SDCCAG3

General Information

Gene Name       : SDCCAG3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SDCCAG3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SDCCAG3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SDCCAG3 RNA is bound by 24 proteins.  







eCLIP assay for SDCCAG3 is not avaliable on ENCORE database.





24 proteins are bound to SDCCAG3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9139296769139296866-3'-UTR,intron-Distal,intron-Proximal4.197703.55598HepG2ZC3H11A
chr9139296671139296767-3'-UTR,intron-Distal4.851306.92568HepG2PABPN1
chr9139297220139297268-3'-UTR,CDS,intron-Distal3.029383.18660HepG2PABPN1
chr9139296767139296877-3'-UTR,intron-Distal,intron-Proximal5.6098711.41516HepG2PABPN1
chr9139296508139296625-3'-UTR,intron-Distal3.603113.07801K562UPF1
chr9139296493139296550-3'-UTR,intron-Distal4.112113.72506HepG2PABPN1
chr9139304906139304961-5'-UTR,intron-Distal3.976898.97789HepG2EFTUD2
chr9139304892139304954-5'-UTR,intron-Distal5.374699.70042K562GEMIN5
chr9139304810139304877-5'-UTR,CDS,intron-Distal,intron-Proximal3.612598.75653HepG2DDX3X
chr9139304877139304968-5'-UTR,intron-Distal4.3115312.55615HepG2DDX3X
chr9139302280139302382-CDS,intron-Distal,intron-Proximal3.8925610.84088HepG2GRWD1
chr9139299529139299566-CDS,intron-Distal,intron-Proximal3.706255.31044HepG2PRPF8
chr9139299653139299707-CDS,intron-Distal,intron-Proximal4.159486.10653K562SF3B4
chr9139301550139301624-CDS,intron-Distal,intron-Proximal3.4255011.69715HepG2PRPF8
chr9139300417139300486-CDS,intron-Distal,intron-Proximal3.5360210.41659HepG2SF3A3
chr9139302286139302360-CDS,intron-Distal,intron-Proximal4.2707011.55292HepG2PPIG
chr9139301722139301775-CDS,intron-Distal,intron-Proximal3.491663.78791K562RBM15
chr9139299085139299136-CDS,intron-Distal3.653367.10944HepG2PPIG
chr9139302276139302332-CDS,intron-Distal,intron-Proximal3.689885.03335K562UCHL5
chr9139301876139301927-CDS,intron-Distal3.348397.60977HepG2PPIG
chr9139300418139300494-CDS,intron-Distal,intron-Proximal5.610008.74981HepG2SF3B4
chr9139304503139304553-CDS,intron-Distal,intron-Proximal3.291215.34140HepG2PRPF8
chr9139301718139301775-CDS,intron-Distal,intron-Proximal3.2859511.60771HepG2U2AF2
chr9139301946139302012-CDS,intron-Distal3.111163.70975K562UCHL5
chr9139301732139301774-CDS,intron-Distal,intron-Proximal3.017744.67011HepG2RBM15
chr9139301796139301865-CDS,intron-Distal3.012854.09398HepG2GRWD1
chr9139297333139297389-CDS,intron-Distal3.994943.82050HepG2SF3B4
chr9139304723139304785-CDS,intron-Distal,intron-Proximal4.516818.77485HepG2PRPF8
chr9139300393139300482-CDS,intron-Distal,intron-Proximal3.213957.42133K562SF3B4
chr9139301974139302006-CDS,intron-Distal3.152283.80299HepG2GRWD1
chr9139301951139301974-CDS,intron-Distal3.846563.31827HepG2GRWD1
chr9139297650139297740-intron-Distal4.9100221.64954HepG2PCBP2
chr9139299461139299530-intron-Distal,intron-Proximal5.030799.04887HepG2TIA1
chr9139297873139297908-intron-Distal3.986853.19526HepG2CSTF2T
chr9139297875139297926-intron-Distal3.412356.09990HepG2HNRNPK
chr9139297668139297816-intron-Distal5.4627815.36621HepG2DDX59
chr9139303065139303159-intron-Distal3.859453.48722HepG2PRPF4
chr9139297681139297836-intron-Distal3.172274.63914K562HNRNPK
chr9139299432139299525-intron-Distal,intron-Proximal3.5752313.43650K562TIA1
chr9139299222139299310-intron-Distal,intron-Proximal3.232966.68005HepG2PRPF4
chr9139297386139297456-intron-Distal6.9558032.35049HepG2PCBP2
chr9139299242139299309-intron-Distal,intron-Proximal3.0736510.49128HepG2SF3B4
chr9139298451139298507-intron-Distal,intron-Proximal4.734829.46915K562AQR
chr9139297492139297579-intron-Distal3.392894.68303HepG2HNRNPK
chr9139298461139298507-intron-Distal,intron-Proximal4.249335.93840HepG2PRPF8
chr9139299468139299529-intron-Distal,intron-Proximal3.5695910.36120HepG2SF3B4
chr9139299242139299327-intron-Distal,intron-Proximal3.2815212.56975HepG2RBFOX2
chr9139299146139299219-intron-Distal,intron-Proximal3.618016.43894HepG2SF3A3
chr9139299310139299394-intron-Distal,intron-Proximal3.086873.59669HepG2PRPF4
chr9139298382139298453-intron-Distal,intron-Proximal4.653159.23607HepG2EFTUD2
chr9139297875139297913-intron-Distal5.311377.06641HepG2PCBP2
chr9139297880139297915-intron-Distal5.079736.65725HepG2DDX59
chr9139297379139297453-intron-Distal4.161568.28918HepG2CSTF2T
chr9139297645139297712-intron-Distal3.582284.84707HepG2HNRNPK
chr9139299743139299808-intron-Distal,intron-Proximal3.404274.83930HepG2XPO5
chr9139297651139297701-intron-Distal3.125273.27222HepG2CSTF2T
chr9139297740139297811-intron-Distal6.1703413.49443HepG2PCBP2
chr9139297384139297458-intron-Distal3.439396.84506HepG2HNRNPK
chr9139299436139299531-intron-Distal,intron-Proximal3.995826.80053HepG2TIAL1
chr9139297357139297563-intron-Distal4.6224818.71844HepG2DDX59
chr9139297456139297549-intron-Distal6.1761535.51077HepG2PCBP2
chr9139297559139297603-intron-Distal6.0591513.78241HepG2PCBP2
chr9139299419139299464-intron-Distal,intron-Proximal4.110013.18939HepG2RBFOX2
chr9139297712139297809-intron-Distal5.6436011.68724HepG2HNRNPK
chr9139299481139299529-intron-Distal,intron-Proximal3.767787.70737HepG2PRPF8
chr9139298339139298382-intron-Distal5.349315.16714HepG2EFTUD2
chr9139299329139299391-intron-Distal,intron-Proximal3.064353.41531HepG2RBFOX2
chr9139300545139300613-intron-Distal3.178163.25356HepG2DDX59
chr9139298370139298462-intron-Distal,intron-Proximal4.110013.18939HepG2RBFOX2
chr9139303236139303322-intron-Distal3.345453.90917HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SDCCAG3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SDCCAG3 is not available on ENCORE database.

  • 90 RBPs can affect the levels of SDCCAG3.  








The Knockdown/knockout RNA-Seq assay for SDCCAG3 is not available on ENCORE database.





90 RBPs can affect the gene expression of SDCCAG3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SDCCAG3ENSG00000165689.12653.05280885.36290-0.439102.804701.76130HepG2AKAP8
SDCCAG3ENSG00000165689.121267.186901552.63190-0.293103.658102.88820HepG2AUH
SDCCAG3ENSG00000165689.121176.78010798.780400.558903.605102.53600HepG2BCCIP
SDCCAG3ENSG00000165689.12620.08490776.73620-0.325002.137201.45350HepG2CALR
SDCCAG3ENSG00000165689.12959.36780695.122400.464702.161301.49020HepG2CNOT7
SDCCAG3ENSG00000165689.12581.46850811.56440-0.481003.566802.79640HepG2CPSF6
SDCCAG3ENSG00000165689.121272.889001059.346000.264802.564801.94150HepG2CELF1
SDCCAG3ENSG00000165689.12496.18020634.35640-0.354402.258401.44330HepG2DDX24
SDCCAG3ENSG00000165689.12553.28950810.88720-0.551506.750405.78160HepG2DKC1
SDCCAG3ENSG00000165689.12790.74990603.896100.388804.479003.68500HepG2DNAJC2
SDCCAG3ENSG00000165689.12434.36750596.90360-0.458602.354801.33870HepG2AGO1
SDCCAG3ENSG00000165689.12592.79510793.07630-0.419902.619702.04260HepG2EIF2S1
SDCCAG3ENSG00000165689.121095.92740868.912400.334802.967701.75330HepG2EIF2S2
SDCCAG3ENSG00000165689.121504.46460853.425600.817807.201906.12070HepG2EIF4B
SDCCAG3ENSG00000165689.121536.445201782.72130-0.214502.299301.74230HepG2ETF1
SDCCAG3ENSG00000165689.12614.21400919.94130-0.582804.495203.69240HepG2GPKOW
SDCCAG3ENSG00000165689.12890.92680643.517300.469202.439901.39360HepG2GRSF1
SDCCAG3ENSG00000165689.12414.41630615.09310-0.569704.255203.47770HepG2HNRNPA1
SDCCAG3ENSG00000165689.12514.01720684.18400-0.412602.666101.98460HepG2HNRNPC
SDCCAG3ENSG00000165689.121027.749401255.52650-0.288802.839902.11370HepG2HNRNPF
SDCCAG3ENSG00000165689.121292.56280831.007400.637206.925805.85830HepG2HNRNPK
SDCCAG3ENSG00000165689.12566.25080877.91960-0.632605.625304.76090HepG2HNRNPLL
SDCCAG3ENSG00000165689.12560.67350679.66010-0.277702.017901.49020HepG2HNRNPU
SDCCAG3ENSG00000165689.12640.01660963.95750-0.590904.178802.65950HepG2HSPD1
SDCCAG3ENSG00000165689.12991.913401236.34060-0.317802.616601.91230HepG2IGF2BP1
SDCCAG3ENSG00000165689.12837.50480606.936800.464503.233502.00640HepG2LARP7
SDCCAG3ENSG00000165689.121497.42140889.695800.751007.683306.67300HepG2MATR3
SDCCAG3ENSG00000165689.12568.36590895.42990-0.655803.724002.58890HepG2MTPAP
SDCCAG3ENSG00000165689.12591.04510778.46560-0.397402.579001.85550HepG2NSUN2
SDCCAG3ENSG00000165689.121150.71060816.711600.494507.266506.35900HepG2PCBP1
SDCCAG3ENSG00000165689.12394.07600605.65310-0.620004.811403.77820HepG2PRPF8
SDCCAG3ENSG00000165689.12693.74720831.04560-0.260501.910601.43990HepG2PTBP1
SDCCAG3ENSG00000165689.12801.566301078.16260-0.427703.735903.05470HepG2PUF60
SDCCAG3ENSG00000165689.121470.475901144.533600.361405.998205.19330HepG2PUM1
SDCCAG3ENSG00000165689.12527.16480863.29590-0.7116012.2904011.15020HepG2PUS1
SDCCAG3ENSG00000165689.121202.344901490.00590-0.309503.365702.81020HepG2RBM22
SDCCAG3ENSG00000165689.12622.57180816.83430-0.391802.994502.29690HepG2RBM25
SDCCAG3ENSG00000165689.121058.33030731.897700.532003.892802.70030HepG2RBM27
SDCCAG3ENSG00000165689.12785.13740622.428900.334901.857301.34430HepG2RPS19
SDCCAG3ENSG00000165689.12957.98080689.035200.475303.087201.94910HepG2RPS5
SDCCAG3ENSG00000165689.12756.57740605.263400.321802.947502.28770HepG2SAFB2
SDCCAG3ENSG00000165689.12963.81080663.187300.539203.432502.35110HepG2SMNDC1
SDCCAG3ENSG00000165689.12675.50370966.86500-0.517402.694201.92330HepG2SNRNP70
SDCCAG3ENSG00000165689.121197.636201682.87290-0.490709.813309.02720HepG2SRFBP1
SDCCAG3ENSG00000165689.12635.79060903.09580-0.506306.123205.48730HepG2SRSF1
SDCCAG3ENSG00000165689.12705.04060935.04230-0.407302.239201.35090HepG2SRSF3
SDCCAG3ENSG00000165689.121017.267501233.49460-0.278102.676501.99220HepG2SRSF7
SDCCAG3ENSG00000165689.12867.76480734.723500.240001.996301.51310HepG2SRSF9
SDCCAG3ENSG00000165689.12839.906801461.07280-0.7987020.3683019.25570HepG2SSB
SDCCAG3ENSG00000165689.121001.38130607.416300.721105.991804.32270HepG2STIP1
SDCCAG3ENSG00000165689.121568.420301210.667700.373405.947405.09850HepG2SUCLG1
SDCCAG3ENSG00000165689.12398.32640781.79710-0.9728010.415509.24130HepG2SUPV3L1
SDCCAG3ENSG00000165689.12654.50240811.76010-0.310702.369701.84410HepG2TAF15
SDCCAG3ENSG00000165689.12524.22360855.77990-0.707107.226106.12980HepG2TARDBP
SDCCAG3ENSG00000165689.12963.73750666.322000.532307.662706.80160HepG2TRIM56
SDCCAG3ENSG00000165689.121429.386901114.967600.358302.190701.45070HepG2UBE2L3
SDCCAG3ENSG00000165689.12717.09270461.786700.634804.933403.91430HepG2UCHL5
SDCCAG3ENSG00000165689.121559.63520918.676500.7635018.9224017.57150HepG2UTP3
SDCCAG3ENSG00000165689.12538.44800876.44430-0.7029012.2717011.02580HepG2ZC3H8
SDCCAG3ENSG00000165689.12899.703701249.00870-0.473304.827004.11210K562AGGF1
SDCCAG3ENSG00000165689.12976.546701299.63170-0.412303.740902.97850K562AKAP8L
SDCCAG3ENSG00000165689.121526.765702110.10410-0.466803.698503.03980K562AQR
SDCCAG3ENSG00000165689.12695.443701003.72190-0.529404.510803.38650K562BOP1
SDCCAG3ENSG00000165689.12835.817501067.21370-0.352603.003002.18590K562CPSF6
SDCCAG3ENSG00000165689.122952.503502102.887100.4895010.961809.76300K562DDX47
SDCCAG3ENSG00000165689.121125.13770729.815800.624408.822807.40380K562EIF3G
SDCCAG3ENSG00000165689.12824.525001085.92400-0.397303.046002.14470K562FMR1
SDCCAG3ENSG00000165689.12710.01380920.44430-0.374502.317801.48510K562FTO
SDCCAG3ENSG00000165689.12467.79910645.20590-0.463903.748802.15090K562FUS
SDCCAG3ENSG00000165689.121338.04980900.568100.571108.999007.97980K562FXR1
SDCCAG3ENSG00000165689.12398.18030600.40920-0.592503.554102.72920K562G3BP2
SDCCAG3ENSG00000165689.12700.119301018.90190-0.541304.188203.21690K562GPKOW
SDCCAG3ENSG00000165689.122943.284602455.352900.261402.443401.73130K562GRSF1
SDCCAG3ENSG00000165689.12796.030901253.24110-0.654802.795001.56770K562HNRNPA2B1
SDCCAG3ENSG00000165689.12903.976001227.99250-0.441904.299003.57150K562HNRNPC
SDCCAG3ENSG00000165689.121652.290701190.667100.472603.808402.70490K562HNRNPM
SDCCAG3ENSG00000165689.121072.112101379.29870-0.363502.077701.37350K562KIF1C
SDCCAG3ENSG00000165689.121233.06320847.383400.541106.330905.03740K562MAGOH
SDCCAG3ENSG00000165689.121005.360701320.27580-0.393103.164301.99350K562MAK16
SDCCAG3ENSG00000165689.121099.91120845.593300.379303.402102.36430K562MATR3
SDCCAG3ENSG00000165689.122271.720302941.69430-0.372903.516702.24360K562MSI2
SDCCAG3ENSG00000165689.12817.206801083.03530-0.406302.270001.49020K562NAA15
SDCCAG3ENSG00000165689.121631.294501941.36680-0.251103.957803.08460K562NSUN2
SDCCAG3ENSG00000165689.12605.407701096.63570-0.857104.385903.06440K562PABPN1
SDCCAG3ENSG00000165689.121030.626401609.45500-0.643106.632405.34100K562PCBP3
SDCCAG3ENSG00000165689.12862.453001234.45580-0.517406.135204.94790K562POLR2G
SDCCAG3ENSG00000165689.12616.396601289.01000-1.0643016.4441015.15960K562PUS1
SDCCAG3ENSG00000165689.121072.428901255.83670-0.227801.816401.31800K562RBM15
SDCCAG3ENSG00000165689.12402.99360569.54150-0.499003.579602.04210K562RBM25
SDCCAG3ENSG00000165689.121228.21590957.943000.358502.138401.42470K562RPS19
SDCCAG3ENSG00000165689.12908.31290511.717900.827703.549402.40230K562RPS3
SDCCAG3ENSG00000165689.121451.919101100.090000.400203.796302.52060K562SAFB
SDCCAG3ENSG00000165689.121707.178201962.61230-0.201202.375801.50030K562SRPK2
SDCCAG3ENSG00000165689.12772.820701377.83280-0.834203.940502.11360K562SUPT6H
SDCCAG3ENSG00000165689.12361.64080589.37650-0.704603.332001.66990K562TAF15
SDCCAG3ENSG00000165689.121124.37310816.807300.461003.862403.02060K562TARDBP
SDCCAG3ENSG00000165689.121805.334602241.57370-0.312204.311102.72580K562TROVE2
SDCCAG3ENSG00000165689.121686.405202058.47260-0.287604.058503.20410K562UPF1
SDCCAG3ENSG00000165689.121351.318601761.36970-0.382303.926902.87830K562WDR3
SDCCAG3ENSG00000165689.122156.329401831.622400.235403.139102.24070K562WDR43
SDCCAG3ENSG00000165689.121653.008101066.171200.632603.085101.40500K562XRCC6
SDCCAG3ENSG00000165689.121876.947502377.39010-0.341002.402101.60700K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SDCCAG3 is not available on ENCORE database.





13 RBPs can affect the splicing of SDCCAG3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESDCCAG3ENSG00000165689.12chr9-139303450139303519139302277139302390139304541139304691-0.454000.000000.00000excludedK562SRSF1
SESDCCAG3ENSG00000165689.12chr9-139303450139303519139302277139302390139304541139304691-0.238000.002860.04817excludedK562SF3B4
SESDCCAG3ENSG00000165689.12chr9-139304541139304653139302277139302390139304779139305052-0.206000.003140.07422excludedK562AKAP8L
SESDCCAG3ENSG00000165689.12chr9-1393045411393046911393022771393023901393047791393049790.272000.001530.05492includedK562FXR1
SESDCCAG3ENSG00000165689.12chr9-139303450139303519139302277139302390139304779139305045-0.317000.004290.05539excludedK562PUS1
SESDCCAG3ENSG00000165689.12chr9-139303450139303519139302277139302390139304541139304691-0.306000.005390.09322excludedHepG2SRSF1
SESDCCAG3ENSG00000165689.12chr9-139303450139303519139302277139302390139304541139304691-0.172000.002080.05425excludedHepG2SF3A3
SESDCCAG3ENSG00000165689.12chr9-139303450139303519139302277139302390139304541139304653-0.221000.001640.04939excludedK562UTP18
SESDCCAG3ENSG00000165689.12chr9-1393034501393035191393022771393023901393045411393046910.319000.000790.01646includedK562U2AF2
SESDCCAG3ENSG00000165689.12chr9-1393045411393046911393022771393023901393047791393050610.209000.002490.07524includedK562HNRNPU
SESDCCAG3ENSG00000165689.12chr9-139303450139303519139302277139302390139304541139304691-0.286000.000020.00122excludedK562RBM15
SESDCCAG3ENSG00000165689.12chr9-139303450139303519139302277139302390139304779139305045-0.260000.002660.05804excludedK562AGGF1
SESDCCAG3ENSG00000165689.12chr9-1393045411393046911393022771393023901393047791393049790.277000.000070.00205includedK562HNRNPC
SESDCCAG3ENSG00000165689.12chr9-139303450139303519139302277139302390139304541139304691-0.221000.000010.00034excludedK562HNRNPC
A3SSSDCCAG3ENSG00000165689.12chr9-1393003561393005151393003561393004301393015961393020130.072000.000100.00402longerHepG2U2AF2
A3SSSDCCAG3ENSG00000165689.12chr9-1393003561393004481393003561393004301393015961393020130.169000.000000.00000longerK562AQR
A3SSSDCCAG3ENSG00000165689.12chr9-1392995421392997061392995421392996541393003561393004300.056000.000420.00323longerK562AQR
RISDCCAG3ENSG00000165689.12chr9-1393014681393020131393014681393016791393018051393020130.080000.001610.01348includedHepG2U2AF2
MXESDCCAG3ENSG00000165689.12chr9-1392995691392996541393003561393004301392990821392991451393015961393016370.161000.001630.059091includedK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SDCCAG3 is not avaliable on ENCORE database.