PSMD7

General Information

Gene Name       : PSMD7
Gene ID             : ENSG00000103035.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PSMD7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PSMD7ENSG00000103035.10103.1893.3598.27ENCSR000AEF
HepG2PSMD7ENSG00000103035.10202.79207.16204.97ENCSR985KAT
K562PSMD7ENSG00000103035.10164.12152.33158.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PSMD7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PSMD7 RNA is bound by 25 proteins.  







eCLIP assay for PSMD7 is not avaliable on ENCORE database.





25 proteins are bound to PSMD7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr167433997374340045+3'-UTR5.441817.05883HepG2SUB1
chr167433820174338233+3'-UTR,CDS4.003063.34184HepG2GRWD1
chr167434008474340151+3'-UTR3.974513.27203K562IGF2BP2
chr167433918974339214+3'-UTR,CDS,intron-Distal3.729545.08388K562UCHL5
chr167433604874336171+3'-UTR,CDS,intron-Proximal3.545417.38298HepG2AQR
chr167433608874336137+3'-UTR,CDS,intron-Proximal3.278563.92281K562AQR
chr167434001874340154+3'-UTR4.893067.33375K562IGF2BP1
chr167433970174339748+3'-UTR3.388529.30098K562YBX3
chr167433995274339995+3'-UTR5.179178.97367K562YBX3
chr167433950474339649+3'-UTR,CDS3.389228.52133HepG2G3BP1
chr167433550074335530+3'-UTR,CDS3.311258.15573K562YBX3
chr167433919374339306+3'-UTR,CDS,intron-Distal,intron-Proximal3.316415.63070K562RBM15
chr167433820574338305+3'-UTR,CDS,intron-Proximal3.747315.99700HepG2AQR
chr167433830374338346+3'-UTR,intron-Proximal4.339459.80019K562AQR
chr167433823374338297+3'-UTR,CDS,intron-Proximal3.891865.28199HepG2GRWD1
chr167433545174335500+3'-UTR,CDS,intron-Proximal3.5152916.54071K562YBX3
chr167433944174339580+3'-UTR,CDS3.6792217.54870K562UCHL5
chr167433976974339874+3'-UTR4.483695.94530HepG2SUB1
chr167433553074335550+3'-UTR,CDS3.107135.79072K562YBX3
chr167433941274339448+3'-UTR,CDS3.118853.68829K562YBX3
chr167433941374339508+3'-UTR,CDS3.450958.68700K562ZNF622
chr167433822774338298+3'-UTR,CDS,intron-Proximal3.113903.17233HepG2BCLAF1
chr167434001474340065+3'-UTR3.470316.00087K562YBX3
chr167433998274340064+3'-UTR3.860843.38244K562NOLC1
chr167433842374338537+3'-UTR,intron-Distal3.830573.42844K562KHSRP
chr167433969174339806+3'-UTR3.702113.29239HepG2CSTF2
chr167433958074339639+3'-UTR,CDS5.5935612.14762K562UCHL5
chr167433824874338359+3'-UTR,CDS,intron-Proximal3.6574712.22854HepG2PRPF8
chr167433611174336164+3'-UTR,CDS4.184048.99212K562YBX3
chr167433928174339347+3'-UTR,CDS,intron-Proximal3.533765.58683HepG2GRWD1
chr167433950074339627+3'-UTR,CDS3.539694.08506K562APOBEC3C
chr167433974874339772+3'-UTR3.635496.16886K562YBX3
chr167433072674330753+5'-UTR5.397755.29846HepG2DDX3X
chr167433076774330903+5'-UTR,CDS,intron-Proximal4.8026710.82882K562GEMIN5
chr167433074674330877+5'-UTR,CDS4.516219.59797K562DROSHA
chr167433405774334116+5'-UTR,CDS,intron-Proximal5.680265.68502HepG2PRPF8
chr167433493974335002+5'-UTR,CDS,intron-Proximal4.371863.35169HepG2U2AF2
chr167433074574330858+5'-UTR,CDS3.7209310.06921HepG2RPS3
chr167433401174334036+5'-UTR,CDS,intron-Proximal3.3110010.65333K562DDX3X
chr167433076574330849+5'-UTR,CDS4.125467.69062K562FTO
chr167433075374330858+5'-UTR,CDS4.5136035.33778HepG2DDX3X
chr167433076674330862+5'-UTR,CDS3.7289610.19716K562HNRNPM
chr167433088574330911+5'-UTR,CDS,intron-Proximal3.653076.51619K562AQR
chr167433085874330888+5'-UTR,CDS,intron-Proximal3.5844812.98309K562DDX3X
chr167433077174330847+5'-UTR,CDS4.485546.88705HepG2SUB1
chr167433401174334048+5'-UTR,CDS,intron-Proximal3.588684.51027K562BUD13
chr167433072774330858+5'-UTR,CDS3.9690043.09004K562DDX3X
chr167433409774334116+5'-UTR,CDS,intron-Proximal4.922486.80771K562PRPF8
chr167433396474334038+5'-UTR,CDS,intron-Proximal3.930434.22551K562SF3B4
chr167433084974330887+5'-UTR,CDS,intron-Proximal3.395197.19592K562FTO
chr167433087974330937+5'-UTR,CDS,intron-Proximal4.0113810.64040HepG2PRPF8
chr167433558474335657+intron-Distal,intron-Proximal4.428165.99968K562PRPF8
chr167433417874334215+intron-Distal,intron-Proximal4.091953.12843K562PRPF8
chr167433411674334171+intron-Proximal5.6878512.17878K562PRPF8
chr167433555274335643+intron-Proximal5.8004511.56697K562AQR
chr167433091174330929+intron-Proximal5.653079.23760K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PSMD7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PSMD7 is not available on ENCORE database.

  • 82 RBPs can affect the levels of PSMD7.  








The Knockdown/knockout RNA-Seq assay for PSMD7 is not available on ENCORE database.





82 RBPs can affect the gene expression of PSMD7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PSMD7ENSG00000103035.62532.165803246.98290-0.358702.605501.69150HepG2ABCF1
PSMD7ENSG00000103035.65014.873003334.767900.588505.957905.21180HepG2AKAP1
PSMD7ENSG00000103035.61730.672602193.48060-0.341902.257001.44580HepG2BCLAF1
PSMD7ENSG00000103035.62978.029303588.69610-0.269102.251501.70630HepG2BOP1
PSMD7ENSG00000103035.61220.117001832.50890-0.586803.564602.69030HepG2CNOT7
PSMD7ENSG00000103035.64194.472303530.365600.248603.767203.03970HepG2CELF1
PSMD7ENSG00000103035.61991.590802302.31320-0.209202.746801.91570HepG2DDX19B
PSMD7ENSG00000103035.6976.798402173.93020-1.1542014.8531013.42630HepG2DDX21
PSMD7ENSG00000103035.62475.988303741.24180-0.595503.456402.36610HepG2DDX59
PSMD7ENSG00000103035.62050.368902381.66580-0.216102.439101.79660HepG2DKC1
PSMD7ENSG00000103035.61453.199501849.35290-0.347806.187305.26890HepG2DNAJC2
PSMD7ENSG00000103035.61915.304902637.93060-0.461804.215703.49190HepG2EIF2S1
PSMD7ENSG00000103035.62285.936402915.17000-0.350802.353201.76210HepG2EIF4A3
PSMD7ENSG00000103035.62492.937103587.29740-0.525105.412404.29500HepG2EIF4G2
PSMD7ENSG00000103035.63820.340304517.28310-0.241803.719403.03990HepG2ETF1
PSMD7ENSG00000103035.62317.224302896.80330-0.322102.447801.61220HepG2G3BP2
PSMD7ENSG00000103035.61043.976401677.88880-0.684608.179306.68100HepG2GEMIN5
PSMD7ENSG00000103035.61551.277901883.57950-0.280002.279001.68750HepG2HNRNPA1
PSMD7ENSG00000103035.62624.204703604.19820-0.4578010.098808.83710HepG2HNRNPF
PSMD7ENSG00000103035.63809.230703457.123300.139801.930501.35470HepG2HNRNPL
PSMD7ENSG00000103035.62661.730903563.93000-0.421104.120103.36810HepG2HNRNPLL
PSMD7ENSG00000103035.61602.531802081.31990-0.377106.204005.32680HepG2HNRNPU
PSMD7ENSG00000103035.62348.517703549.11290-0.5957010.914809.57140HepG2IGF2BP1
PSMD7ENSG00000103035.61806.122902125.99240-0.235203.662902.82930HepG2ILF2
PSMD7ENSG00000103035.64689.218302958.915900.664207.685806.67500HepG2MATR3
PSMD7ENSG00000103035.62167.990903635.03970-0.745606.600605.06500HepG2MTPAP
PSMD7ENSG00000103035.62597.930001674.783300.633303.786502.73380HepG2PABPC1
PSMD7ENSG00000103035.62412.200802060.099100.227502.699501.86070HepG2PARN
PSMD7ENSG00000103035.61474.262001914.70690-0.377102.734001.93020HepG2PRPF8
PSMD7ENSG00000103035.62372.723502996.84410-0.336905.083504.38890HepG2PTBP1
PSMD7ENSG00000103035.62089.808902535.60530-0.279004.447903.70210HepG2PUS1
PSMD7ENSG00000103035.62707.448603245.48200-0.261502.856002.22340HepG2QKI
PSMD7ENSG00000103035.63922.412902195.286300.837206.377205.33170HepG2RAVER1
PSMD7ENSG00000103035.62614.625503335.13190-0.351106.052405.30390HepG2NELFE
PSMD7ENSG00000103035.62511.090203106.34520-0.306904.871804.08390HepG2RECQL
PSMD7ENSG00000103035.62872.576403882.50610-0.434605.150404.25690HepG2RPLP0
PSMD7ENSG00000103035.62928.636203527.50890-0.268402.220801.58470HepG2SF3B1
PSMD7ENSG00000103035.62449.299803119.95500-0.349206.098505.27840HepG2SF3B4
PSMD7ENSG00000103035.62866.168203445.34250-0.265502.704502.00930HepG2SLBP
PSMD7ENSG00000103035.62667.538802161.434000.303406.096005.19970HepG2SMN1
PSMD7ENSG00000103035.65082.629604264.289100.253203.880703.31750HepG2SRFBP1
PSMD7ENSG00000103035.62873.396203547.60240-0.304103.691202.98760HepG2SRSF5
PSMD7ENSG00000103035.62659.176003540.98290-0.413208.602607.49220HepG2SRSF7
PSMD7ENSG00000103035.62654.252603702.27770-0.4801012.8119011.86780HepG2SSB
PSMD7ENSG00000103035.62141.583101600.215200.420302.688901.60570HepG2STIP1
PSMD7ENSG00000103035.61705.433002470.74490-0.534804.747903.89840HepG2SUPV3L1
PSMD7ENSG00000103035.62485.638602927.34060-0.236002.522201.98410HepG2TAF15
PSMD7ENSG00000103035.61887.089503474.08530-0.8805016.8862015.35470HepG2TARDBP
PSMD7ENSG00000103035.61552.685402022.23740-0.381204.627004.01530HepG2TIAL1
PSMD7ENSG00000103035.62647.169203052.31670-0.205502.774102.07300HepG2UPF1
PSMD7ENSG00000103035.63408.401302946.896500.209802.776802.17920HepG2UTP3
PSMD7ENSG00000103035.61806.515802123.22720-0.233003.169402.45930HepG2ZC3H8
PSMD7ENSG00000103035.64624.264803356.968400.4620016.3936015.34050HepG2ZNF622
PSMD7ENSG00000103035.64406.385703747.562900.233503.729203.08850K562AGGF1
PSMD7ENSG00000103035.62473.721503485.68640-0.494804.832503.66760K562BOP1
PSMD7ENSG00000103035.63623.118206799.57280-0.908207.086605.33250K562CNOT7
PSMD7ENSG00000103035.62361.350303706.40950-0.650406.788905.55230K562CPSF6
PSMD7ENSG00000103035.61722.319702147.69010-0.318403.610402.37910K562CSTF2
PSMD7ENSG00000103035.64923.166104195.976700.230503.075202.14460K562DKC1
PSMD7ENSG00000103035.63525.040304250.71940-0.270103.758802.94300K562EIF2S2
PSMD7ENSG00000103035.61932.712602556.79130-0.403702.784101.74460K562EIF3D
PSMD7ENSG00000103035.62758.261002305.921600.258302.061601.34960K562EIF4A3
PSMD7ENSG00000103035.65898.959606946.28310-0.235803.276202.25650K562EIF4G2
PSMD7ENSG00000103035.62210.320002852.09500-0.367804.111602.53310K562EXOSC5
PSMD7ENSG00000103035.62155.026402766.92860-0.360602.783601.65530K562FKBP4
PSMD7ENSG00000103035.62725.830703770.94220-0.468205.179904.00450K562FMR1
PSMD7ENSG00000103035.62485.188103196.10880-0.363002.850301.92270K562FTO
PSMD7ENSG00000103035.63054.430302398.063200.348905.509104.69580K562FXR1
PSMD7ENSG00000103035.61857.955102394.03080-0.365702.813601.37820K562GEMIN5
PSMD7ENSG00000103035.62681.847903538.80880-0.400003.950203.00630K562GPKOW
PSMD7ENSG00000103035.64742.555605664.45110-0.256302.457501.74330K562GRSF1
PSMD7ENSG00000103035.61725.882303188.30650-0.8855018.5185017.05350K562HNRNPC
PSMD7ENSG00000103035.61917.490302846.84830-0.570108.369206.29840K562HNRNPF
PSMD7ENSG00000103035.63186.520404084.52160-0.358205.486704.21610K562HNRNPU
PSMD7ENSG00000103035.64944.132404138.271700.256602.744901.92230K562KIF1C
PSMD7ENSG00000103035.62243.289103021.43970-0.429602.757001.82640K562KRR1
PSMD7ENSG00000103035.62505.797103454.23010-0.463104.352503.23660K562METAP2
PSMD7ENSG00000103035.63243.618004324.18560-0.4148010.185308.73550K562MTPAP
PSMD7ENSG00000103035.64264.843003249.458800.392202.285201.50200K562NAA15
PSMD7ENSG00000103035.63576.020504804.57040-0.4261016.5990014.97990K562NSUN2
PSMD7ENSG00000103035.62852.695703627.85880-0.346802.728501.90220K562PCBP3
PSMD7ENSG00000103035.62358.898202782.74640-0.238402.077301.38320K562POLR2G
PSMD7ENSG00000103035.62305.328402858.56360-0.310302.324201.50140K562PSIP1
PSMD7ENSG00000103035.63537.294502895.453000.288802.981502.29440K562PTBP1
PSMD7ENSG00000103035.66729.915207898.55960-0.231003.084002.07340K562PUM2
PSMD7ENSG00000103035.64520.931403768.043300.262703.458802.80800K562RBM15
PSMD7ENSG00000103035.61811.533102607.64870-0.525507.953706.27780K562RCC2
PSMD7ENSG00000103035.63356.363204740.86720-0.4983011.379009.81530K562SF3A3
PSMD7ENSG00000103035.61775.620902472.02480-0.477405.444903.86190K562SRFBP1
PSMD7ENSG00000103035.64094.715404857.11920-0.246304.880103.68100K562SRPK2
PSMD7ENSG00000103035.61542.269402249.93580-0.544805.132803.71030K562SUPV3L1
PSMD7ENSG00000103035.61506.007702749.51100-0.868408.706606.97380K562TIAL1
PSMD7ENSG00000103035.62077.352702920.53100-0.491506.094504.56760K562TRIM56
PSMD7ENSG00000103035.62672.117902281.687400.227801.996201.31440K562U2AF2
PSMD7ENSG00000103035.63745.682505094.38690-0.4437011.7590010.40590K562UPF1
PSMD7ENSG00000103035.62906.091704359.10750-0.5850010.347208.61590K562WDR3
PSMD7ENSG00000103035.65261.148706348.87460-0.271102.485801.67550K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PSMD7 is not available on ENCORE database.





2 RBPs can affect the splicing of PSMD7 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPSMD7ENSG00000103035.6chr16+743382007433829274336109743361907433918674340186-0.062000.000000.00000excludedK562SF3B4
SEPSMD7ENSG00000103035.6chr16+743382007433829274336018743361907433918674339786-0.080000.000000.00000excludedK562AQR
A3SSPSMD7ENSG00000103035.6chr16+7433818274338292743382007433829274336024743361900.056000.000000.00000longerK562AQR
MXEPSMD7ENSG00000103035.6chr16+7433401274334104743354527433555074330726743308867433610974336190-0.070000.007150.048282includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PSMD7 is not avaliable on ENCORE database.