PHF5A

General Information

Gene Name       : PHF5A
Gene ID             : ENSG00000100410.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PHF5A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHF5AENSG00000100410.763.4762.4162.94ENCSR000AEF
HepG2PHF5AENSG00000100410.765.9975.8070.89ENCSR985KAT
K562PHF5AENSG00000100410.772.9772.9972.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHF5A is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHF5A RNA is bound by 17 proteins.  







eCLIP assay for PHF5A is not avaliable on ENCORE database.





17 proteins are bound to PHF5A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr224185585241855909-3'-UTR,intron-Distal3.097305.94154K562DDX6
chr224185582441855884-3'-UTR,intron-Distal3.525107.19520HepG2AKAP1
chr224185588441855914-3'-UTR,intron-Distal4.489554.13758HepG2AKAP1
chr224185582441855861-3'-UTR,intron-Distal3.9919112.78813K562UPF1
chr224185586841855911-3'-UTR,intron-Distal5.4173825.40505K562UPF1
chr224185586441855912-3'-UTR,intron-Distal4.813587.79026K562TIA1
chr224185629841856376-3'-UTR,intron-Distal,intron-Proximal3.926235.19325HepG2LARP4
chr224185584441855919-3'-UTR,intron-Distal4.204767.59881HepG2UPF1
chr224185585341855909-3'-UTR,intron-Distal4.429476.16495HepG2DDX55
chr224185588141855907-3'-UTR,intron-Distal4.615535.42839K562PABPC4
chr224185624241856369-3'-UTR,intron-Distal,intron-Proximal5.3876811.53931HepG2UPF1
chr224185580941855909-3'-UTR,intron-Distal4.1479313.85353K562FAM120A
chr224185622841856317-3'-UTR,intron-Distal,intron-Proximal4.3976412.07826K562UPF1
chr224185587041855909-3'-UTR,intron-Distal3.026033.70380HepG2LARP4
chr224186460441864663-5'-UTR,CDS,intron-Distal,intron-Proximal6.7236445.98970K562DDX3X
chr224186409541864179-CDS,intron-Distal,intron-Proximal5.618609.63974K562AQR
chr224186408441864161-CDS,intron-Distal,intron-Proximal4.5607610.85397HepG2BUD13
chr224186408541864166-CDS,intron-Distal,intron-Proximal4.291887.52362K562EFTUD2
chr224186347841863519-CDS,intron-Distal3.436296.18351K562YBX3
chr224186412141864191-CDS,intron-Distal,intron-Proximal4.930434.90235K562SF3B4
chr224186456241864628-CDS,intron-Distal,intron-Proximal4.4202611.26073HepG2PRPF8
chr224186458441864607-CDS,intron-Distal,intron-Proximal3.768386.42898K562AQR
chr224186409541864171-CDS,intron-Distal,intron-Proximal4.343467.26476HepG2AQR
chr224186453141864607-CDS,intron-Distal,intron-Proximal4.800005.32906HepG2AQR
chr224186410941864160-CDS,intron-Distal,intron-Proximal4.711886.01148HepG2EFTUD2
chr224186355241863606-CDS,intron-Distal3.381539.50106K562DDX3X
chr224186411341864170-CDS,intron-Distal,intron-Proximal3.439583.13705K562BUD13
chr224186412741864152-CDS,intron-Distal,intron-Proximal5.0113722.58730K562DDX3X
chr224186450941864576-intron-Distal,intron-Proximal4.4147811.97256HepG2BUD13
chr224186450841864584-intron-Distal,intron-Proximal3.493804.34492K562XRN2
chr224186450941864565-intron-Distal,intron-Proximal4.176586.95984K562EFTUD2
chr224186450441864584-intron-Distal,intron-Proximal3.552045.31870HepG2RBM22
chr224186449141864557-intron-Distal,intron-Proximal3.270357.45900HepG2PRPF8
chr224186451341864557-intron-Distal,intron-Proximal5.342337.28294K562AQR
chr224186450741864575-intron-Distal,intron-Proximal5.9825115.47477HepG2EFTUD2
chr224186449841864543-intron-Distal,intron-Proximal4.413883.12843K562PRPF8
chr224186455741864584-intron-Distal,intron-Proximal4.704127.53589K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHF5A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHF5A is not available on ENCORE database.

  • 88 RBPs can affect the levels of PHF5A.  








The Knockdown/knockout RNA-Seq assay for PHF5A is not available on ENCORE database.





88 RBPs can affect the gene expression of PHF5A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHF5AENSG00000100410.3408.36720505.77180-0.308602.110901.56560HepG2ACO1
PHF5AENSG00000100410.3603.73950853.59260-0.499605.905004.96450HepG2AUH
PHF5AENSG00000100410.3346.16030537.98460-0.636103.736502.70520HepG2BCLAF1
PHF5AENSG00000100410.3274.20690449.51860-0.713104.986204.08680HepG2CPSF6
PHF5AENSG00000100410.3334.30560569.57250-0.768704.381602.80890HepG2DDX27
PHF5AENSG00000100410.3566.25980803.70470-0.505203.483902.79160HepG2DDX3X
PHF5AENSG00000100410.3435.70660608.67130-0.482302.268101.56160HepG2DDX55
PHF5AENSG00000100410.3505.69090690.43550-0.449302.445801.86200HepG2DDX6
PHF5AENSG00000100410.3364.18080473.68280-0.379302.539401.86110HepG2DNAJC21
PHF5AENSG00000100410.3352.93860469.42260-0.411503.408702.69820HepG2DNAJC2
PHF5AENSG00000100410.3336.09480663.69610-0.9817010.051508.96190HepG2EIF2S1
PHF5AENSG00000100410.3342.37100733.44470-1.0991012.0026010.69660HepG2EIF4A3
PHF5AENSG00000100410.3360.83740714.14480-0.984907.919106.78480HepG2EIF4B
PHF5AENSG00000100410.3569.32240818.64560-0.524004.456103.43790HepG2EIF4G2
PHF5AENSG00000100410.3665.14120980.07890-0.559207.653506.73780HepG2ETF1
PHF5AENSG00000100410.3430.46900686.49370-0.673305.263404.35880HepG2G3BP1
PHF5AENSG00000100410.3520.03430728.83760-0.487003.314102.33240HepG2G3BP2
PHF5AENSG00000100410.3342.40320509.59060-0.573603.332802.63480HepG2GPKOW
PHF5AENSG00000100410.3613.74340796.11060-0.375303.682102.62860HepG2HNRNPA2B1
PHF5AENSG00000100410.3389.51450531.90550-0.449502.710002.02350HepG2HNRNPC
PHF5AENSG00000100410.3538.19130763.77120-0.505005.406704.44450HepG2HNRNPF
PHF5AENSG00000100410.3229.92620486.30930-1.0807010.059308.94460HepG2HNRNPLL
PHF5AENSG00000100410.3568.35810752.10150-0.404103.115602.35070HepG2IGF2BP1
PHF5AENSG00000100410.3521.96880697.79590-0.418802.418201.78200HepG2IGF2BP2
PHF5AENSG00000100410.3503.31550701.88200-0.479802.481501.54090HepG2KHSRP
PHF5AENSG00000100410.3322.35220495.91500-0.621502.862801.87630HepG2MTPAP
PHF5AENSG00000100410.3431.79760761.99080-0.819407.604406.58040HepG2NCBP2
PHF5AENSG00000100410.3705.78070859.01920-0.283502.230401.54520HepG2NOL12
PHF5AENSG00000100410.3297.12880431.18720-0.537203.028802.24630HepG2NSUN2
PHF5AENSG00000100410.3450.65280678.57020-0.590504.328603.43870HepG2PABPC4
PHF5AENSG00000100410.3359.34140471.28690-0.391302.593201.87810HepG2PPIL4
PHF5AENSG00000100410.3268.31040469.66470-0.807705.527504.42850HepG2PRPF8
PHF5AENSG00000100410.3467.34020691.77560-0.565806.110305.36010HepG2PTBP1
PHF5AENSG00000100410.3652.41970869.79940-0.414903.832403.04670HepG2PUM2
PHF5AENSG00000100410.3389.74110515.15120-0.402503.240802.58660HepG2PUS1
PHF5AENSG00000100410.3470.92170749.18490-0.669807.653206.69320HepG2QKI
PHF5AENSG00000100410.3731.87040517.730900.499302.114301.49170HepG2RAVER1
PHF5AENSG00000100410.3405.60740679.94300-0.745307.993906.89850HepG2RBM25
PHF5AENSG00000100410.3570.34900769.87010-0.432804.127303.48990HepG2NELFE
PHF5AENSG00000100410.3542.13900717.04710-0.403403.605202.91470HepG2RECQL
PHF5AENSG00000100410.3554.48640822.69640-0.569204.857503.98580HepG2RPLP0
PHF5AENSG00000100410.3247.74140343.91960-0.473202.535901.94520HepG2RPS19
PHF5AENSG00000100410.3363.94700534.87040-0.555502.979002.15070HepG2RPS3A
PHF5AENSG00000100410.3327.59780464.60780-0.504102.318301.59190HepG2RRP9
PHF5AENSG00000100410.3362.00240470.57050-0.378402.773502.12840HepG2SAFB2
PHF5AENSG00000100410.3810.41800518.037400.645504.670303.78030HepG2SF3A3
PHF5AENSG00000100410.3289.69750481.36520-0.732605.673604.69270HepG2SF3B1
PHF5AENSG00000100410.3590.90230720.20650-0.285502.087201.56240HepG2SF3B4
PHF5AENSG00000100410.3628.63660786.17010-0.322603.040402.30930HepG2SLBP
PHF5AENSG00000100410.3343.78080504.37040-0.553002.948001.31450HepG2SND1
PHF5AENSG00000100410.3324.82190535.59780-0.721503.837002.91060HepG2SNRNP70
PHF5AENSG00000100410.3516.43440750.36330-0.539006.351605.36760HepG2SRSF7
PHF5AENSG00000100410.3468.42630611.59480-0.384803.285202.69450HepG2SRSF9
PHF5AENSG00000100410.3659.70850803.25970-0.284002.464701.97480HepG2SSB
PHF5AENSG00000100410.3433.74440605.95890-0.482402.250201.63170HepG2SUPV3L1
PHF5AENSG00000100410.3288.38610473.93150-0.716705.334104.37390HepG2TARDBP
PHF5AENSG00000100410.3445.69550620.87350-0.478203.832302.85560HepG2TIA1
PHF5AENSG00000100410.3325.78690513.52680-0.656506.017505.33330HepG2TIAL1
PHF5AENSG00000100410.3190.69770518.01390-1.4417020.4375019.08410HepG2TRIM56
PHF5AENSG00000100410.3629.97280801.03610-0.346602.558101.72040HepG2TUFM
PHF5AENSG00000100410.3585.37640847.85020-0.534403.421302.48980HepG2UBE2L3
PHF5AENSG00000100410.3364.52480459.42060-0.333802.225001.58780HepG2UPF1
PHF5AENSG00000100410.3685.27470443.551600.627507.674806.75840HepG2UTP3
PHF5AENSG00000100410.3268.20660430.49040-0.682606.795405.81860HepG2ZC3H8
PHF5AENSG00000100410.3350.92860517.44790-0.560203.050801.68380HepG2ZRANB2
PHF5AENSG00000100410.3629.24680850.39510-0.434504.703203.43400K562BCLAF1
PHF5AENSG00000100410.3255.52500385.85630-0.594603.746102.48160K562CCAR1
PHF5AENSG00000100410.3422.37500632.25950-0.582002.563201.80740K562CPSF6
PHF5AENSG00000100410.3484.69810645.15120-0.412603.191502.04640K562CSTF2
PHF5AENSG00000100410.3538.72070745.76380-0.469204.990503.20300K562DDX27
PHF5AENSG00000100410.3921.26530731.897900.331902.761601.88900K562DKC1
PHF5AENSG00000100410.3803.680201152.54170-0.520107.139606.06340K562EIF2S2
PHF5AENSG00000100410.3583.14820834.99740-0.517903.015401.31930K562ESF1
PHF5AENSG00000100410.3470.96830650.45840-0.465803.686002.19800K562EXOSC5
PHF5AENSG00000100410.3365.36120560.16010-0.616503.951102.57540K562FKBP4
PHF5AENSG00000100410.3334.83310545.14380-0.703203.491602.45600K562FTO
PHF5AENSG00000100410.3975.93250517.086400.9163017.1627015.76980K562FXR1
PHF5AENSG00000100410.3553.91370728.25290-0.394803.377202.11560K562GLRX3
PHF5AENSG00000100410.3337.13740645.76380-0.937707.312406.38640K562HNRNPC
PHF5AENSG00000100410.31409.58350645.927501.1257016.8572014.12980K562HNRNPM
PHF5AENSG00000100410.31421.519301064.709300.416903.485802.59490K562HSPD1
PHF5AENSG00000100410.3329.27310515.37610-0.646302.561101.66650K562KRR1
PHF5AENSG00000100410.3932.13120746.321800.320602.389701.60610K562MAGOH
PHF5AENSG00000100410.31129.632301475.22580-0.385102.882301.72490K562MSI2
PHF5AENSG00000100410.3603.37030850.71530-0.495606.877805.77450K562NSUN2
PHF5AENSG00000100410.3575.06630827.38260-0.524803.871702.88790K562PCBP3
PHF5AENSG00000100410.31268.14710891.480600.508304.766303.64430K562PPIG
PHF5AENSG00000100410.3946.18750725.095600.383903.333602.61230K562PTBP1
PHF5AENSG00000100410.31305.348701573.75300-0.269802.421901.52180K562PUM2
PHF5AENSG00000100410.3802.86470657.172600.288801.956101.44250K562RBM15
PHF5AENSG00000100410.3363.46560573.99180-0.659203.256602.19920K562SF3B1
PHF5AENSG00000100410.3747.69550581.568900.362402.894702.01840K562SF3B4
PHF5AENSG00000100410.3487.32200677.73280-0.475803.098701.36260K562SRP68
PHF5AENSG00000100410.3909.49980710.831400.355502.707702.00750K562SRSF1
PHF5AENSG00000100410.3396.31550657.49000-0.730304.460903.14510K562SUPV3L1
PHF5AENSG00000100410.3847.45250636.543100.412803.692102.74420K562SYNCRIP
PHF5AENSG00000100410.3543.95830693.95620-0.351302.411001.65280K562TIA1
PHF5AENSG00000100410.3402.22660556.88190-0.469402.674801.75630K562TIAL1
PHF5AENSG00000100410.3355.91710591.41040-0.732604.396903.14290K562TRIM56
PHF5AENSG00000100410.3379.56670695.76790-0.874305.076603.65300K562UCHL5
PHF5AENSG00000100410.3701.00610902.03190-0.363803.911603.06940K562UPF1
PHF5AENSG00000100410.3525.28860771.83940-0.555205.411604.16670K562WDR3
PHF5AENSG00000100410.3985.725801451.58370-0.558403.243402.30020K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHF5A is not available on ENCORE database.





3 RBPs can affect the splicing of PHF5A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPHF5AENSG00000100410.3chr22-418640234186415141863451418636184186460541864629-0.058000.000070.00233excludedK562SF3B4
SEPHF5AENSG00000100410.3chr22-418641274186415141863451418636184186460541864729-0.057000.000000.00003excludedK562U2AF2
MXEPHF5AENSG00000100410.3chr22-4186345141863618418641274186415141855720418564914186460541864729-0.212000.000010.009622includedK562BUD13

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHF5A is not avaliable on ENCORE database.