTR4.9917417.98347HepG2PCBP2
chr125049280550492918+3'-UTR3.804156.62597HepG2GRWD1
chr125049381450493879+3'-UTR,intron-Proximal3.953476.68057HepG2PCBP2
chr125049348450493626+3'-UTR,intron-Distal,intron-Proximal4.426946.71790K562AKAP1
chr125049352450493599+3'-UTR,intron-Distal,intron-Proximal3.174235.57214K562IGF2BP2
chr125049296450493041+3'-UTR,intron-Distal,intron-Proximal3.125585.57214K562IGF2BP2
chr125049352850493613+3'-UTR,intron-Distal,intron-Proximal4.502554.40113HepG2AKAP1
chr125049395650494006+3'-UTR4.560863.12485K562AKAP1
chr125049306950493144+3'-UTR,intron-Distal3.000644.39043HepG2AKAP1
chr125049353950493583+3'-UTR,intron-Distal,intron-Proximal4.937835.38606K562FAM120A
chr125049300050493053+3'-UTR,intron-Distal,intron-Proximal5.5068227.76742HepG2PCBP2
chr125049296450493030+3'-UTR,intron-Distal,intron-Proximal3.063453.41981K562HNRNPK
chr125049392350494022+3'-UTR3.5307519.98197K562UPF1
chr125049306550493141+3'-UTR,intron-Distal3.187273.54552HepG2LARP4
chr125049324750493270+3'-UTR,intron-Proximal4.091195.96194HepG2PCBP2
chr125049411850494178+3'-UTR3.669125.74223HepG2PCBP2
chr125047902750479072+5'-UTR5.521716.02643HepG2DDX3X
chr125047954350479611+5'-UTR,intron-Distal4.408214.79286HepG2PRPF4
chr125047943250479563+5'-UTR,intron-Distal4.424545.79294K562GTF2F1
chr125047942450479515+5'-UTR,intron-Distal,intron-Proximal3.500984.74378HepG2GTF2F1
chr125047945450479522+5'-UTR,intron-Distal5.037815.02942K562EFTUD2
chr125047907250479115+5'-UTR4.219326.15796HepG2DDX3X
chr125047938550479505+5'-UTR,intron-Distal,intron-Proximal4.8577011.73878HepG2FAM120A
chr125047944750479526+5'-UTR,intron-Distal5.6269213.38060HepG2EFTUD2
chr125047944150479538+5'-UTR,intron-Distal3.873603.63902HepG2CSTF2T
chr125047952750479585+5'-UTR,intron-Distal5.711886.82887HepG2EFTUD2
chr125047940250479504+5'-UTR,intron-Distal,intron-Proximal5.277939.47372HepG2PRPF4
chr125047912550479322+5'-UTR,CDS3.368364.96025HepG2SRSF1
chr125047917850479248+CDS3.891523.48722HepG2PRPF4
chr125049244850492517+CDS,intron-Proximal5.323597.23718K562AQR
chr125048376550483813+CDS,intron-Proximal4.673335.35117HepG2PRPF8
chr125048036150480444+CDS,intron-Proximal4.068585.75388HepG2BUD13
chr125049245850492535+CDS,intron-Proximal3.561454.97821K562BUD13
chr125048053850480565+CDS,intron-Proximal3.953163.16051HepG2PPIG
chr125049073150490799+CDS,intron-Distal,intron-Proximal3.574295.05395HepG2PRPF8
chr125048237950482457+CDS,intron-Distal,intron-Proximal4.8093315.17624HepG2PRPF8
chr125048054650480666+CDS,intron-Proximal3.120825.10726K562UCHL5
chr125048362850483713+CDS,intron-Proximal4.417244.62947HepG2AQR
chr125048228950482336+CDS,intron-Distal,intron-Proximal3.362894.65237HepG2U2AF2
chr125047915250479295+CDS4.7267011.11007HepG2DDX3X
chr125048036050480443+CDS,intron-Proximal4.561999.25403HepG2AQR
chr125048400450484097+CDS,intron-Proximal3.111685.24728HepG2U2AF2
chr125048064250480704+CDS,intron-Proximal3.666329.86827HepG2PRPF8
chr125048053950480600+CDS3.277703.79741HepG2GRWD1
chr125048361950483712+CDS,intron-Proximal4.5869010.14692HepG2SF3B4
chr125049065650490737+CDS,intron-Distal3.359804.24070HepG2GRWD1
chr125049074750490808+CDS,intron-Distal,intron-Proximal4.401033.59236HepG2AQR
chr125048242650482485+intron-Distal,intron-Proximal4.614143.49003K562PRPF8
chr125048091050480980+intron-Distal3.002333.02792HepG2RBFOX2
chr125049075550490817+intron-Distal,intron-Proximal5.012856.22530K562AQR
chr125049082050490891+intron-Distal,intron-Proximal3.473853.52230K562AQR
chr125049092750491007+intron-Distal3.618603.79442K562AQR
chr125048016550480211+intron-Proximal4.996515.27173HepG2PRPF8
chr125048016450480223+intron-Proximal4.464705.98353HepG2EFTUD2
chr125049244950492495+intron-Proximal4.304485.01214HepG2BUD13
chr125048016650480224+intron-Proximal4.528216.06456HepG2BUD13
chr125048437350484418+intron-Proximal3.973855.47926K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMARCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMARCD1 is not available on ENCORE database.

  • 70 RBPs can affect the levels of SMARCD1.  








The Knockdown/knockout RNA-Seq assay for SMARCD1 is not available on ENCORE database.





70 RBPs can affect the gene expression of SMARCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMARCD1ENSG00000066117.101649.632901330.422200.310202.422401.41550HepG2AATF
SMARCD1ENSG00000066117.102267.304601578.873000.5220012.6280011.53070HepG2ACO1
SMARCD1ENSG00000066117.101121.183401537.61940-0.455704.083202.89770HepG2ADAR
SMARCD1ENSG00000066117.101144.446401586.07420-0.470807.091105.92590HepG2AKAP8L
SMARCD1ENSG00000066117.101185.184501518.32280-0.357402.495301.74620HepG2ASCC1
SMARCD1ENSG00000066117.101073.752101424.81040-0.408102.870101.95380HepG2BCLAF1
SMARCD1ENSG00000066117.102087.853201465.845700.510205.843005.01200HepG2BOP1
SMARCD1ENSG00000066117.102182.590201442.519200.597406.705005.53460HepG2CIRBP
SMARCD1ENSG00000066117.101851.454001578.269100.230202.635001.98190HepG2CKAP4
SMARCD1ENSG00000066117.101896.257802198.14520-0.213102.082401.51120HepG2CELF1
SMARCD1ENSG00000066117.101441.038002363.45430-0.7138024.6836022.88700HepG2DAZAP1
SMARCD1ENSG00000066117.101985.457601579.021700.330303.938502.57510HepG2DDX1
SMARCD1ENSG00000066117.102105.224301612.306100.384702.464001.72970HepG2DDX55
SMARCD1ENSG00000066117.101231.095101647.77410-0.420603.647202.49250HepG2DDX5
SMARCD1ENSG00000066117.10876.406701548.33230-0.8210018.4010016.75260HepG2DNAJC21
SMARCD1ENSG00000066117.10958.804701451.56900-0.598305.716004.88170HepG2EIF2S1
SMARCD1ENSG00000066117.101910.392701463.741400.384103.920502.53330HepG2EIF2S2
SMARCD1ENSG00000066117.101781.844701177.598700.597406.555905.21100HepG2EIF3D
SMARCD1ENSG00000066117.101453.884702233.67380-0.619507.865606.52290HepG2EIF4G2
SMARCD1ENSG00000066117.101892.997801542.609600.295202.566701.76270HepG2EWSR1
SMARCD1ENSG00000066117.102587.994201948.515400.409403.044402.24060HepG2FIP1L1
SMARCD1ENSG00000066117.102091.932401618.645800.369902.827702.12740HepG2FXR1
SMARCD1ENSG00000066117.101512.296101048.512500.528305.085603.86660HepG2GEMIN5
SMARCD1ENSG00000066117.101068.173701457.14470-0.448003.672602.49350HepG2GNB2L1
SMARCD1ENSG00000066117.102143.210502438.61380-0.186302.200901.55580HepG2HNRNPF
SMARCD1ENSG00000066117.101913.460802152.89820-0.170101.966101.38590HepG2HNRNPL
SMARCD1ENSG00000066117.101056.777401344.30610-0.347203.068102.06820HepG2HNRNPM
SMARCD1ENSG00000066117.101155.694301727.22000-0.5797012.3840011.17770HepG2HNRNPU
SMARCD1ENSG00000066117.101908.703501526.142400.322602.289601.66870HepG2IGF2BP2
SMARCD1ENSG00000066117.10688.994701290.81280-0.9057012.9171011.42110HepG2NSUN2
SMARCD1ENSG00000066117.101228.945801540.54540-0.326003.654502.81930HepG2PPIL4
SMARCD1ENSG00000066117.10720.064401850.97910-1.3621054.5382052.09510HepG2PRPF4
SMARCD1ENSG00000066117.102274.703001594.881100.5121010.819209.87370HepG2PTBP1
SMARCD1ENSG00000066117.101859.757902237.19780-0.266602.129601.59740HepG2PUF60
SMARCD1ENSG00000066117.102754.320802374.913900.213703.430902.78500HepG2PUM1
SMARCD1ENSG00000066117.101869.079002373.16070-0.344503.903603.10960HepG2PUM2
SMARCD1ENSG00000066117.102501.070001608.146400.6370017.7764016.45820HepG2PUS1
SMARCD1ENSG00000066117.103443.020402345.175600.5539012.6315011.68650HepG2RBM22
SMARCD1ENSG00000066117.102073.409301774.957300.224102.307101.80370HepG2NELFE
SMARCD1ENSG00000066117.101952.569801653.117400.240102.682202.07390HepG2RECQL
SMARCD1ENSG00000066117.101428.899701145.817300.318402.757802.14350HepG2RPS19
SMARCD1ENSG00000066117.101752.765901230.165900.510704.032703.10540HepG2RRP9
SMARCD1ENSG00000066117.101261.309901538.17650-0.286303.714702.98740HepG2SAFB2
SMARCD1ENSG00000066117.10639.590901150.06650-0.8465010.565308.77940HepG2SERBP1
SMARCD1ENSG00000066117.102382.836601786.250800.415602.379401.75550HepG2SF3A3
SMARCD1ENSG00000066117.101175.322101440.80660-0.293802.119001.49560HepG2SF3B1
SMARCD1ENSG00000066117.101696.408802145.18470-0.338605.955904.98890HepG2SLBP
SMARCD1ENSG00000066117.104720.932002648.793700.8336039.7432038.42060HepG2SRFBP1
SMARCD1ENSG00000066117.102934.797401733.189300.7597025.7037024.58100HepG2SRSF1
SMARCD1ENSG00000066117.101316.264401693.31550-0.363405.379504.64370HepG2TRIM56
SMARCD1ENSG00000066117.10638.05750948.07910-0.571305.052404.02110HepG2UCHL5
SMARCD1ENSG00000066117.101268.198501584.12860-0.320904.410703.56390HepG2UPF1
SMARCD1ENSG00000066117.102749.656901529.418100.8462028.3811026.76970HepG2UTP3
SMARCD1ENSG00000066117.101484.243601826.68820-0.299504.542603.71660HepG2ZC3H8
SMARCD1ENSG00000066117.101983.707901742.242100.187202.312101.79880HepG2ZNF622
SMARCD1ENSG00000066117.102118.416402988.96640-0.496705.806504.03280K562ABCF1
SMARCD1ENSG00000066117.102670.139702160.934700.305204.814604.10070K562AGGF1
SMARCD1ENSG00000066117.101400.873901735.42870-0.309004.060902.88160K562BCLAF1
SMARCD1ENSG00000066117.101096.450601316.58170-0.264002.246101.31360K562CSTF2
SMARCD1ENSG00000066117.103496.017102603.076100.425408.989707.89840K562DDX47
SMARCD1ENSG00000066117.102125.938402495.03430-0.231002.536401.84220K562EIF2S2
SMARCD1ENSG00000066117.101716.601501180.279000.540302.922501.88660K562EIF3A
SMARCD1ENSG00000066117.102640.791201726.517400.613006.209604.57160K562EIF3D
SMARCD1ENSG00000066117.101762.389901248.884100.496807.742606.41430K562EIF3G
SMARCD1ENSG00000066117.102008.836801362.559600.5599010.606609.50750K562FXR1
SMARCD1ENSG00000066117.10930.721701209.58360-0.378102.073701.47370K562G3BP2
SMARCD1ENSG00000066117.102440.889403324.79490-0.445905.849304.74570K562GRSF1
SMARCD1ENSG00000066117.101754.377902299.71820-0.390505.133803.90370K562HNRNPU
SMARCD1ENSG00000066117.103206.395202673.215500.262302.385901.55040K562MBNL1
SMARCD1ENSG00000066117.101891.273802399.24430-0.343207.819706.65230K562NSUN2
SMARCD1ENSG00000066117.102164.812701427.531200.600602.586101.63690K562PABPN1
SMARCD1ENSG00000066117.101567.537402335.91630-0.575505.987604.75990K562PCBP3
SMARCD1ENSG00000066117.101248.394501791.71590-0.521307.223205.94280K562POLR2G
SMARCD1ENSG00000066117.103056.598102229.906400.454805.346004.62300K562PUS1
SMARCD1ENSG00000066117.101949.904601596.498300.288402.408701.40230K562SAFB
SMARCD1ENSG00000066117.10553.783101342.74130-1.2778014.5913011.46230K562SERBP1
SMARCD1ENSG00000066117.102093.753301513.387000.468203.388502.61120K562SRSF1
SMARCD1ENSG00000066117.102507.096801797.153700.480207.087605.75680K562SYNCRIP
SMARCD1ENSG00000066117.101272.089401607.95830-0.338002.366301.43240K562UCHL5
SMARCD1ENSG00000066117.103022.499002263.546800.417109.691208.21320K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMARCD1 is not available on ENCORE database.





18 RBPs can affect the splicing of SMARCD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMARCD1ENSG00000066117.10chr12+504811455048126850480538504806615048230350482420-0.243000.000000.00000excludedK562SRSF1
SESMARCD1ENSG00000066117.10chr12+5048114550481268504805385048066150482303504824200.110000.004390.06695includedK562SF3B4
SESMARCD1ENSG00000066117.10chr12+504906325049075550488288504883555049249650492598-0.122000.000120.00684excludedK562PRPF8
SESMARCD1ENSG00000066117.10chr12+504906325049075550488288504883555049249650492598-0.099000.006770.09582excludedHepG2U2AF1
SESMARCD1ENSG00000066117.10chr12+504811455048126850480538504806615048230350482420-0.234000.000000.00011excludedHepG2U2AF1
SESMARCD1ENSG00000066117.10chr12+504811455048126850480538504806615048230350482420-0.214000.000050.00792excludedHepG2PRPF8
SESMARCD1ENSG00000066117.10chr12+504906325049075550488219504883555049249650492598-0.106000.001230.08923excludedK562XRCC6
SESMARCD1ENSG00000066117.10chr12+5049358250493683504932695049334850493836504941010.668000.000070.00285includedHepG2HNRNPK
SESMARCD1ENSG00000066117.10chr12+504906325049075550488288504883555049249650492598-0.173000.000650.00971excludedHepG2U2AF2
SESMARCD1ENSG00000066117.10chr12+5049097850491120504905975049075550492496504925980.057000.000000.00000includedK562AQR
SESMARCD1ENSG00000066117.10chr12+504906325049075550488171504883555049249650492598-0.106000.000010.00024excludedK562AQR
SESMARCD1ENSG00000066117.10chr12+504823035048242050480538504806615048366650483768-0.113000.001210.08374excludedK562SUPV3L1
SESMARCD1ENSG00000066117.10chr12+504811455048126850480538504806615048230350482420-0.099000.000370.00737excludedK562PUS1
SESMARCD1ENSG00000066117.10chr12+504811455048126850480538504806615048230350482420-0.196000.000010.00233excludedHepG2PCBP2
SESMARCD1ENSG00000066117.10chr12+504811455048126850480538504806615048230350482420-0.171000.000070.01357excludedHepG2LARP4
SESMARCD1ENSG00000066117.10chr12+504811455048126850480538504806615048230350482420-0.303000.000000.00000excludedHepG2SRSF1
SESMARCD1ENSG00000066117.10chr12+504906325049075550488171504883555049249650492598-0.089000.000660.02210excludedHepG2SF3A3
SESMARCD1ENSG00000066117.10chr12+504811455048126850480538504806615048230350482420-0.165000.000030.00748excludedHepG2SSB
SESMARCD1ENSG00000066117.10chr12+5049358250493683504932695049334850493836504941010.464000.000510.02248includedK562HNRNPU
SESMARCD1ENSG00000066117.10chr12+504823035048242050480538504806615048366650483768-0.072000.003580.09830excludedK562HNRNPU
SESMARCD1ENSG00000066117.10chr12+5049358250493683504932695049334850493836504941010.508000.000270.01707includedK562HNRNPK
SESMARCD1ENSG00000066117.10chr12+5049354150493683504932125049334850493836504941010.375000.000720.03331includedHepG2HNRNPU
SESMARCD1ENSG00000066117.10chr12+504823035048242050480538504806615048366650483768-0.243000.000000.00012excludedHepG2HNRNPU
SESMARCD1ENSG00000066117.10chr12+504935825049368350493269504933485049383650494101-0.168000.001340.02455excludedK562HNRNPC
A3SSSMARCD1ENSG00000066117.10chr12+5048038750480446504804035048044650479943504801310.092000.000000.00001longerK562AQR
A5SSSMARCD1ENSG00000066117.10chr12+5048230350482507504823035048242050483666504837680.069000.000000.00059longerHepG2RBM22
MXESMARCD1ENSG00000066117.10chr12+50482303504824205048366650483768504805385048066150484023504841850.146000.000780.016161includedK562SRSF1
MXESMARCD1ENSG00000066117.10chr12+50482303504824205048366650483768504805385048066150484023504841850.072000.001100.051961includedK562SAFB
MXESMARCD1ENSG00000066117.10chr12+50482303504824205048362250483768504805385048066150484023504841850.072000.001130.052751includedK562SAFB
MXESMARCD1ENSG00000066117.10chr12+50482303504824205048366650483768504805385048066150484023504841850.081000.000040.005791includedHepG2LARP4
MXESMARCD1ENSG00000066117.10chr12+5048427550484373504882195048835550484023504841855049249650492598-0.119000.002130.040952includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMARCD1 is not avaliable on ENCORE database.