RPS19BP1

General Information

Gene Name       : RPS19BP1
Gene ID             : ENSG00000187051.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RPS19BP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPS19BP1ENSG00000187051.85.5313.849.69ENCSR000AEF
HepG2RPS19BP1ENSG00000187051.845.8416.2531.05ENCSR985KAT
K562RPS19BP1ENSG00000187051.846.7319.5033.11ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RPS19BP1293TshRNARPS19BP1-BG293LV05-81,RPS19BP1-BG293LV05-82NT-BG293LV05-1,NT-BG293LV05-2,SubmittingENCORE2
RPS19BP1293TshRNABG293LV05-83,BG293LV05-84BG293LV05-1,BG293LV05-2NotSatisfiedENCORE2
RPS19BP1293TshRNARPS19BP1-BG293LV06-87B,RPS19BP1-BG293LV06-88BNT-BG293LV06-1B,NT-BG293LV06-2B,SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPS19BP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPS19BP1 RNA is bound by 8 proteins.  







eCLIP assay for RPS19BP1 is not avaliable on ENCORE database.





8 proteins are bound to RPS19BP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223992519739925230-3'-UTR,intron-Distal,intron-Proximal3.509475.42819K562PABPC4
chr223992526139925326-3'-UTR,intron-Distal3.797733.02060K562LIN28B
chr223992526139925326-3'-UTR,intron-Distal4.704098.19301K562PABPC4
chr223992556939925626-3'-UTR,CDS,intron-Distal4.136113.48187K562RBM15
chr223992513139925167-3'-UTR,intron-Distal,intron-Proximal5.886975.71015K562PABPC4
chr223992515739925246-3'-UTR,intron-Distal,intron-Proximal3.464966.32318HepG2SUB1
chr223992533939925454-3'-UTR,intron-Distal,intron-Proximal4.336284.19989HepG2UPF1
chr223992526139925351-3'-UTR,intron-Distal3.105163.57824K562UPF1
chr223992584939925956-3'-UTR,CDS,intron-Distal,intron-Proximal4.322433.44423K562BUD13
chr223992869039928752-5'-UTR,CDS,intron-Distal,intron-Proximal4.7571621.64325HepG2DDX3X
chr223992869139928748-5'-UTR,CDS,intron-Distal,intron-Proximal5.0061510.10446K562DDX3X
chr223992840739928499-CDS,intron-Distal3.8352916.10484K562DDX3X
chr223992849939928529-CDS,intron-Distal,intron-Proximal5.2136012.62211K562DDX3X
chr223992838639928404-CDS,intron-Distal,intron-Proximal3.659253.27405HepG2PRPF8
chr223992848239928530-CDS,intron-Distal,intron-Proximal5.5644814.58841HepG2DDX3X
chr223992835539928386-intron-Distal,intron-Proximal3.730263.86479HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPS19BP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPS19BP1 is not available on ENCORE database.

  • 97 RBPs can affect the levels of RPS19BP1.  








The Knockdown/knockout RNA-Seq assay for RPS19BP1 is not available on ENCORE database.





97 RBPs can affect the gene expression of RPS19BP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPS19BP1ENSG00000187051.4256.15280332.52720-0.376502.062401.38680HepG2AKAP8L
RPS19BP1ENSG00000187051.4287.09170195.644500.553201.909301.40430HepG2BOP1
RPS19BP1ENSG00000187051.4291.62880188.515600.629302.449601.73380HepG2CNOT7
RPS19BP1ENSG00000187051.4164.25970109.482100.585202.255101.33780HepG2YBX3
RPS19BP1ENSG00000187051.4414.96510307.994000.430003.329102.52910HepG2DAZAP1
RPS19BP1ENSG00000187051.4403.05680306.111200.396802.932602.07640HepG2DDX19B
RPS19BP1ENSG00000187051.4679.51800373.640300.862807.902006.89550HepG2DDX3X
RPS19BP1ENSG00000187051.4291.83010197.130900.565902.849801.82370HepG2DDX5
RPS19BP1ENSG00000187051.4525.94640321.069100.711903.332502.66140HepG2DDX6
RPS19BP1ENSG00000187051.4172.95200106.547100.698803.590902.86590HepG2DNAJC2
RPS19BP1ENSG00000187051.4473.83300308.547900.618803.865503.17150HepG2EIF2S1
RPS19BP1ENSG00000187051.4544.71580340.931600.675904.410203.60680HepG2EIF4A3
RPS19BP1ENSG00000187051.4445.67920323.416500.462502.932802.07560HepG2EWSR1
RPS19BP1ENSG00000187051.4180.76990290.74200-0.685603.858102.93840HepG2FUBP3
RPS19BP1ENSG00000187051.4224.39110315.98930-0.493903.190902.14420HepG2HDGF
RPS19BP1ENSG00000187051.4249.38580159.569400.644102.728101.37190HepG2HNRNPA0
RPS19BP1ENSG00000187051.4220.21810120.732300.867004.275403.42750HepG2HNRNPC
RPS19BP1ENSG00000187051.4436.11860323.362700.431502.166901.54320HepG2HNRNPK
RPS19BP1ENSG00000187051.4362.57580280.553700.369902.286001.66500HepG2HNRNPL
RPS19BP1ENSG00000187051.4205.41020119.934600.776204.010703.29180HepG2HNRNPU
RPS19BP1ENSG00000187051.4184.59940122.510500.591402.897202.14850HepG2ILF2
RPS19BP1ENSG00000187051.4441.52640298.214300.566102.844802.00410HepG2LARP4
RPS19BP1ENSG00000187051.4550.37510344.258100.676804.772303.91770HepG2MAGOH
RPS19BP1ENSG00000187051.4599.61070346.160300.792505.955305.05500HepG2MATR3
RPS19BP1ENSG00000187051.4472.07690354.294200.414001.959501.42170HepG2NCBP2
RPS19BP1ENSG00000187051.4436.67150305.407100.515703.285902.45680HepG2NOL12
RPS19BP1ENSG00000187051.4185.90640118.723800.646903.017602.13700HepG2PARN
RPS19BP1ENSG00000187051.4496.13150331.836000.580205.453904.64750HepG2PCBP1
RPS19BP1ENSG00000187051.4182.87680106.973400.773504.034503.16170HepG2PPIL4
RPS19BP1ENSG00000187051.4532.32520309.490900.7823010.693109.68790HepG2PUM1
RPS19BP1ENSG00000187051.4251.80730365.68570-0.538303.301002.62690HepG2QKI
RPS19BP1ENSG00000187051.4782.85070495.911600.658607.666306.90350HepG2RBM22
RPS19BP1ENSG00000187051.4351.49080181.760300.951405.414804.01380HepG2RBM27
RPS19BP1ENSG00000187051.4290.91830147.598600.978804.769903.36940HepG2RCC2
RPS19BP1ENSG00000187051.4333.17840167.609100.991106.249905.07470HepG2RPS2
RPS19BP1ENSG00000187051.4307.61710189.453100.699203.397702.51160HepG2RPS3A
RPS19BP1ENSG00000187051.4283.15500171.116200.726503.261102.08780HepG2RPS5
RPS19BP1ENSG00000187051.4199.64170106.811300.902205.583304.72150HepG2SAFB2
RPS19BP1ENSG00000187051.4590.64580309.704500.931302.573601.92280HepG2SF3A3
RPS19BP1ENSG00000187051.4358.14980279.555400.357302.138701.50820HepG2SLBP
RPS19BP1ENSG00000187051.4224.32160124.567200.848505.645404.77900HepG2SMN1
RPS19BP1ENSG00000187051.4738.09170560.091000.398003.600003.05140HepG2SRFBP1
RPS19BP1ENSG00000187051.4430.63820287.862500.581005.008904.20610HepG2SRSF5
RPS19BP1ENSG00000187051.4216.56510298.52300-0.463002.762302.21090HepG2SRSF9
RPS19BP1ENSG00000187051.4445.17030327.373300.443303.299902.63290HepG2SUCLG1
RPS19BP1ENSG00000187051.4124.84650329.82210-1.4015015.2207014.06260HepG2TAF15
RPS19BP1ENSG00000187051.4205.10430303.05420-0.563203.294402.38640HepG2TIA1
RPS19BP1ENSG00000187051.4290.22850116.565901.315902.816302.31220HepG2TIAL1
RPS19BP1ENSG00000187051.4313.41910117.578901.414406.363805.57160HepG2TRIM56
RPS19BP1ENSG00000187051.4436.12440284.833900.614504.507503.35930HepG2TUFM
RPS19BP1ENSG00000187051.4410.44660213.012300.946207.221906.21300HepG2U2AF1
RPS19BP1ENSG00000187051.4268.66890140.622800.933902.539101.81240HepG2UCHL5
RPS19BP1ENSG00000187051.4477.05150265.173600.847109.480508.47980HepG2UTP3
RPS19BP1ENSG00000187051.4253.19980169.702200.577202.412601.39890HepG2XPO5
RPS19BP1ENSG00000187051.4846.45300482.546900.8107013.6960012.53610K562AGGF1
RPS19BP1ENSG00000187051.4620.79000460.569600.430603.898302.07630K562AKAP1
RPS19BP1ENSG00000187051.4872.79660530.268800.718803.957002.73720K562AKAP8
RPS19BP1ENSG00000187051.4787.01330502.117500.648303.737902.97600K562AKAP8L
RPS19BP1ENSG00000187051.41450.782401001.880200.534005.072403.31320K562APOBEC3C
RPS19BP1ENSG00000187051.4746.37060526.852700.502405.388504.06390K562ATP5C1
RPS19BP1ENSG00000187051.4375.47720698.80900-0.896203.887302.58720K562CNOT7
RPS19BP1ENSG00000187051.41036.812101396.74310-0.429902.634801.68340K562CELF1
RPS19BP1ENSG00000187051.4541.86240399.023100.441403.616802.07920K562DDX27
RPS19BP1ENSG00000187051.41394.74510651.105801.0989025.6881023.89190K562DDX47
RPS19BP1ENSG00000187051.4606.37680409.516200.566203.024801.68150K562EEF2
RPS19BP1ENSG00000187051.4535.95500395.586700.438002.393901.54650K562EFTUD2
RPS19BP1ENSG00000187051.41020.76670853.000400.258902.077601.43910K562EIF2S2
RPS19BP1ENSG00000187051.4408.37610249.294400.711903.357402.24050K562EIF3A
RPS19BP1ENSG00000187051.4431.64900198.410201.1213013.6190011.81760K562EIF3G
RPS19BP1ENSG00000187051.4225.56180331.75790-0.556602.842201.69820K562FKBP4
RPS19BP1ENSG00000187051.4821.15710507.034800.695503.615902.93880K562FXR1
RPS19BP1ENSG00000187051.457.52490160.16560-1.477307.614006.31940K562G3BP2
RPS19BP1ENSG00000187051.41619.612301136.635800.510802.045501.38960K562GRSF1
RPS19BP1ENSG00000187051.4263.95270381.75220-0.532403.155402.52360K562HNRNPC
RPS19BP1ENSG00000187051.4587.11250347.520700.756406.086204.63280K562HNRNPM
RPS19BP1ENSG00000187051.4570.10650279.598201.027804.269402.87820K562IGF2BP2
RPS19BP1ENSG00000187051.4422.31140284.345400.570604.029002.53180K562IGF2BP3
RPS19BP1ENSG00000187051.4589.31090293.738301.0044012.9210011.00430K562MAGOH
RPS19BP1ENSG00000187051.4652.54990510.087000.355202.476501.47760K562MAK16
RPS19BP1ENSG00000187051.4554.26170293.125900.918906.324204.84830K562MATR3
RPS19BP1ENSG00000187051.4770.49130596.932300.368102.942101.99670K562MBNL1
RPS19BP1ENSG00000187051.4525.81860646.87120-0.298902.150101.43200K562MTPAP
RPS19BP1ENSG00000187051.4581.14920718.68590-0.306502.618801.89010K562NSUN2
RPS19BP1ENSG00000187051.4323.18130671.34750-1.054704.510202.90170K562PABPC1
RPS19BP1ENSG00000187051.4404.61910287.179500.494503.266601.79260K562PCBP1
RPS19BP1ENSG00000187051.4402.68810261.334600.623704.200002.98800K562PCBP2
RPS19BP1ENSG00000187051.4329.03230510.90320-0.634804.156103.13540K562PCBP3
RPS19BP1ENSG00000187051.4681.87090479.634800.507503.990002.98090K562PPIG
RPS19BP1ENSG00000187051.4842.66840384.955101.130209.728908.31610K562PRPF8
RPS19BP1ENSG00000187051.4756.86090285.393301.4070027.4694025.47360K562PTBP1
RPS19BP1ENSG00000187051.4841.33810497.923000.756707.618406.76350K562PUS1
RPS19BP1ENSG00000187051.4754.98510485.183900.637807.636806.68170K562RBM15
RPS19BP1ENSG00000187051.4519.56270273.598900.925109.805308.06990K562RBM22
RPS19BP1ENSG00000187051.4412.59540266.752000.629104.122802.31950K562RBM34
RPS19BP1ENSG00000187051.4826.82790392.014401.0766010.173808.59130K562RPS19
RPS19BP1ENSG00000187051.4321.22380165.006400.961003.484602.35050K562RPS3
RPS19BP1ENSG00000187051.4485.70310709.22810-0.546205.600104.47020K562SF3A3
RPS19BP1ENSG00000187051.4282.73720166.556200.763405.393004.17120K562SF3B4
RPS19BP1ENSG00000187051.4628.53710279.792701.1675016.5164014.79590K562SRSF1
RPS19BP1ENSG00000187051.4264.79120159.265600.733303.776802.51810K562SRSF4
RPS19BP1ENSG00000187051.4432.92600264.273300.712005.525503.94600K562SRSF5
RPS19BP1ENSG00000187051.4356.08630506.90290-0.509503.057701.73290K562STAU1
RPS19BP1ENSG00000187051.4631.58320283.142301.1573012.1514010.48340K562TARDBP
RPS19BP1ENSG00000187051.4515.47920273.129600.916209.999608.32670K562TIA1
RPS19BP1ENSG00000187051.4437.57550268.083400.706705.255003.64720K562TRA2A
RPS19BP1ENSG00000187051.4995.813501397.21230-0.488603.043301.56410K562UBE2L3
RPS19BP1ENSG00000187051.4459.73720652.04890-0.504204.175703.09310K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPS19BP1 is not available on ENCORE database.





2 RBPs can affect the splicing of RPS19BP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPS19BP1ENSG00000187051.4chr22-3992646839926559399258243992592239928399399285280.057000.000040.00570includedHepG2IGF2BP3
A3SSRPS19BP1ENSG00000187051.4chr22-3992582439926040399258243992592239928399399285280.095000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPS19BP1 is not avaliable on ENCORE database.