RPAP2

General Information

Gene Name       : RPAP2
Gene ID             : ENSG00000122484.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RPAP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPAP2ENSG00000122484.818.8215.8817.35ENCSR000AEF
HepG2RPAP2ENSG00000122484.89.9320.3815.15ENCSR985KAT
K562RPAP2ENSG00000122484.821.5124.4622.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPAP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPAP2 RNA is bound by 14 proteins.  







eCLIP assay for RPAP2 is not avaliable on ENCORE database.





14 proteins are bound to RPAP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr19285320092853421+3'-UTR4.238603.50894K562SAFB2
chr19281142792811467+CDS4.704034.45914HepG2PRPF8
chr19277276792772829+CDS4.165306.65960HepG2BCLAF1
chr19281146792811515+CDS,intron-Proximal4.662016.95612HepG2PRPF8
chr19278616292786189+CDS3.580343.87469HepG2BCLAF1
chr19278904992789088+CDS3.241303.27569HepG2BCLAF1
chr19276983992769865+CDS,intron-Proximal3.728303.68471HepG2BCLAF1
chr19278616092786195+CDS,intron-Proximal3.960775.24452HepG2PPIG
chr19276709192767147+CDS,intron-Distal3.843617.65975HepG2BCLAF1
chr19276959692769633+CDS,intron-Proximal5.080346.58593HepG2BCLAF1
chr19281144392811504+CDS,intron-Proximal3.127143.67092K562PRPF8
chr19280190692801945+CDS4.422593.45943HepG2BCLAF1
chr19276953392769582+CDS,intron-Proximal4.320526.84316HepG2BCLAF1
chr19276994592770048+intron-Distal,intron-Proximal3.207025.69331HepG2QKI
chr19279577892795930+intron-Distal3.396563.68839K562KHSRP
chr19277515492775233+intron-Distal5.9987616.30531K562HNRNPL
chr19279842592798455+intron-Distal3.058033.35050HepG2SUGP2
chr19279447192794536+intron-Distal5.336225.37406HepG2HNRNPM
chr19279309492793146+intron-Distal4.509025.44433K562EXOSC5
chr19279822192798311+intron-Distal3.283257.08259HepG2SUGP2
chr19279184192791894+intron-Distal4.064763.30696K562EXOSC5
chr19279210992792219+intron-Distal5.257838.13679K562HNRNPM
chr19279602092796061+intron-Distal3.273353.35050HepG2SUGP2
chr19279211692792183+intron-Distal3.316016.31916HepG2SUGP2
chr19279768492797756+intron-Distal4.169878.40280HepG2SUGP2
chr19280368492803777+intron-Distal4.210573.49011K562KHSRP
chr19279447092794495+intron-Distal4.179528.30916K562HNRNPM
chr19277505692775114+intron-Distal4.5437515.23634HepG2HNRNPL
chr19277511892775144+intron-Distal4.110184.05919K562AGGF1
chr19277509992775154+intron-Distal5.139578.62021K562HNRNPL
chr19282089092820978+intron-Distal4.292293.27582HepG2SFPQ
chr19277515992775221+intron-Distal4.318044.87455HepG2AGGF1
chr19282667592826723+intron-Distal3.805375.88747HepG2HNRNPL
chr19280372492803826+intron-Distal4.308744.00239HepG2KHSRP
chr19280339392803475+intron-Distal4.067874.58794K562KHSRP
chr19279199592792094+intron-Distal3.107107.00841HepG2SUGP2
chr19279204092792090+intron-Distal4.646845.44433K562EXOSC5
chr19279812992798182+intron-Distal3.407454.35402HepG2SUGP2
chr19277517492775227+intron-Distal4.755748.48317HepG2HNRNPL
chr19282378392823946+intron-Distal4.178854.47026K562MATR3
chr19279838392798425+intron-Distal4.025973.86809HepG2SUGP2
chr19282668392826785+intron-Distal4.453946.32746K562HNRNPL
chr19279447092794569+intron-Distal4.868217.14375HepG2SUGP2
chr19279210992792180+intron-Distal3.741487.91672HepG2HNRNPM
chr19279730792797378+intron-Distal4.040658.05781HepG2SUGP2
chr19279449592794555+intron-Distal4.6018811.62920K562HNRNPM
chr19279332192793390+intron-Distal4.164773.59917K562EXOSC5
chr19283020392830343+intron-Distal4.7887712.88973HepG2QKI
chr19277514492775211+intron-Distal6.2978612.92204K562AGGF1
chr19277383992773888+intron-Distal3.905523.45317HepG2HNRNPL
chr19279184792791898+intron-Distal3.138503.10640HepG2SUGP2
chr19279767192797737+intron-Distal4.005925.28137HepG2MATR3
chr19279447292794516+intron-Distal3.903793.01445K562EXOSC5
chr19277511492775174+intron-Distal4.8539420.12524HepG2HNRNPL
chr19280203392802082+intron-Proximal5.271306.83215HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPAP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPAP2 is not available on ENCORE database.

  • 91 RBPs can affect the levels of RPAP2.  








The Knockdown/knockout RNA-Seq assay for RPAP2 is not available on ENCORE database.





91 RBPs can affect the gene expression of RPAP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPAP2ENSG00000122484.8933.60170633.465500.559404.227603.08110HepG2ABCF1
RPAP2ENSG00000122484.8530.33360380.291500.479703.033501.99230HepG2ADAR
RPAP2ENSG00000122484.8445.65320581.37290-0.383503.078202.27430HepG2AKAP8L
RPAP2ENSG00000122484.81149.41800815.597600.494904.630203.87980HepG2BOP1
RPAP2ENSG00000122484.8593.13060748.75920-0.336201.916701.33330HepG2CPSF6
RPAP2ENSG00000122484.8439.77190307.751600.514903.676902.45120HepG2CSTF2
RPAP2ENSG00000122484.8439.74820612.80720-0.478805.315604.33360HepG2DAZAP1
RPAP2ENSG00000122484.8619.59440416.076200.574403.967403.16840HepG2DDX21
RPAP2ENSG00000122484.8655.67550406.726600.688806.694605.27980HepG2DDX24
RPAP2ENSG00000122484.8297.49530481.32390-0.694102.506501.91670HepG2DDX6
RPAP2ENSG00000122484.8700.53590553.620800.339502.717802.04580HepG2DKC1
RPAP2ENSG00000122484.8186.39260382.93720-1.0388011.152609.81850HepG2DNAJC21
RPAP2ENSG00000122484.8290.34530379.55100-0.386502.640602.00130HepG2DNAJC2
RPAP2ENSG00000122484.8288.11900462.89820-0.684002.388401.83580HepG2EIF2S1
RPAP2ENSG00000122484.8569.32760392.626000.536003.718902.48970HepG2EIF3G
RPAP2ENSG00000122484.8714.60410511.648700.481902.589701.97020HepG2EIF4A3
RPAP2ENSG00000122484.8792.26840604.527700.390103.111302.23350HepG2EIF4G1
RPAP2ENSG00000122484.8750.86810548.808800.452203.332302.13980HepG2ESF1
RPAP2ENSG00000122484.8996.98560854.418700.222501.991601.46350HepG2ETF1
RPAP2ENSG00000122484.8451.02840639.66970-0.504102.807302.03070HepG2FIP1L1
RPAP2ENSG00000122484.81601.49610750.050501.094303.162402.07430HepG2FTO
RPAP2ENSG00000122484.8707.58750508.084100.477702.730201.84620HepG2G3BP2
RPAP2ENSG00000122484.81111.16670848.766500.388502.427801.82400HepG2GPKOW
RPAP2ENSG00000122484.8560.41660430.025900.382002.131701.51380HepG2HNRNPC
RPAP2ENSG00000122484.8327.12480484.45610-0.566501.998101.39750HepG2HNRNPK
RPAP2ENSG00000122484.8358.67630558.23600-0.638207.595506.52720HepG2HNRNPL
RPAP2ENSG00000122484.8630.77030441.404600.514904.271403.11400HepG2HNRNPM
RPAP2ENSG00000122484.8300.14950427.18290-0.509204.243403.50550HepG2HNRNPU
RPAP2ENSG00000122484.8765.12990549.816000.476702.750801.52990HepG2HSPD1
RPAP2ENSG00000122484.8355.34300436.35350-0.296301.997001.36220HepG2ILF2
RPAP2ENSG00000122484.8370.15190528.96390-0.515105.250703.85460HepG2KIF1C
RPAP2ENSG00000122484.8971.26790516.133100.9120010.510009.25800HepG2MAGOH
RPAP2ENSG00000122484.8746.27000519.067000.523702.142501.58320HepG2MATR3
RPAP2ENSG00000122484.8437.59070607.65560-0.473704.139603.20660HepG2NOL12
RPAP2ENSG00000122484.8163.51860263.78970-0.689902.974601.32970HepG2PA2G4
RPAP2ENSG00000122484.8649.18670461.721500.491504.848204.08040HepG2PCBP1
RPAP2ENSG00000122484.8719.24140508.012500.501502.559101.56000HepG2PCBP2
RPAP2ENSG00000122484.8209.55320291.79380-0.477602.455901.30200HepG2PKM
RPAP2ENSG00000122484.8694.67530498.430700.478804.787503.80120HepG2PRPF4
RPAP2ENSG00000122484.8876.46320580.046200.595402.008201.48920HepG2PUF60
RPAP2ENSG00000122484.8487.31580589.40410-0.274401.965101.42690HepG2PUS1
RPAP2ENSG00000122484.8606.84440854.22010-0.493303.635202.66690HepG2RBM15
RPAP2ENSG00000122484.81039.62840714.139400.541706.889706.15880HepG2RBM22
RPAP2ENSG00000122484.8723.96580522.859000.469404.363003.71150HepG2NELFE
RPAP2ENSG00000122484.8607.05190486.948500.318002.144101.59230HepG2RECQL
RPAP2ENSG00000122484.8716.25100481.537700.572703.070502.07700HepG2RPS10
RPAP2ENSG00000122484.8484.89410343.328700.498003.404002.73030HepG2RPS19
RPAP2ENSG00000122484.8529.18420313.460000.755404.871403.80840HepG2RPS3A
RPAP2ENSG00000122484.8287.76240380.42620-0.402702.602001.97420HepG2SAFB2
RPAP2ENSG00000122484.81316.67510801.728500.715608.930107.73210HepG2SF3B1
RPAP2ENSG00000122484.8803.67190489.153900.716208.023007.09770HepG2SF3B4
RPAP2ENSG00000122484.8968.40590806.600300.263702.560102.07150HepG2SRFBP1
RPAP2ENSG00000122484.81333.86190510.559301.3854044.5744043.17820HepG2SRSF1
RPAP2ENSG00000122484.8700.55660572.691100.290602.123001.56590HepG2SRSF5
RPAP2ENSG00000122484.81294.75420700.330700.8865010.9465010.05810HepG2SSB
RPAP2ENSG00000122484.8563.38150458.878900.295901.811301.33890HepG2TAF15
RPAP2ENSG00000122484.8984.48710789.521400.318302.015601.38540HepG2TARDBP
RPAP2ENSG00000122484.8959.62430537.905600.835002.596601.55940HepG2TBRG4
RPAP2ENSG00000122484.8725.76280415.093900.8060010.622709.75270HepG2TIAL1
RPAP2ENSG00000122484.8292.82840418.79820-0.516204.229203.56100HepG2TRIM56
RPAP2ENSG00000122484.8725.99670566.653300.357402.371801.56780HepG2TUFM
RPAP2ENSG00000122484.81118.27170547.250101.0309014.8160013.32350HepG2U2AF1
RPAP2ENSG00000122484.81213.46740660.411700.877602.486301.55760HepG2U2AF2
RPAP2ENSG00000122484.8804.16490539.143400.576703.449202.26680HepG2XRCC6
RPAP2ENSG00000122484.8825.80430489.766400.753605.805703.84680HepG2ZRANB2
RPAP2ENSG00000122484.8545.55410392.276400.475803.171701.89520K562AARS
RPAP2ENSG00000122484.8410.00050559.02850-0.447303.684203.04650K562AGGF1
RPAP2ENSG00000122484.8447.20350581.68630-0.379302.285301.69010K562AKAP8L
RPAP2ENSG00000122484.81111.99150886.184300.327401.846301.34830K562AQR
RPAP2ENSG00000122484.8492.54060610.31340-0.309302.164401.36400K562ATP5C1
RPAP2ENSG00000122484.8385.09330492.41630-0.354702.407601.51470K562BCLAF1
RPAP2ENSG00000122484.8454.45640637.06690-0.487302.146501.44690K562CPSF6
RPAP2ENSG00000122484.82073.45960917.698301.1758039.5692037.38670K562DDX47
RPAP2ENSG00000122484.8526.61250221.810401.247308.732906.91000K562EIF3A
RPAP2ENSG00000122484.8625.42940432.400400.532405.100604.03300K562EIF3G
RPAP2ENSG00000122484.8503.88150829.66800-0.719407.827906.32860K562FIP1L1
RPAP2ENSG00000122484.8867.71130648.339500.420402.707701.86340K562FMR1
RPAP2ENSG00000122484.8703.47310337.657501.0588017.6253016.20890K562FXR1
RPAP2ENSG00000122484.8557.53950413.285100.431802.117701.51100K562G3BP2
RPAP2ENSG00000122484.8340.75290479.81030-0.493702.508001.54690K562IGF2BP2
RPAP2ENSG00000122484.8289.64370452.29410-0.643002.242501.37020K562PABPN1
RPAP2ENSG00000122484.8680.66310517.643100.394902.180501.44210K562PCBP3
RPAP2ENSG00000122484.8634.05790397.046600.675207.047705.78070K562POLR2G
RPAP2ENSG00000122484.8651.60760941.80470-0.531404.825303.69600K562PPIG
RPAP2ENSG00000122484.8279.49990385.00510-0.462002.381701.54930K562PSIP1
RPAP2ENSG00000122484.8636.30150489.976900.376902.726602.06660K562PTBP1
RPAP2ENSG00000122484.82284.711001178.786700.9546013.4788011.66350K562PUF60
RPAP2ENSG00000122484.8427.06750576.93200-0.433902.642702.10820K562PUS1
RPAP2ENSG00000122484.8250.55030351.14810-0.487002.652201.68200K562RCC2
RPAP2ENSG00000122484.8739.94670408.638800.856508.241106.81790K562RPS19
RPAP2ENSG00000122484.8944.68540623.630900.599003.256001.52750K562RPS3A
RPAP2ENSG00000122484.8431.72380285.848700.594802.324001.41640K562RPS3
RPAP2ENSG00000122484.8482.22940353.788400.446702.739001.66350K562SAFB
RPAP2ENSG00000122484.8875.23260650.961500.427003.330902.43990K562SF3A3
RPAP2ENSG00000122484.81157.82480578.614401.0006010.081308.14240K562SF3B1
RPAP2ENSG00000122484.8549.07960430.077300.352302.414901.61850K562SF3B4
RPAP2ENSG00000122484.8276.90070475.01020-0.778602.922101.64840K562SNRNP200
RPAP2ENSG00000122484.8753.44640480.333800.649406.887005.77940K562SRSF1
RPAP2ENSG00000122484.8761.42580398.252600.9349013.7482011.91930K562SYNCRIP
RPAP2ENSG00000122484.8352.66790468.93690-0.411102.534101.75490K562TIA1
RPAP2ENSG00000122484.8247.43010370.32490-0.581803.077902.08610K562TIAL1
RPAP2ENSG00000122484.8346.43080460.13140-0.409502.324401.34120K562TRA2A
RPAP2ENSG00000122484.8244.29110393.28940-0.687004.502003.23020K562TRIM56
RPAP2ENSG00000122484.8101.02050376.33530-1.8974018.9225015.02230K562TRNAU1AP
RPAP2ENSG00000122484.8850.42120622.436500.450205.512604.35880K562WDR43
RPAP2ENSG00000122484.8602.29300360.267700.741303.562401.70440K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPAP2 is not available on ENCORE database.





3 RBPs can affect the splicing of RPAP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPAP2ENSG00000122484.8chr1+927727559277283392769840927699069278615592786191-0.284000.005560.05775excludedHepG2U2AF2
SERPAP2ENSG00000122484.8chr1+9276589392766059927657509276579692767032927671470.096000.007790.06661includedK562AQR
A3SSRPAP2ENSG00000122484.8chr1+9276982092769906927698409276990692769533927696320.064000.013890.07005longerK562AQR
MXERPAP2ENSG00000122484.8chr1+9279894792799030928019039280198492789001927899329281140292811471-0.183000.002470.019902includedK562AQR
MXERPAP2ENSG00000122484.8chr1+9276575092765796927670329276714792764521927647039276953392769632-0.440000.002120.047882includedK562TARDBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPAP2 is not avaliable on ENCORE database.