PPP1R9A

General Information

Gene Name       : PPP1R9A
Gene ID             : ENSG00000158528.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PPP1R9A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PPP1R9AENSG00000158528.110.000.000.00ENCSR000AEF
HepG2PPP1R9AENSG00000158528.115.387.546.46ENCSR985KAT
K562PPP1R9AENSG00000158528.110.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PPP1R9A is not avaliable on ENCORE database.



Proteins bound to RNA
  • PPP1R9A RNA is bound by 26 proteins.  







eCLIP assay for PPP1R9A is not avaliable on ENCORE database.





26 proteins are bound to PPP1R9A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79491964594919673+3'-UTR3.406383.68471HepG2BCLAF1
chr79453938894539459+3'-UTR,5'-UTR,CDS3.106606.40150HepG2HLTF
chr79453941194539489+3'-UTR,5'-UTR,CDS3.450968.96027HepG2EIF3H
chr79453939094539489+3'-UTR,5'-UTR,CDS5.3477024.15996HepG2BCLAF1
chr79453925794539300+3'-UTR,5'-UTR3.306573.34034HepG2HLTF
chr79453965794539703+CDS5.056006.72583HepG2EIF3H
chr79487681094876835+CDS3.422593.27569HepG2BCLAF1
chr79487942194879481+CDS4.6695810.19430HepG2BCLAF1
chr79490339894903410+CDS,intron-Distal4.291073.89826HepG2BCLAF1
chr79474057094740603+CDS,intron-Proximal4.8187811.54096HepG2BCLAF1
chr79489799694898058+CDS,intron-Proximal3.367436.47196HepG2BCLAF1
chr79489873294898799+CDS,intron-Distal3.139043.41665HepG2GRWD1
chr79489855494898605+CDS,intron-Distal,intron-Proximal3.701344.50744HepG2U2AF2
chr79488112394881174+CDS,intron-Proximal4.309516.41037HepG2BUD13
chr79475003394750089+CDS4.9663211.99174HepG2BCLAF1
chr79454037494540439+CDS4.8499212.44336HepG2BCLAF1
chr79453996094540022+CDS4.2819311.55759HepG2BCLAF1
chr79454064994540691+CDS5.549089.32793HepG2BCLAF1
chr79489874694898796+CDS,intron-Distal3.367074.74886HepG2BCLAF1
chr79453962294539711+CDS3.5740012.84442HepG2BCLAF1
chr79482774894827800+CDS,intron-Proximal3.021913.91443HepG2PPIG
chr79454052994540595+CDS4.320493.56019HepG2GRWD1
chr79454050394540567+CDS4.5563314.18756HepG2BCLAF1
chr79453968094539724+CDS4.350304.42137HepG2HLTF
chr79479123594791284+CDS,intron-Proximal3.934517.83567HepG2BCLAF1
chr79483292894833020+CDS,intron-Distal,intron-Proximal3.777343.95921HepG2U2AF2
chr79491552394915617+CDS4.748336.33775HepG2GRWD1
chr79488134494881369+CDS4.083554.46864HepG2BCLAF1
chr79485527194855412+CDS,intron-Proximal3.594213.05347HepG2UCHL5
chr79488108794881116+CDS3.422593.57857HepG2BCLAF1
chr79487939294879493+CDS3.563633.88337HepG2FXR2
chr79485527594855356+CDS3.8274511.53232HepG2BCLAF1
chr79475008994750148+CDS,intron-Proximal4.0207910.35753HepG2BCLAF1
chr79489785994897913+CDS,intron-Proximal4.057414.23295HepG2GRWD1
chr79475005794750146+CDS,intron-Proximal3.631104.49016HepG2FXR2
chr79454056794540649+CDS6.3829519.14857HepG2BCLAF1
chr79479119994791284+CDS,intron-Proximal3.941847.27605HepG2GRWD1
chr79453996794539995+CDS4.136053.85494HepG2HLTF
chr79485527094855356+CDS,intron-Proximal3.343747.61685HepG2PPIG
chr79454079494540821+CDS,intron-Proximal5.9967813.58086HepG2BCLAF1
chr79488127494881304+CDS3.169114.26492HepG2BCLAF1
chr79479118794791235+CDS3.931559.08790HepG2BCLAF1
chr79454073894540794+CDS4.4803310.57092HepG2BCLAF1
chr79458258694582655+intron-Distal4.274893.60235HepG2HNRNPM
chr79459644894596489+intron-Distal4.058033.86809HepG2SUGP2
chr79465439394654441+intron-Distal3.471206.50485HepG2SUGP2
chr79468527394685348+intron-Distal6.1722515.06634HepG2QKI
chr79483433494834395+intron-Distal6.6822125.73456HepG2AGGF1
chr79467298794673089+intron-Distal3.399433.30286HepG2PTBP1
chr79491430594914348+intron-Distal3.685133.55754HepG2U2AF2
chr79468344094683504+intron-Distal3.323694.23034HepG2HNRNPC
chr79458344894583530+intron-Distal4.088734.28663HepG2SUGP2
chr79459695794597036+intron-Distal4.5010815.79681HepG2SUGP2
chr79485511394855164+intron-Distal5.174026.58335HepG2QKI
chr79487210894872173+intron-Distal3.172843.12625HepG2QKI
chr79483428294834334+intron-Distal6.3664614.42814HepG2AGGF1
chr79458503494585090+intron-Distal3.336616.05394HepG2SUGP2
chr79483392794834053+intron-Distal5.7685518.04280HepG2AGGF1
chr79454617294546193+intron-Distal3.225385.59193HepG2HNRNPC
chr79459615194596197+intron-Distal4.093613.62366HepG2HNRNPM
chr79483388494833927+intron-Distal5.6660014.16378HepG2AGGF1
chr79461426694614329+intron-Distal4.208003.27829HepG2MATR3
chr79464457494644612+intron-Distal3.741735.58879HepG2HNRNPL
chr79483500694835117+intron-Distal3.430443.19079HepG2HNRNPL
chr79465542194655514+intron-Distal4.108485.95943HepG2HNRNPM
chr79487211394872228+intron-Distal3.305633.80334HepG2U2AF2
chr79459872194598787+intron-Distal3.408633.11000HepG2HNRNPM
chr79459694994597048+intron-Distal5.276155.43487HepG2EXOSC5
chr79488055394880653+intron-Distal4.566614.12401HepG2U2AF2
chr79455008694550237+intron-Distal3.134414.83226HepG2HNRNPM
chr79458515694585207+intron-Distal4.100808.05781HepG2SUGP2
chr79468520294685273+intron-Distal4.6163713.30452HepG2QKI
chr79483444994834488+intron-Distal6.2128511.30066HepG2AGGF1
chr79483388994833956+intron-Distal3.712649.23913HepG2HNRNPL
chr79454303394543074+intron-Distal3.154353.46325HepG2SUGP2
chr79459644894596493+intron-Distal5.8279910.47230HepG2HNRNPM
chr79475204094752101+intron-Distal4.663295.05488HepG2QKI
chr79483431994834416+intron-Distal4.9466014.36640HepG2XPO5
chr79465507294655169+intron-Distal3.747354.78196HepG2PTBP1
chr79483422094834339+intron-Distal5.3596728.88275HepG2HNRNPL
chr79483433994834387+intron-Distal6.4545325.11389HepG2HNRNPL
chr79461500694615073+intron-Distal3.936306.25619HepG2SUGP2
chr79458539994585443+intron-Distal3.392574.08528HepG2SUGP2
chr79483512694835192+intron-Distal4.572794.22343HepG2XPO5
chr79460091294600971+intron-Distal4.408634.66899HepG2HNRNPM
chr79455269794552755+intron-Distal3.041263.04623HepG2KHSRP
chr79483395694833997+intron-Distal4.138307.69735HepG2HNRNPL
chr79458576494585864+intron-Distal3.155724.03654HepG2SFPQ
chr79459696994597046+intron-Distal5.2305614.44091HepG2HNRNPM
chr79465330194653374+intron-Distal4.079153.86368HepG2HNRNPM
chr79454218094542240+intron-Distal3.432157.30092HepG2PCBP2
chr79489829394898360+intron-Distal4.320973.73609HepG2KHSRP
chr79464452794644574+intron-Distal4.2374512.57892HepG2HNRNPL
chr79454085494540951+intron-Distal,intron-Proximal4.251307.76172HepG2TIAL1
chr79454885794548967+intron-Distal4.396104.74221HepG2PTBP1
chr79459552494595558+intron-Distal3.334683.90822HepG2HNRNPM
chr79454517194545244+intron-Distal4.732315.83842HepG2SUGP2
chr79459694494597009+intron-Distal3.7578510.81321HepG2MATR3
chr79459869194598788+intron-Distal3.806385.30446HepG2SUGP2
chr79485586394855947+intron-Distal5.1511612.44638HepG2QKI
chr79483429194834394+intron-Distal5.7184113.08439HepG2GTF2F1
chr79459549494595571+intron-Distal4.809547.34531HepG2SUGP2
chr79458488594584932+intron-Distal3.073304.24063HepG2SUGP2
chr79456751894567589+intron-Distal3.507903.73413HepG2RBFOX2
chr79455247894552548+intron-Distal3.595034.82741HepG2KHSRP
chr79463143194631505+intron-Distal3.970054.52298HepG2QKI
chr79487220194872267+intron-Distal3.677574.52298HepG2QKI
chr79460097194601028+intron-Distal3.788135.63625HepG2HNRNPM
chr79458514194585245+intron-Distal3.708607.91367HepG2MATR3
chr79460036494600402+intron-Distal3.058033.00129HepG2SUGP2
chr79458520794585347+intron-Distal3.8150814.18371HepG2SUGP2
chr79483377894833826+intron-Distal4.941274.75034HepG2XPO5
chr79459644594596482+intron-Distal3.507733.84798HepG2MATR3
chr79454916294549214+intron-Distal4.6961110.81442HepG2LIN28B
chr79456129694561366+intron-Distal4.577693.34098HepG2HNRNPM
chr79459437594594426+intron-Distal3.958653.27946HepG2HNRNPM
chr79464450694644527+intron-Distal3.311615.01860HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PPP1R9A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PPP1R9A is not available on ENCORE database.

  • 75 RBPs can affect the levels of PPP1R9A.  








The Knockdown/knockout RNA-Seq assay for PPP1R9A is not available on ENCORE database.





75 RBPs can affect the gene expression of PPP1R9A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PPP1R9AENSG00000158528.71420.092801027.972000.466104.600603.24920HepG2AATF
PPP1R9AENSG00000158528.72060.849401352.015200.6080015.7943014.59490HepG2ACO1
PPP1R9AENSG00000158528.71878.399901325.366400.503003.927803.31090HepG2AKAP1
PPP1R9AENSG00000158528.71587.634301358.528500.224702.042101.36960HepG2AKAP8L
PPP1R9AENSG00000158528.7779.982101096.65520-0.491603.811202.89350HepG2ASCC1
PPP1R9AENSG00000158528.7790.953801094.47420-0.468602.204001.37080HepG2BCCIP
PPP1R9AENSG00000158528.7639.186101041.88960-0.704907.126705.92720HepG2CIRBP
PPP1R9AENSG00000158528.71493.454001052.623000.504603.356401.80880HepG2CSTF2T
PPP1R9AENSG00000158528.71787.133201393.081000.359304.782703.98010HepG2CELF1
PPP1R9AENSG00000158528.71270.023901497.95050-0.238102.881802.12650HepG2DAZAP1
PPP1R9AENSG00000158528.7843.117601251.65700-0.570005.805304.39720HepG2DDX5
PPP1R9AENSG00000158528.7749.051901096.09470-0.549207.682806.55730HepG2DNAJC21
PPP1R9AENSG00000158528.72251.622701128.095400.9970011.165209.82700HepG2EIF4B
PPP1R9AENSG00000158528.71112.802501415.62600-0.347202.634501.83840HepG2EIF4G2
PPP1R9AENSG00000158528.72161.355001422.401100.603504.930803.92950HepG2FIP1L1
PPP1R9AENSG00000158528.7844.05530582.895100.534004.823903.80120HepG2FUBP3
PPP1R9AENSG00000158528.71554.962601084.472300.519804.435203.60160HepG2G3BP1
PPP1R9AENSG00000158528.7635.43410801.81820-0.335502.123601.34360HepG2GEMIN5
PPP1R9AENSG00000158528.71040.531701306.10870-0.328001.933901.39250HepG2GPKOW
PPP1R9AENSG00000158528.71181.857601432.91430-0.277903.046502.29600HepG2HNRNPF
PPP1R9AENSG00000158528.71052.143801364.53230-0.375105.936404.98090HepG2HNRNPL
PPP1R9AENSG00000158528.71001.642201246.44390-0.315502.001501.45760HepG2HNRNPLL
PPP1R9AENSG00000158528.71020.341201222.74850-0.261102.686402.08890HepG2HNRNPU
PPP1R9AENSG00000158528.7971.165201411.01170-0.538907.115806.00320HepG2IGF2BP1
PPP1R9AENSG00000158528.7790.036301102.37790-0.480603.707802.93590HepG2IGF2BP2
PPP1R9AENSG00000158528.72066.798201034.391400.998503.931802.75910HepG2IGF2BP3
PPP1R9AENSG00000158528.7992.064201248.99650-0.332304.711103.77590HepG2ILF2
PPP1R9AENSG00000158528.7816.335601361.05690-0.737505.716203.76120HepG2ILF3
PPP1R9AENSG00000158528.7932.253501329.81890-0.512403.632302.23430HepG2KHDRBS1
PPP1R9AENSG00000158528.71792.099401485.362100.270702.544901.81420HepG2NOL12
PPP1R9AENSG00000158528.7713.292501105.21340-0.631806.345705.24000HepG2NSUN2
PPP1R9AENSG00000158528.7442.83340673.24790-0.604403.068701.38840HepG2PA2G4
PPP1R9AENSG00000158528.7592.696201275.96330-1.106209.235207.56720HepG2PABPC1
PPP1R9AENSG00000158528.71518.062501210.307200.326804.055603.05320HepG2PARN
PPP1R9AENSG00000158528.71658.761401015.489500.7078016.6603015.37600HepG2PCBP1
PPP1R9AENSG00000158528.7573.20420744.71740-0.377602.951001.67770HepG2PKM
PPP1R9AENSG00000158528.7774.674801090.59330-0.493506.335105.25140HepG2PPIL4
PPP1R9AENSG00000158528.71150.54730830.284500.470503.934402.99160HepG2PRPF8
PPP1R9AENSG00000158528.72386.271801033.296101.2074049.6317047.93500HepG2PTBP1
PPP1R9AENSG00000158528.71051.962401417.89530-0.430703.895303.20150HepG2PUF60
PPP1R9AENSG00000158528.72426.811901505.143300.6891024.6926023.28520HepG2PUM1
PPP1R9AENSG00000158528.71581.352301377.143600.199402.035301.48820HepG2PUS1
PPP1R9AENSG00000158528.71896.976401119.090300.7613015.5785014.27080HepG2QKI
PPP1R9AENSG00000158528.71751.031401274.391000.458302.120801.49750HepG2RAVER1
PPP1R9AENSG00000158528.72514.898802083.015900.271702.899202.37210HepG2RBM22
PPP1R9AENSG00000158528.71598.310801015.644500.654109.541608.34630HepG2RBM25
PPP1R9AENSG00000158528.71720.665601149.961400.5813011.0789010.13230HepG2NELFE
PPP1R9AENSG00000158528.71614.191501071.029200.591705.646904.80540HepG2RECQL
PPP1R9AENSG00000158528.71027.433701543.59670-0.587307.142606.12120HepG2RPLP0
PPP1R9AENSG00000158528.71345.53660821.341900.712007.318606.11200HepG2RRP9
PPP1R9AENSG00000158528.7808.472401088.90950-0.429606.008605.11490HepG2SAFB2
PPP1R9AENSG00000158528.7944.894201319.73220-0.482003.231201.82280HepG2SART3
PPP1R9AENSG00000158528.71752.341701075.798900.7038016.2579015.00510HepG2SF3B4
PPP1R9AENSG00000158528.71101.003201359.50940-0.304303.971503.15400HepG2SLBP
PPP1R9AENSG00000158528.73556.925302352.663700.5962018.9955017.99090HepG2SRFBP1
PPP1R9AENSG00000158528.71885.624401122.899400.7477019.6346018.61740HepG2SRSF1
PPP1R9AENSG00000158528.71159.716801407.79020-0.279703.035602.31190HepG2SRSF7
PPP1R9AENSG00000158528.71246.64930913.537000.448406.812606.01500HepG2SRSF9
PPP1R9AENSG00000158528.71746.998302042.62350-0.225502.679902.17240HepG2SSB
PPP1R9AENSG00000158528.7662.57930950.09160-0.520003.622802.22180HepG2STAU1
PPP1R9AENSG00000158528.7911.006001218.92290-0.420102.489501.45420HepG2STIP1
PPP1R9AENSG00000158528.72138.335601592.140800.425408.554207.56180HepG2SUCLG1
PPP1R9AENSG00000158528.71374.430801071.256900.359402.412301.77550HepG2SUPV3L1
PPP1R9AENSG00000158528.71421.652801009.301000.494106.854206.04040HepG2TAF15
PPP1R9AENSG00000158528.71230.76450927.415200.408204.165403.14810HepG2TIA1
PPP1R9AENSG00000158528.7845.272901188.11540-0.491205.891605.21340HepG2TIAL1
PPP1R9AENSG00000158528.7976.046201198.75050-0.296503.202002.60510HepG2TRIM56
PPP1R9AENSG00000158528.71792.051601216.785500.558406.016205.10610HepG2U2AF1
PPP1R9AENSG00000158528.71986.250601466.195000.437903.163802.26890HepG2UBE2L3
PPP1R9AENSG00000158528.71060.806601262.26080-0.250802.582901.90460HepG2UPF1
PPP1R9AENSG00000158528.7587.09670981.08910-0.740804.785603.45000HepG2UPF2
PPP1R9AENSG00000158528.7787.636401218.65730-0.6297011.2534010.17710HepG2UTP3
PPP1R9AENSG00000158528.72009.085801252.663000.681405.270203.51390HepG2XRCC5
PPP1R9AENSG00000158528.7605.031401054.53330-0.801508.033706.80970HepG2XRN2
PPP1R9AENSG00000158528.71107.912901388.23980-0.325402.674402.13510HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PPP1R9A is not available on ENCORE database.





3 RBPs can affect the splicing of PPP1R9A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPPP1R9AENSG00000158528.7chr7+9487631194876399948552729485542894876784948768380.234000.000640.01843includedHepG2HNRNPK
SEPPP1R9AENSG00000158528.7chr7+9487631194876399948552729485542894876784948768380.327000.000320.01790includedHepG2HNRNPU
A5SSPPP1R9AENSG00000158528.7chr7+9491332994913642949133299491352894915517949156370.388000.000680.09881longerHepG2PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PPP1R9A is not avaliable on ENCORE database.