SF3A1

General Information

Gene Name : SF3A1
Gene ID : ENSG00000099995.18
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SF3A1)

Not Available

Antibody Validation

Bethyl Labs: A301-601A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SF3A1	ENSG00000099995.18	28.22	53.69	40.95	ENCSR000AEF
HepG2	SF3A1	ENSG00000099995.18	47.67	25.47	36.57	ENCSR985KAT
K562	SF3A1	ENSG00000099995.18	81.81	77.74	79.78	ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
eCLIP	eCLIP: 4117	ENCSR317QOX	SF3A1	HepG2	Released	ENCAB549NKF	ENCSR618TKA
knockdown followed by RNA-seq	SF3A1-BGKcLV17-K562	ENCSR547ICR	SF3A1	K562	Released		ENCSR516TLX	CRISPR	KD% = 76.8,77.378703
knockdown followed by RNA-seq	SF3A1-BGHcLV18-HepG2	ENCSR556TJU	SF3A1	HepG2	Released		ENCSR670KAS	CRISPR	KD% = 96.2,93.3

eCLIP

RBP	Exp_UID	Cell_Line	ENCODE_ACCESSION	Control_ENCODE_ACCESSION	ENCODE_Antibody_ID	Antibody	Lot_num	Status	Project
SF3A1	4117	HepG2	ENCSR317QOX	ENCSR618TKA	ENCAB549NKF	A301-601A	1	Released	ENCODE4

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SF3A1	ENCAB549NKF	A301-601A	1			Released, ENCODE4	BGHcLV18-43, Released, ENCODE4	BGKcLV17-45, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
SF3A1	K562	CRISPR	ENCSR547ICR	ENCSR516TLX	SF3A1-BGKcLV17-45,SF3A1-BGKcLV17-46	NT-BGKcLV17-1,NT-BGKcLV17-2	76.8,77.378703	Released	ENCODE4
SF3A1	HepG2	CRISPR	ENCSR556TJU	ENCSR670KAS	SF3A1-BGHcLV18-43,SF3A1-BGHcLV18-44	NT-BGHcLV18-1,NT-BGHcLV18-2	96.2,93.3	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SF3A1	Product_ID: A301-601A Lot_ID: 1 Source: Bethyl Labs Target Name: SF3A1-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SF3A1 is not avaliable on ENCORE database.

Proteins bound to RNA

SF3A1 RNA is bound by 24 proteins.

eCLIP assay for SF3A1 is not avaliable on ENCORE database.

24 proteins are bound to SF3A1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	30738188	30738330	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.29312	7.36517	K562	DDX24
chr22	30738291	30738338	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.19884	9.89473	K562	UCHL5
chr22	30729835	30730005	-	3'-UTR,intron-Distal	4.32976	18.09052	K562	FAM120A
chr22	30734776	30734855	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.31005	14.67529	K562	IGF2BP2
chr22	30729807	30729903	-	3'-UTR,intron-Distal	5.40348	7.35154	K562	UPF1
chr22	30734889	30734979	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.43074	6.50797	HepG2	G3BP1
chr22	30738246	30738340	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.21889	21.50090	K562	ZNF622
chr22	30728873	30728913	-	3'-UTR,intron-Distal	4.25717	3.87930	K562	UPF1
chr22	30730162	30730195	-	3'-UTR,intron-Distal	4.75572	28.70287	K562	YBX3
chr22	30738261	30738338	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.49614	5.41876	K562	PUM1
chr22	30734855	30734927	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.13942	4.23668	K562	LIN28B
chr22	30730082	30730164	-	3'-UTR,intron-Distal	4.56577	7.83850	HepG2	SUB1
chr22	30733776	30733859	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.34180	11.45503	K562	IGF2BP2
chr22	30733756	30733800	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.55344	3.55142	K562	METAP2
chr22	30738244	30738340	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.40806	7.51172	HepG2	PPIG
chr22	30738259	30738337	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.16530	5.07457	HepG2	BCLAF1
chr22	30730220	30730366	-	3'-UTR,intron-Distal	3.10186	6.74715	K562	IGF2BP1
chr22	30734911	30735007	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.46097	12.26691	K562	ZNF622
chr22	30730485	30730567	-	3'-UTR,intron-Distal	4.70136	14.18762	K562	PCBP1
chr22	30738809	30738846	-	3'-UTR,CDS,intron-Distal	3.94578	7.80648	K562	YBX3
chr22	30738848	30738868	-	3'-UTR,CDS,intron-Distal	5.40629	11.31254	K562	YBX3
chr22	30735007	30735024	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.75599	10.48558	K562	ZNF622
chr22	30738824	30738885	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.15831	4.75425	K562	EFTUD2
chr22	30738188	30738342	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14634	12.03943	K562	ZNF800
chr22	30730244	30730316	-	3'-UTR,intron-Distal	3.86297	6.31152	K562	IGF2BP2
chr22	30730195	30730219	-	3'-UTR,intron-Distal	4.15912	10.81363	K562	YBX3
chr22	30734902	30735026	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.56512	13.94298	K562	UCHL5
chr22	30730110	30730162	-	3'-UTR,intron-Distal	4.54284	15.65055	K562	YBX3
chr22	30752736	30752816	-	5'-UTR,CDS,intron-Distal	3.57599	4.47117	K562	DDX3X
chr22	30752814	30752868	-	5'-UTR,intron-Distal	3.41192	9.30098	K562	YBX3
chr22	30752814	30752892	-	5'-UTR,intron-Distal,intron-Proximal	3.79950	6.81630	K562	FMR1
chr22	30752816	30752898	-	5'-UTR,intron-Distal,intron-Proximal	4.21425	4.84938	K562	DDX3X
chr22	30752731	30752797	-	5'-UTR,CDS,intron-Distal	3.46915	4.31813	HepG2	G3BP1
chr22	30742416	30742496	-	CDS,intron-Distal,intron-Proximal	3.24985	9.81338	K562	YBX3
chr22	30733104	30733169	-	CDS,intron-Distal	3.74788	10.60713	K562	YBX3
chr22	30742400	30742416	-	CDS,intron-Distal	3.03313	10.73248	K562	YBX3
chr22	30735129	30735216	-	CDS,intron-Distal,intron-Proximal	3.39402	12.80038	K562	ZNF622
chr22	30736687	30736725	-	CDS,intron-Distal	3.69768	4.06757	K562	UCHL5
chr22	30738200	30738291	-	CDS,intron-Distal,intron-Proximal	3.96316	21.96277	K562	UCHL5
chr22	30748942	30748978	-	CDS,intron-Distal	3.19426	5.54400	K562	YBX3
chr22	30736687	30736776	-	CDS,intron-Distal,intron-Proximal	3.52894	7.11962	HepG2	G3BP1
chr22	30735118	30735198	-	CDS,intron-Distal,intron-Proximal	3.60658	6.25351	HepG2	G3BP1
chr22	30740909	30740989	-	CDS,intron-Distal,intron-Proximal	4.27278	4.72880	HepG2	GRWD1
chr22	30737844	30737875	-	CDS,intron-Distal,intron-Proximal	3.28786	3.47314	HepG2	G3BP1
chr22	30736749	30736802	-	CDS,intron-Distal,intron-Proximal	5.18146	10.25943	K562	LIN28B
chr22	30741008	30741079	-	CDS,intron-Distal,intron-Proximal	3.16726	6.03207	K562	FMR1
chr22	30736327	30736367	-	CDS,intron-Distal	4.21186	4.42709	HepG2	G3BP1
chr22	30742319	30742505	-	CDS,intron-Distal,intron-Proximal	3.01646	6.84360	K562	PUM1
chr22	30737694	30737795	-	CDS,intron-Distal	3.96159	12.89449	HepG2	G3BP1
chr22	30733675	30733693	-	CDS,intron-Distal,intron-Proximal	4.98021	3.92758	K562	PCBP1
chr22	30748943	30748991	-	CDS,intron-Distal	3.73569	3.45590	K562	GRWD1
chr22	30733018	30733057	-	CDS,intron-Distal	4.67403	5.86954	K562	UCHL5
chr22	30735118	30735129	-	CDS,intron-Distal,intron-Proximal	4.37408	8.85033	K562	ZNF622
chr22	30733016	30733123	-	CDS,intron-Distal	3.32537	8.24916	K562	FAM120A
chr22	30736725	30736795	-	CDS,intron-Distal,intron-Proximal	3.13110	5.17653	K562	UCHL5
chr22	30740857	30740925	-	CDS,intron-Distal,intron-Proximal	3.78003	7.56654	HepG2	PRPF8
chr22	30736329	30736357	-	CDS,intron-Distal	3.61736	3.12941	K562	UCHL5
chr22	30738188	30738231	-	CDS,intron-Distal,intron-Proximal	3.42760	6.57537	HepG2	G3BP1
chr22	30733702	30733776	-	CDS,intron-Distal,intron-Proximal	3.63479	11.55294	K562	IGF2BP2
chr22	30740921	30740956	-	CDS,intron-Distal,intron-Proximal	3.75162	12.74366	K562	YBX3
chr22	30737680	30737755	-	CDS,intron-Distal,intron-Proximal	5.80999	17.11009	K562	LIN28B
chr22	30736636	30736692	-	CDS,intron-Distal,intron-Proximal	5.77856	6.75320	K562	AQR
chr22	30733062	30733114	-	CDS,intron-Distal	4.75806	6.88889	HepG2	G3BP1
chr22	30737692	30737792	-	CDS,intron-Distal	3.15650	13.31533	K562	UCHL5
chr22	30742300	30742370	-	CDS,intron-Distal,intron-Proximal	3.46915	4.31813	HepG2	G3BP1
chr22	30735118	30735184	-	CDS,intron-Distal,intron-Proximal	4.07497	5.35382	K562	ZNF800
chr22	30736210	30736262	-	CDS,intron-Distal	4.26096	3.35417	K562	METAP2
chr22	30737654	30737684	-	CDS,intron-Distal,intron-Proximal	3.08240	6.02419	K562	AQR
chr22	30738231	30738286	-	CDS,intron-Distal,intron-Proximal	4.15325	8.24268	HepG2	G3BP1
chr22	30733014	30733062	-	CDS,intron-Distal,intron-Proximal	4.35348	4.96722	HepG2	G3BP1
chr22	30733087	30733171	-	CDS,intron-Distal,intron-Proximal	4.70394	12.33972	K562	PCBP1
chr22	30733114	30733162	-	CDS,intron-Distal	3.36592	3.77614	HepG2	G3BP1
chr22	30735102	30735256	-	CDS,intron-Distal,intron-Proximal	3.85155	4.57180	HepG2	AQR
chr22	30733613	30733680	-	CDS,intron-Distal,intron-Proximal	3.85944	10.78170	K562	AQR
chr22	30736219	30736271	-	CDS,intron-Distal	4.11390	3.68241	HepG2	G3BP1
chr22	30748978	30748995	-	CDS,intron-Distal	4.19289	4.51688	K562	YBX3
chr22	30738503	30738578	-	intron-Distal,intron-Proximal	3.88223	3.58455	K562	U2AF2
chr22	30742257	30742282	-	intron-Distal,intron-Proximal	4.73482	4.86944	K562	AQR
chr22	30740914	30740921	-	intron-Distal,intron-Proximal	3.58240	4.98672	K562	AQR
chr22	30740895	30740914	-	intron-Distal,intron-Proximal	4.16736	5.63763	K562	AQR
chr22	30738519	30738581	-	intron-Distal,intron-Proximal	3.56661	5.76944	HepG2	U2AF2
chr22	30737636	30737654	-	intron-Distal,intron-Proximal	5.36059	7.81430	K562	AQR
chr22	30736142	30736185	-	intron-Distal,intron-Proximal	3.94234	4.89208	K562	AQR
chr22	30738145	30738187	-	intron-Distal,intron-Proximal	4.26838	4.49024	K562	AQR
chr22	30740878	30740895	-	intron-Distal,intron-Proximal	5.24759	6.44303	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SF3A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SF3A1 is not available on ENCORE database.
78 RBPs can affect the levels of SF3A1.

The Knockdown/knockout RNA-Seq assay for SF3A1 is not available on ENCORE database.

78 RBPs can affect the gene expression of SF3A1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SF3A1	ENSG00000099995.14	2070.51540	1744.22660	0.24730	3.29080	2.63730	HepG2	ACO1
SF3A1	ENSG00000099995.14	2919.46090	1858.33740	0.65160	6.59260	5.81110	HepG2	AKAP1
SF3A1	ENSG00000099995.14	1061.21100	1409.66590	-0.40960	2.64550	1.76470	HepG2	BCLAF1
SF3A1	ENSG00000099995.14	2599.53310	3818.59240	-0.55480	6.84930	5.95560	HepG2	BOP1
SF3A1	ENSG00000099995.14	1632.68920	2039.73010	-0.32110	3.10430	2.29090	HepG2	CALR
SF3A1	ENSG00000099995.14	2021.58830	1460.79980	0.46860	4.28110	3.33320	HepG2	CIRBP
SF3A1	ENSG00000099995.14	2587.02970	3505.74530	-0.43840	3.98730	3.17550	HepG2	CPSF6
SF3A1	ENSG00000099995.14	986.80820	1403.79830	-0.50850	7.36050	5.71870	HepG2	YBX3
SF3A1	ENSG00000099995.14	2573.45800	2184.28250	0.23640	2.86290	2.21150	HepG2	CELF1
SF3A1	ENSG00000099995.14	1889.46680	1613.10780	0.22800	2.90020	2.04800	HepG2	DDX19B
SF3A1	ENSG00000099995.14	886.43350	1208.37920	-0.44700	3.07430	1.60150	HepG2	DDX28
SF3A1	ENSG00000099995.14	2102.13850	1458.45140	0.52730	5.40720	4.15600	HepG2	EEF2
SF3A1	ENSG00000099995.14	908.60290	1338.26150	-0.55860	4.15370	2.78220	HepG2	AGO1
SF3A1	ENSG00000099995.14	2600.62010	2029.94440	0.35730	3.93170	2.54360	HepG2	EIF2S2
SF3A1	ENSG00000099995.14	1458.29960	1991.49570	-0.44960	3.73140	1.67850	HepG2	EIF3H
SF3A1	ENSG00000099995.14	2377.36250	1624.25230	0.54950	4.88210	4.03670	HepG2	EIF4A3
SF3A1	ENSG00000099995.14	1778.68380	2317.05680	-0.38150	6.01050	4.86180	HepG2	EIF4G1
SF3A1	ENSG00000099995.14	1381.11810	2219.56660	-0.68440	9.35430	7.89280	HepG2	EIF4G2
SF3A1	ENSG00000099995.14	1677.56380	1215.58100	0.46460	2.47300	1.72960	HepG2	FUBP3
SF3A1	ENSG00000099995.14	2049.61380	1639.31020	0.32220	2.21510	1.59330	HepG2	FXR1
SF3A1	ENSG00000099995.14	1338.95660	1054.10090	0.34500	2.44980	1.61110	HepG2	GEMIN5
SF3A1	ENSG00000099995.14	2783.28830	3974.22550	-0.51390	4.99260	4.14890	HepG2	GPKOW
SF3A1	ENSG00000099995.14	1608.73690	2158.39520	-0.42400	6.94860	5.58440	HepG2	HNRNPA2B1
SF3A1	ENSG00000099995.14	2210.13000	1540.20020	0.52090	5.76560	4.78580	HepG2	HNRNPK
SF3A1	ENSG00000099995.14	1811.47220	2139.23040	-0.23990	3.35240	2.61670	HepG2	HNRNPL
SF3A1	ENSG00000099995.14	3018.94030	3792.65940	-0.32920	2.67300	2.05220	HepG2	HNRNPLL
SF3A1	ENSG00000099995.14	1900.48410	1537.69240	0.30550	4.18430	3.45150	HepG2	HNRNPU
SF3A1	ENSG00000099995.14	811.81690	1302.57540	-0.68210	4.96930	3.17720	HepG2	ILF3
SF3A1	ENSG00000099995.14	2038.54720	1639.88480	0.31380	2.08010	1.50820	HepG2	MAGOH
SF3A1	ENSG00000099995.14	2355.78860	3867.60410	-0.71520	6.19870	4.71540	HepG2	MTPAP
SF3A1	ENSG00000099995.14	1781.84210	2328.75140	-0.38620	4.97410	3.95570	HepG2	NOL12
SF3A1	ENSG00000099995.14	2607.86360	3362.77990	-0.36680	2.98260	2.20620	HepG2	NSUN2
SF3A1	ENSG00000099995.14	1852.65000	1573.64330	0.23540	1.97450	1.44800	HepG2	PCBP1
SF3A1	ENSG00000099995.14	1868.27580	1601.34040	0.22230	2.11410	1.62370	HepG2	PTBP1
SF3A1	ENSG00000099995.14	1272.13960	1734.07920	-0.44690	5.68310	4.83460	HepG2	QKI
SF3A1	ENSG00000099995.14	1697.58410	1152.02800	0.55920	7.31690	6.37400	HepG2	RPS19
SF3A1	ENSG00000099995.14	2688.68700	3754.09330	-0.48160	5.83820	4.84670	HepG2	SF3B1
SF3A1	ENSG00000099995.14	1845.55120	1596.92550	0.20870	2.65390	2.02070	HepG2	SMN1
SF3A1	ENSG00000099995.14	2720.54610	4177.04780	-0.61860	4.51240	3.50410	HepG2	SNRNP70
SF3A1	ENSG00000099995.14	3332.10640	2674.13110	0.31730	5.15700	4.53230	HepG2	SRFBP1
SF3A1	ENSG00000099995.14	2395.45400	1740.08460	0.46100	10.03740	9.26220	HepG2	SRSF1
SF3A1	ENSG00000099995.14	1187.76030	1587.83550	-0.41880	2.72520	2.05220	HepG2	SUPV3L1
SF3A1	ENSG00000099995.14	1290.32810	1564.25790	-0.27770	2.47130	1.93780	HepG2	TAF15
SF3A1	ENSG00000099995.14	2682.88600	3696.16460	-0.46220	2.14600	1.49560	HepG2	TARDBP
SF3A1	ENSG00000099995.14	834.82170	1064.29290	-0.35040	2.20850	1.30690	HepG2	TFIP11
SF3A1	ENSG00000099995.14	1784.07970	1494.14090	0.25580	2.36400	1.89510	HepG2	TIAL1
SF3A1	ENSG00000099995.14	2933.30060	2311.46380	0.34360	2.81780	2.18400	HepG2	U2AF1
SF3A1	ENSG00000099995.14	677.00200	938.00850	-0.47040	3.40670	2.56890	HepG2	UCHL5
SF3A1	ENSG00000099995.14	1748.78090	2240.96470	-0.35780	6.29430	5.31090	HepG2	UPF1
SF3A1	ENSG00000099995.14	1059.35260	1454.06820	-0.45690	2.43820	1.49990	HepG2	UPF2
SF3A1	ENSG00000099995.14	2545.62050	2163.56140	0.23450	3.13470	2.50390	HepG2	UTP3
SF3A1	ENSG00000099995.14	8165.73110	5104.09640	0.67780	28.41730	26.69400	K562	AGGF1
SF3A1	ENSG00000099995.14	6744.13130	5608.66090	0.26590	2.44180	1.52820	K562	AKAP8
SF3A1	ENSG00000099995.14	7046.79160	5311.05120	0.40790	2.83580	2.17430	K562	AKAP8L
SF3A1	ENSG00000099995.14	4460.47820	5714.29910	-0.35740	4.75080	3.72750	K562	CPSF6
SF3A1	ENSG00000099995.14	7411.47060	6598.11600	0.16760	2.06520	1.48850	K562	DDX47
SF3A1	ENSG00000099995.14	4215.61650	3177.63790	0.40770	4.03220	2.37650	K562	DHX30
SF3A1	ENSG00000099995.14	7189.75970	5715.02440	0.33110	5.93520	4.58340	K562	DKC1
SF3A1	ENSG00000099995.14	3957.32520	4524.46120	-0.19320	2.23030	1.57390	K562	EIF2S2
SF3A1	ENSG00000099995.14	3892.69580	2886.92270	0.43110	2.46610	1.52150	K562	EIF3A
SF3A1	ENSG00000099995.14	2571.97420	2026.24660	0.34400	4.96570	3.91560	K562	EIF3G
SF3A1	ENSG00000099995.14	1408.67230	2147.01810	-0.60800	3.25830	2.48030	K562	G3BP2
SF3A1	ENSG00000099995.14	4223.79220	6028.95810	-0.51340	8.66400	7.30670	K562	GRSF1
SF3A1	ENSG00000099995.14	3504.86030	2805.93580	0.32080	2.53040	1.35510	K562	HNRNPK
SF3A1	ENSG00000099995.14	4703.16700	7076.24600	-0.58940	4.59540	3.57560	K562	HSPD1
SF3A1	ENSG00000099995.14	3639.17580	2810.77500	0.37250	2.63250	1.64050	K562	IGF2BP2
SF3A1	ENSG00000099995.14	3474.61190	2858.49470	0.28150	2.41860	1.32550	K562	IGF2BP3
SF3A1	ENSG00000099995.14	6910.78360	5636.32640	0.29400	3.37860	2.45660	K562	KIF1C
SF3A1	ENSG00000099995.14	6739.80480	5395.37260	0.32090	2.31350	1.35960	K562	MAK16
SF3A1	ENSG00000099995.14	8002.64340	6314.11290	0.34180	4.29090	3.11460	K562	MBNL1
SF3A1	ENSG00000099995.14	6707.83420	4571.59480	0.55300	2.42540	1.51210	K562	PABPN1
SF3A1	ENSG00000099995.14	3839.55360	2886.98460	0.41130	5.62380	3.62890	K562	PCBP1
SF3A1	ENSG00000099995.14	5277.65810	6571.30660	-0.31630	2.41980	1.64350	K562	PCBP3
SF3A1	ENSG00000099995.14	3956.85690	5040.18770	-0.34910	2.03660	1.34970	K562	POLR2G
SF3A1	ENSG00000099995.14	8694.58890	5267.05220	0.72300	4.07370	3.43390	K562	PUS1
SF3A1	ENSG00000099995.14	7568.92450	5131.99300	0.56050	10.75160	9.60580	K562	RBM15
SF3A1	ENSG00000099995.14	3570.16440	2932.59210	0.28370	2.95920	1.93260	K562	RCC2
SF3A1	ENSG00000099995.14	2865.56750	5907.23600	-1.04370	47.54880	44.82310	K562	SF3A3
SF3A1	ENSG00000099995.14	8113.22780	4801.37010	0.75670	3.74670	2.23560	K562	SNRNP200
SF3A1	ENSG00000099995.14	3385.58490	2779.98810	0.28420	2.45370	1.50160	K562	SRFBP1
SF3A1	ENSG00000099995.14	3391.66700	2812.72360	0.26990	2.65890	1.96500	K562	SRSF1
SF3A1	ENSG00000099995.14	3280.73490	2745.73830	0.25670	2.38900	1.63570	K562	TIA1
SF3A1	ENSG00000099995.14	3399.64450	2695.01510	0.33500	3.10580	1.93740	K562	TRA2A
SF3A1	ENSG00000099995.14	4395.99290	3284.36080	0.42050	5.17860	3.78330	K562	TRIM56
SF3A1	ENSG00000099995.14	2681.24190	3368.91890	-0.32940	2.75410	1.73800	K562	UCHL5
SF3A1	ENSG00000099995.14	5457.39780	6348.03670	-0.21810	2.96790	2.22260	K562	UPF1
SF3A1	ENSG00000099995.14	4234.39360	6055.11650	-0.51600	5.36550	3.69550	K562	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SF3A1 is not available on ENCORE database.

1 RBPs can affect the splicing of SF3A1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A3SS	SF3A1	ENSG00000099995.14	chr22	-	30733014	30733227			30733014	30733169	30733678	30733886	0.20400	0.00000	0.00000	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SF3A1

General Information

Functions

Localization

Domains (AlphaFold: SF3A1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SF3A1 is not avaliable on ENCORE database.

24 proteins are bound to SF3A1 RNA:

eCLIP assay for SF3A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SF3A1 is not available on ENCORE database.

78 RBPs can affect the gene expression of SF3A1 :

The Knockdown/knockout RNA-Seq assay for SF3A1 is not available on ENCORE database.

1 RBPs can affect the splicing of SF3A1 :

The Knockdown/knockout RNA-Seq assay for SF3A1 is not avaliable on ENCORE database.