RABGEF1

General Information

Gene Name       : RABGEF1
Gene ID             : ENSG00000154710.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RABGEF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RABGEF1ENSG00000154710.1728.8524.7926.82ENCSR000AEF
HepG2RABGEF1ENSG00000154710.1711.6715.0013.34ENCSR985KAT
K562RABGEF1ENSG00000154710.1717.1019.7218.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RABGEF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RABGEF1 RNA is bound by 35 proteins.  







eCLIP assay for RABGEF1 is not avaliable on ENCORE database.





35 proteins are bound to RABGEF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr76626049766260588+3'-UTR,CDS,intron-Proximal3.904324.51739HepG2BCLAF1
chr76627409166274258+3'-UTR,CDS3.562088.20757HepG2BCLAF1
chr76627505466275120+3'-UTR3.136673.06830K562UPF1
chr76627411466274216+3'-UTR,CDS3.140494.05316K562GRWD1
chr76627450066274568+3'-UTR3.662933.91876HepG2U2AF2
chr76627028866270356+3'-UTR,CDS3.094594.03389K562ZNF622
chr76623686766236969+3'-UTR,5'-UTR,CDS,intron-Proximal3.065016.29223K562UCHL5
chr76627412066274219+3'-UTR,CDS3.320097.21479K562UCHL5
chr76627472466274768+3'-UTR5.3923111.85613K562PUM2
chr76627027266270337+3'-UTR,CDS3.743863.05875K562RBM15
chr76627421666274278+3'-UTR,CDS3.372623.07653K562ZNF622
chr76623524966235401+3'-UTR,intron-Distal,intron-Proximal3.590664.16402K562TARDBP
chr76627391066274049+3'-UTR,CDS3.961886.28172K562RBM15
chr76620568766205785+5'-UTR,intron-Distal,intron-Proximal4.281364.94878HepG2GRWD1
chr76614713166147173+5'-UTR,intron-Distal4.423814.57471HepG2SFPQ
chr76614712266147224+5'-UTR,intron-Distal3.736976.99195K562NONO
chr76620567466205737+5'-UTR,intron-Distal3.420156.59225HepG2CSTF2T
chr76620569066205732+5'-UTR,intron-Distal3.917833.05875K562RBM15
chr76614712366147244+5'-UTR,intron-Distal3.990985.97159K562SRSF1
chr76620550866205580+5'-UTR,intron-Distal4.630086.13673K562RBM15
chr76624025866240374+3'-UTR,CDS3.022407.36535K562ZNF622
chr76624021366240246+3'-UTR,CDS,intron-Proximal4.395834.16170K562UCHL5
chr76623700166237069+CDS,intron-Proximal4.726575.58500K562UCHL5
chr76624023766240374+3'-UTR,CDS4.686164.66217K562ZNF800
chr76615985166159914+intron-Distal3.161813.50009K562CSTF2T
chr76617234666172382+intron-Distal3.082313.28806K562KHSRP
chr76617723466177370+intron-Distal,intron-Proximal3.363884.70224K562KHSRP
chr76616575666165861+intron-Distal3.522013.61570K562SRSF1
chr76617925966179338+intron-Distal3.855033.71397K562KHSRP
chr76618228566182381+intron-Distal3.573485.35459K562KHSRP
chr76617481966174925+intron-Distal3.503724.26114HepG2HNRNPL
chr76616577566165864+intron-Distal3.167934.69671HepG2PPIG
chr76627281766272874+intron-Distal,intron-Proximal3.849783.25055K562U2AF2
chr76623671166236789+intron-Distal,intron-Proximal4.484724.29034K562U2AF2
chr76616735666167435+intron-Distal3.264934.98641K562TARDBP
chr76618164766181714+intron-Distal3.492744.05280K562CSTF2T
chr76623291966232991+intron-Distal4.301123.62366HepG2HNRNPM
chr76618004966180119+intron-Distal5.1390111.02443K562PTBP1
chr76619426366194413+intron-Distal4.415747.70131HepG2PCBP2
chr76620583966205903+intron-Distal,intron-Proximal3.174513.67992HepG2XRN2
chr76616190866161961+intron-Distal3.678595.56645HepG2CSTF2T
chr76626445066264551+intron-Distal,intron-Proximal4.132514.76003K562KHSRP
chr76623670966236789+intron-Distal,intron-Proximal4.7942723.00157HepG2U2AF2
chr76620187966201959+intron-Distal3.433163.51804HepG2HNRNPL
chr76617228766172313+intron-Distal3.443046.80241K562KHSRP
chr76619450766194651+intron-Distal4.5441319.08588HepG2PTBP1
chr76615984666159918+intron-Distal3.302597.81475HepG2CSTF2T
chr76616256866162648+intron-Distal4.941274.33458HepG2XPO5
chr76615843066158577+intron-Distal4.203897.56829HepG2HNRNPK
chr76614730066147431+intron-Distal,intron-Proximal5.5890513.22562K562NONO
chr76617222166172287+intron-Distal3.369727.21887K562KHSRP
chr76616210066162161+intron-Distal3.420114.46248HepG2FAM120A
chr76627131466271419+intron-Distal3.799445.86177HepG2U2AF2
chr76616685666166910+intron-Distal4.260483.89294K562KHSRP
chr76619372166193835+intron-Distal5.224639.00303HepG2PCBP2
chr76619775866197819+intron-Distal3.201823.99165HepG2PTBP1
chr76616752466167539+intron-Distal3.326093.84371HepG2HNRNPC
chr76616272766162764+intron-Distal3.863973.38470HepG2NKRF
chr76619770666197758+intron-Distal3.792114.19039HepG2PTBP1
chr76617366566173746+intron-Distal3.843993.37208HepG2ILF3
chr76616753966167607+intron-Distal3.376065.97391HepG2HNRNPC
chr76620583566205907+intron-Distal,intron-Proximal3.237463.00054HepG2PRPF4
chr76616037066160419+intron-Distal3.493754.45183HepG2CSTF2T
chr76614745166147514+intron-Distal3.510126.99195K562NONO
chr76616573066165801+intron-Distal3.867625.09028HepG2U2AF2
chr76616576366165845+intron-Distal4.096353.32766HepG2SRSF7
chr76616930366169396+intron-Distal3.867993.43813HepG2HNRNPC
chr76616695366167051+intron-Distal3.046163.17661HepG2HNRNPL
chr76617514166175238+intron-Distal3.954688.11145K562KHSRP
chr76615710066157172+intron-Distal3.719749.85321HepG2CSTF2
chr76615771166157774+intron-Distal4.174134.36307HepG2HNRNPK
chr76620584566205934+intron-Distal,intron-Proximal4.445639.23607HepG2EFTUD2
chr76616228366162322+intron-Distal3.062853.04847HepG2CSTF2T
chr76615994566159978+intron-Distal4.305574.86859HepG2CSTF2T
chr76618001766180158+intron-Distal5.1688315.99351HepG2PTBP1
chr76619449666194645+intron-Distal5.073039.53330K562PTBP1
chr76616682266166856+intron-Distal3.101553.28806K562KHSRP
chr76619435266194446+intron-Distal4.122803.76275K562PTBP1
chr76627044266270511+intron-Distal,intron-Proximal4.184103.50322HepG2CDC40
chr76619772766197825+intron-Distal4.399074.22415K562PTBP1
chr76619031166190390+intron-Distal3.184514.91534HepG2HNRNPK
chr76617579666175864+intron-Distal3.025273.33460HepG2ILF3
chr76619435066194458+intron-Distal3.800268.26814HepG2PTBP1
chr76622482866224908+intron-Distal3.953144.02199K562HNRNPL
chr76620753066207597+intron-Distal3.465323.12625HepG2QKI
chr76618011966180170+intron-Distal5.215016.90462K562PTBP1
chr76615972466159785+intron-Distal4.386924.41148HepG2GTF2F1
chr76625926866259357+intron-Distal3.920606.39777K562PTBP1
chr76616352766163594+intron-Distal3.765495.16644HepG2FAM120A
chr76623585866236085+intron-Distal3.875226.19377K562KHSRP
chr76616702066167096+intron-Distal4.4142310.43576HepG2HNRNPK
chr76616246066162539+intron-Distal4.399085.31936HepG2HNRNPK
chr76623434066234388+intron-Distal4.325704.03915HepG2SUGP2
chr76614754466147592+intron-Distal4.307924.58989K562NONO
chr76620639166206449+intron-Distal4.447524.69805HepG2NKRF
chr76615983466159906+intron-Distal3.280924.36184HepG2PRPF4
chr76620610366206219+intron-Distal4.421664.23759K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RABGEF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RABGEF1 is not available on ENCORE database.

  • 74 RBPs can affect the levels of RABGEF1.  








The Knockdown/knockout RNA-Seq assay for RABGEF1 is not available on ENCORE database.





74 RBPs can affect the gene expression of RABGEF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RABGEF1ENSG00000154710.11224.25960346.80870-0.629003.566202.45060HepG2ADAR
RABGEF1ENSG00000154710.11389.46420645.93710-0.729905.158504.46060HepG2AKAP1
RABGEF1ENSG00000154710.11248.20590387.10650-0.641204.457203.50720HepG2CALR
RABGEF1ENSG00000154710.11535.88460709.80080-0.405504.616303.69610HepG2DAZAP1
RABGEF1ENSG00000154710.11254.25500357.38400-0.491202.671302.00370HepG2DDX21
RABGEF1ENSG00000154710.11993.95190531.508700.903009.119008.06710HepG2DDX6
RABGEF1ENSG00000154710.11251.12960349.19640-0.475602.931402.21120HepG2DNAJC21
RABGEF1ENSG00000154710.11201.12370309.22030-0.620602.086501.41370HepG2FIP1L1
RABGEF1ENSG00000154710.11200.66770367.02660-0.871106.247205.09280HepG2FUBP3
RABGEF1ENSG00000154710.11296.47480478.20440-0.689703.928302.60480HepG2FUS
RABGEF1ENSG00000154710.11287.27030569.72450-0.987909.519708.30760HepG2FXR1
RABGEF1ENSG00000154710.11101.80330271.15740-1.413304.403503.26360HepG2GEMIN5
RABGEF1ENSG00000154710.11203.77470352.54240-0.790804.766403.94930HepG2HNRNPA1
RABGEF1ENSG00000154710.11476.13560652.27510-0.454104.432203.29890HepG2HNRNPA2B1
RABGEF1ENSG00000154710.11296.54190392.15580-0.403201.891901.30740HepG2HNRNPC
RABGEF1ENSG00000154710.11427.94840646.60700-0.595501.902301.33000HepG2HNRNPL
RABGEF1ENSG00000154710.11318.29910213.306100.577402.414701.52510HepG2HNRNPM
RABGEF1ENSG00000154710.11165.92370389.56180-1.2313012.2079011.00910HepG2HNRNPU
RABGEF1ENSG00000154710.11396.94430257.488600.624301.964901.34660HepG2IGF2BP1
RABGEF1ENSG00000154710.11283.63180444.07780-0.646803.762602.79150HepG2LARP4
RABGEF1ENSG00000154710.11465.36900703.83130-0.596903.450602.60030HepG2NOL12
RABGEF1ENSG00000154710.11199.41610347.45500-0.801005.762804.73290HepG2PPIL4
RABGEF1ENSG00000154710.11279.92530636.47250-1.185102.763502.21630HepG2PTBP1
RABGEF1ENSG00000154710.11597.86320713.15110-0.254402.205301.66350HepG2PUM1
RABGEF1ENSG00000154710.11901.02430436.742801.044707.395706.27440HepG2RAVER1
RABGEF1ENSG00000154710.1129.65080383.92090-3.694705.065101.93810HepG2RBFOX2
RABGEF1ENSG00000154710.11144.76020296.28270-1.033303.772203.06460HepG2RPS19
RABGEF1ENSG00000154710.11273.26910390.26770-0.514102.715901.92160HepG2RPS2
RABGEF1ENSG00000154710.11563.54330840.71450-0.577103.082502.23990HepG2RPS3A
RABGEF1ENSG00000154710.11265.82300398.37830-0.583703.416302.22020HepG2RPS5
RABGEF1ENSG00000154710.11327.50040211.444900.631103.334202.48130HepG2RRP9
RABGEF1ENSG00000154710.11207.59190346.91170-0.740806.397405.47840HepG2SAFB2
RABGEF1ENSG00000154710.11375.52340644.11630-0.778404.648403.77500HepG2SLBP
RABGEF1ENSG00000154710.11135.49690404.54020-1.5780011.7454010.56360HepG2SMN1
RABGEF1ENSG00000154710.11998.52120574.977000.7962014.9542014.03600HepG2SRFBP1
RABGEF1ENSG00000154710.11601.37760302.885500.989403.168902.08800HepG2SRSF3
RABGEF1ENSG00000154710.11439.25200663.30060-0.594607.092306.15400HepG2SRSF5
RABGEF1ENSG00000154710.11904.01590562.675800.683902.207001.70250HepG2SRSF9
RABGEF1ENSG00000154710.1186.27010206.47670-1.259003.537802.14840HepG2STAU1
RABGEF1ENSG00000154710.11359.25860754.39150-1.0703013.5309012.32670HepG2SUCLG1
RABGEF1ENSG00000154710.11411.58910264.479300.637903.703502.98000HepG2U2AF1
RABGEF1ENSG00000154710.11432.73960694.64590-0.682805.162803.99810HepG2UBE2L3
RABGEF1ENSG00000154710.11369.48050252.559000.548802.527501.57120HepG2UPF2
RABGEF1ENSG00000154710.11323.35780480.38530-0.571102.905001.81890HepG2XRCC6
RABGEF1ENSG00000154710.111353.68910477.118801.5044030.9325029.16630K562AQR
RABGEF1ENSG00000154710.11210.06500124.160200.758503.728402.46710K562CCAR1
RABGEF1ENSG00000154710.11285.81970388.30930-0.442102.860701.32610K562CEBPZ
RABGEF1ENSG00000154710.111079.44770369.068301.5482039.5567036.63400K562CELF1
RABGEF1ENSG00000154710.11248.06290130.799400.923204.418602.07150K562DDX1
RABGEF1ENSG00000154710.11302.19990446.34760-0.562703.467302.11030K562DDX21
RABGEF1ENSG00000154710.11258.21520423.09470-0.712406.014505.01540K562EIF2S2
RABGEF1ENSG00000154710.11206.24750634.15340-1.620503.503101.32450K562EIF3H
RABGEF1ENSG00000154710.11473.94990300.339300.658003.359602.32760K562EIF4G2
RABGEF1ENSG00000154710.11365.43230255.150700.518202.616301.52560K562FKBP4
RABGEF1ENSG00000154710.11497.76710326.107300.610006.014703.92590K562FUS
RABGEF1ENSG00000154710.11646.16950475.514900.442302.274101.64090K562G3BP2
RABGEF1ENSG00000154710.11225.66870563.73580-1.3208011.5849010.01160K562GRSF1
RABGEF1ENSG00000154710.11447.60680128.688401.798303.483701.86150K562ILF2
RABGEF1ENSG00000154710.11207.00870125.391000.723202.807001.31310K562KHDRBS1
RABGEF1ENSG00000154710.11681.65280328.436501.053309.696407.00620K562NOL12
RABGEF1ENSG00000154710.11269.0673034.373802.968502.573301.62730K562PABPN1
RABGEF1ENSG00000154710.11247.9796040.808202.603203.968602.10640K562PPP1R8
RABGEF1ENSG00000154710.11634.13710327.721900.9522010.176208.58910K562PUF60
RABGEF1ENSG00000154710.111039.99210348.377801.577706.253404.59220K562PUM1
RABGEF1ENSG00000154710.11639.40870341.551400.904504.827703.54630K562PUM2
RABGEF1ENSG00000154710.11174.77500428.14280-1.292605.179103.74910K562RPS3
RABGEF1ENSG00000154710.11308.25300131.826201.225406.565802.97570K562RTF1
RABGEF1ENSG00000154710.11344.26080128.177701.425305.457603.18750K562SBDS
RABGEF1ENSG00000154710.11297.09590494.55740-0.735202.530601.71440K562SF3B4
RABGEF1ENSG00000154710.11237.98380136.782400.798903.689302.20960K562SLBP
RABGEF1ENSG00000154710.11315.76610129.115101.290103.731601.38710K562SMNDC1
RABGEF1ENSG00000154710.11217.68340413.43830-0.925403.805002.54070K562SRSF4
RABGEF1ENSG00000154710.11295.64030398.38450-0.430303.098001.85460K562SRSF7
RABGEF1ENSG00000154710.11455.3900043.163703.399109.962006.65080K562SUPT6H
RABGEF1ENSG00000154710.11435.16440213.508601.027206.049403.52830K562TUFM
RABGEF1ENSG00000154710.11638.24250476.122500.422703.372002.48820K562U2AF2
RABGEF1ENSG00000154710.111082.06810369.326801.5507037.7169033.89280K562UBE2L3
RABGEF1ENSG00000154710.11384.7347036.600403.3938028.2193024.31280K562XPO5
RABGEF1ENSG00000154710.11337.38360124.863501.433908.898605.76590K562XRCC6
RABGEF1ENSG00000154710.11580.3002042.463703.7724012.883008.97550K562YTHDC2
RABGEF1ENSG00000154710.11425.97200121.563401.808906.225302.86140K562ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RABGEF1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RABGEF1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RABGEF1 is not avaliable on ENCORE database.